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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0446300 |
| Transcript ID | LotjaGi4g1v0446300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT5G25810.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY; TrEMBL-Plants: tr|V7CTS7|V7CTS7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0446300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81901491..81902909) extracted from Lotus japonicus Gifu genome v1.2.
CAACTCACTTACAATAATAAGCCCCACTTCTTCTCTTTTAAATCTTTGGTCCTTCACTCCCTCCCCCCTCTAACTCTATA ACCCCCAACCCCTCCCTTCTCCAAACTTCAATGCTCCAAACTTTTAACATCCTTCATCACTTGACTCTCTCACACACTTC ACTTCTCATTCTCATTCTGCTCCAAGTACATACTCCTTTTAGAACAACACCATAGAGTATTACTACAAAGTGGAAAACTA ACCAGTGTTGTCGAGTCTTAGCTTCTGAGTAAACGTGTCTTGATTTCTGTGCAAAACAGTGAAATCAAACCCTCAGTTTT AAGAGAAAACAGTGGAGGAGTATAGTTAGAAACTGAGTGAAGCCAATGGGTGAACAACCCAGCTCAGAAACAGAGAAAAT CACTGACATTCCTAAACGTTCATTATCGGAGCCCCGGTCACCCGACCCGAATGAGAAAAGAACCAAGCGGCCCAGAGAAA GCAACGGGAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCATGGGGCAAATGGGTATCCGAAATCCGCGAACCCCGC AAGAAGAACCGGGTCTGGCTCGGCACATTCGCCACCGCGGAGATGGCGGCGCGTGCTCACGACGTCGCTGCTCTCGCCAT CAAAGGAAGCTCCGCCATACTCAACTTCCCTGACCTCGCAGGTTCATTGCCCCGACCCGAGTCCAAATCGCCCAGAGATG TCCAGGCCGCAGCAGCCAAAGCAGCTTCCATGGCGGTTTCCGATTCCAAAACGGCGTCGCATTGCTCTTATTCATCGTCG TCGTCGGAGGAGCTGGGTGAAATAGTGGAGCTGCCGAGGCTGGGAACGAGTTTTGAAATACCCGACCCGGGAAGCGAGTT GGTGTTTTCCGACCCGGTTGATGGGTGGCCTTATTCACACACTTGGTATCATGAGGGGCAGGGCATTTATGATGATAGGG ACTGTGGAGGGTATTATATTGGGGATCAGATTTCAATGCAGGACTCTGAAAGTTTGATTCTTTGTGGCTTTGAGGCTTCA TTGTGGCAGTGGCAACATTAATGTCACCCATTGCTGTGTGCTTTCTTTTTCTTTTCTTCTATGAAACCTTCTTTTGTCCT TTTCTAAGTTATAGCCCTTTTGCATTTTTTTCACTTGAAGGGCTAAAACTAAATTGTACTTGTTGCTAGTAGTGAGTGTT TATCACTTTTAGCTTGTTTGGATTACATTTTGATGAGAAGCTATTCATTGAAAGTTCTTTCTATCATGTTTGATTTCATG GTAAAATAGTCACTTTTGGTTATAAGCTAGTACAAGTTTTAAGAATACCAATATGGAGCATGTTTGGAAAGCATAATCAA TTCGATATTCGATCTTTGAATCAATTATACTTATTAGGTGAAATGATGTTTGATTGTAC
CDS sequence (LotjaGi4g1v0446300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAACAACCCAGCTCAGAAACAGAGAAAATCACTGACATTCCTAAACGTTCATTATCGGAGCCCCGGTCACCCGA CCCGAATGAGAAAAGAACCAAGCGGCCCAGAGAAAGCAACGGGAAGCACCCGGTTTACAGAGGGGTCCGAATGCGGGCAT GGGGCAAATGGGTATCCGAAATCCGCGAACCCCGCAAGAAGAACCGGGTCTGGCTCGGCACATTCGCCACCGCGGAGATG GCGGCGCGTGCTCACGACGTCGCTGCTCTCGCCATCAAAGGAAGCTCCGCCATACTCAACTTCCCTGACCTCGCAGGTTC ATTGCCCCGACCCGAGTCCAAATCGCCCAGAGATGTCCAGGCCGCAGCAGCCAAAGCAGCTTCCATGGCGGTTTCCGATT CCAAAACGGCGTCGCATTGCTCTTATTCATCGTCGTCGTCGGAGGAGCTGGGTGAAATAGTGGAGCTGCCGAGGCTGGGA ACGAGTTTTGAAATACCCGACCCGGGAAGCGAGTTGGTGTTTTCCGACCCGGTTGATGGGTGGCCTTATTCACACACTTG GTATCATGAGGGGCAGGGCATTTATGATGATAGGGACTGTGGAGGGTATTATATTGGGGATCAGATTTCAATGCAGGACT CTGAAAGTTTGATTCTTTGTGGCTTTGAGGCTTCATTGTGGCAGTGGCAACATTAA
Protein sequence (LotjaGi4g1v0446300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEQPSSETEKITDIPKRSLSEPRSPDPNEKRTKRPRESNGKHPVYRGVRMRAWGKWVSEIREPRKKNRVWLGTFATAEM AARAHDVAALAIKGSSAILNFPDLAGSLPRPESKSPRDVQAAAAKAASMAVSDSKTASHCSYSSSSSEELGEIVELPRLG TSFEIPDPGSELVFSDPVDGWPYSHTWYHEGQGIYDDRDCGGYYIGDQISMQDSESLILCGFEASLWQWQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 6 | 190 | 185 | 3.0E-76 | – | |
| PANTHER | 6 | 190 | 185 | 3.0E-76 | – | |
| MobiDBLite | 10 | 45 | 36 | - | – | |
| Pfam | 44 | 94 | 51 | 1.5E-12 | ||
| ProSiteProfiles | 45 | 102 | 58 | 23.13 | ||
| SMART | 45 | 108 | 64 | 4.0E-36 | ||
| SUPERFAMILY | 45 | 103 | 59 | 1.96E-21 | ||
| Gene3D | 45 | 103 | 59 | 4.8E-30 | ||
| CDD | 46 | 104 | 59 | 4.51045E-33 | ||
| PRINTS | 46 | 57 | 12 | 2.0E-10 | ||
| PRINTS | 68 | 84 | 17 | 2.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0446300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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