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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0448200 |
| Transcript ID | LotjaGi4g1v0448200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|A0A0R0K5H4|A0A0R0K5H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0448200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82046438..82052498) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATTGAAATTCAAAAGCTTGGGAGAGAGAGGGAGCAAGAGAAGAGAAGAAGGAGAGAAAGAAAACACTCTTCTCTT CGCCGGAACCCTTCCTTCTGCAAATCGCCGACGAGTCTTCGCCGTTCTTCGTTCTCTCTCTCTCGCTCTCTCTGTTTGTG TTGGTTTTCGGTGTTTGGATCGAATTGAAGTCCCAGTTTGGTTTCGAGCGAGCTTGGTTCTTGATTTCAGAGCTGCAAAA TCTCGCGGTTTATTTGCTTTGGATCTGAAAATTCTGTGAATTCGAGCTTGTTTGCTTTTGAATTAAATTATTCAGTGATT GTTAGGTGTAATCGGTGGTTGAAGTGAGGTTTTGTTTTGTGGGGTGTGATGGGGGAAGGTGAAGGAGGAGGTGATTGCCC TCCGAATAATGCATCGTTAGAGGGGGTGCTTCTGCCGTCGAAGAAGCTTGCCAGACAGCTCGATTTTACCGCCTTTGGTG GGGTGCCGCCGGAACCACCACAGCCGCCGCCGACACTGCCTCTTCTTCCTTCAGTCAGGCCTGTGTGAGTTGTTTATCAC TTTCTCCTTTTACTCTCTTCATGTCTCTATTTTGTGTTTTGTTTTAGATGAGGCATTTGGGGATTCTGGGTTTTTGAAAT TCATGAACATAGGTTTTTGTATTTTTTTTATTTTCTCTCTGCTTCATGTTTGAATCAGTTTGAAGTTGTTAATCGGTGTT TCTATCAGGGAAACCATGGTGCTGTGTGTATGGTTTGATTGATATTTCTGTCTGTGATTTTAATACATGTCCATTCTCCA GTGTTTGATTGGAATTTTTGAATTAGTGAATCTCCATGCGTATCGCCAATCTATTTCTGTTTATTATTTGCTTCATCTCT TATGAACATTTTGTTTATCAGCTTATGTTCATGTGCTGTAATTTTTACCTTTGTATTGGAAAGATGATATGAGGTTTAAT ATGGTTTCATGGGCTTAAATTAGTTAGGAAGTTGACTAGATATGATTTTCATTCCGGTTTCAGCTTTCAGTGGTGGGGGA ATGAGACAAAAGTAATCAATAATTACTCTCATATTATGATTAATTTAGTATGTTTTGTTTTAAATAAACCTCAGTTAGAT ATGAGTTTGAATTATTGTTCTTTATTTGATTTATTCAGGAAACCAGAATCTCCAAAATCAAAATCAAGAACCAACTTTGA AATTAAAGACACTACTACTCCGAAGAAGCAAAAGCAGTGCAATTGTAAACATTCTAAATGCTTAAAGCTGTAAGCAAAAT CCTCTCTCACTTTCTCTCTGAACTAGTTTTTGCACCTTTGCAACTTATTGTCTGCAATAAGAAGCTACATGAACCTAACA TAGAAATTTCTTGGGCAGATATTGTGAATGTTTTGCTTCTGGAATATATTGTGACGGTTGCAATTGTGTAAATTGTTATA ACAATGTTGATAATGAAGCGGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAACGCAATCCAAATGCATTTAGGCCAAAA ATTGCAAGCAGCCCTCATGGAACACGTGATATCAGGGTATGCATGTTTAACTCTTTCTGGTCAATTTATTAACTAGAGCA TTATCTGGTTACATTTGATCCACAATGCAAGATGTTGGTCCGTTATCTTTTTATTAATTTTAAGTTCATTTAGGGCTTTT GTGGAAAATGGGCATTTTCGGTATTATGATGCTAGGTCAATTCCGCTCGTGTGAATTTCTTTCGCATCGTGTAGGTTCTC ATTCCGTTAGATGCATGATTCCATAATTTTTGAATTTGGCATTTTCTGCAGGATGAAAAGACCATTTACAATTTTATAGA AATTATCAAGTTTCTTTGCTATTAAATATTCTTATAGGTTGTGATAGTTGTCTTTGTCCCCTACCTGTCAATATGTTTAT GTTACTTTCAACAAGTCATAATTTAGAAAAATTCCTTTTGTGGATCTCCTAAAACGCATTCATTCTCAATGAAACCTATG CTTTGCACTTCTAGTTTCCTTTTCTTTTAATTGTGCAACTTCACAATGGAAAGTGAGTACAAATCAGTAAAGTTTAATTA GAAGTAGCTTGTATAAGTGATATTTTTTCAACTACATATGTATATGATAATGTATGAAGTTGGGCTTTCGATGGTATAAA ATTATGATATGCCAGACCTATGATTAGAAATTTAGAATACCTGGATATATGCTCTAAATCTAAGTTAAATTCTCTGGTCG CAATAGTGATTTTCTTGTTATTGCATTTGTTTTGTCTACTCAGAATATCTTTGAATTTTTTTATTGGCATCCATGTAGGA GGAGGCCGGGGAAATTTTAATATTGGGAAAGCACAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAAAAGTACT GCGAGTGCTTCCAAGCCAATATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGCAGTGAAGAG AGACAGGCTTTGTTCATTGGAGATCAAAATAACAACATAGCGCATATTCAGCAGGCAGCAGCAGCCAATGCTGCCATTAC TGGAGCTATTGGTTCCTCTGGTTTTTCATCGCCACCAGTATCGAGAAAGAGAAAAAGTTCAGAACTCTTCTTTGGGCCTA CCATGAAGGATCCATCCGTTGGCAGACTGGGACAACAGGTAAAATGTGTAATAGTTTTTAATAGTTCAGGGGTTTAATTT AATGTCTGAAATTGGTTACATTGGAGAAATGGATAGAAAGCGCTTATTCATAAAGGACTGGCCTTTTGAGTTTCCTTGTT GCTTAATGTGGGAAATAACAGTATCAACTTCTAATTTTATATGTGAATGAATAGTGACAAATCAAGTCTGTGGCTGTGAA GCCGTGTTTCAAAATATCATGTTGACTTAACATGTGGTCTGACTGATAAAGTTCATCCATAAACTAAATTGGTAGTTCAT ATTAGCTTGCTGCAGTTTAGAGTGAAAGCTCGTATACGTGATTTTTTTATATTGCTTGATTTATATAGAATAGCATTGTG ATTATATTTTTACTTTCCAGGCAAACCATGTCAGAGCTCATGCACCCTCCTCATCCATGTCTCCTATCCCAGGTGCTCGT GTTGGACCTACAAGTGGTCCTTCAAAATTTATGTACAGGTTGGGCTGGTTAAATTCATGAATGAAGATATATCTTCTTAA TTTAGTTATTAACTTAATTATTGTTGAAGGTCCCTTTTAGCAGACATCATTCAACCACAACACCTGAAGGAGCTTTGCTC AGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACACTTACAGGTACGTTGACATTTTAATCTGCCAATAACCATCTGT GCTATTTATTTAAAGGCAATTACTGCTTTCTTTCTTTTTTCATTATATCAATGTATTAGACATAAAAAGAGTTTTCTTCA TTATACCAAGTCTCCAATCACTATAAAGTTTAGAATTTTTATTCGCCACCCTCAATGAATTGTCGAATAGAATTAGCAAG ATAACTATCAAGGAAATCTTATCCCTCACTTTTACTTGCCACGTTTTTTAGGTTCCATCAAATTAGTTTGAGGATTTAGT TTGGTGCATAATAAATTAGAGAATGTGACCTGTTTCTGTTGGTAATTTAGTTACAAACAACAGTTTCCTCTATGGGAAAT GGGAAAAGCATAAAAGGAAGTGTATTCAATTAAAAGTTGTTTCTCGAACATATTTTGAAAGGGAATTTATTATATGATGT CTCGATGTTTGGTAACCCTACCCAGTTGGAATATTTGTTATTCGATAACTGTGGGTTGAATTTTGAACTTTGGATAGAGT CCAACGGCCAACATGCTTGGGCATCCAAAAATCTGTTTTGAATTTGACCTTTTAGTGCATCTAGATCATGATAGTCAAAA TCAGGATTTTAATCCCGAAATCGTACCATCATGCAATCACTGATGTGGATACTGGTTTTGATTGGATGACAAATCCTCAT CTTGTTAAGTCACACACTGGAATTGCGACTTTAATTCCAAAATCGTAGCAAAATTGAATCAAGTGATATCAGCCTTATCT GTGTACATTATTGGTTTATTTTCTCTCACCAGTTATTGTTATTAATATGCACAGACCAGAAAAATTTGATGGATAAGCAT GCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCCACTCAAGAGCAATTACCAAGCCAAAAGGACGTTGATGTTGAGAA AGCTATGGCTGATGATCGCTCAAGTGCAAACCAAGCAGATAAAATCAGCCCTGGTAATTCCAGTTCAGAGGAAGCTGATG TTCCAAAAGGGAGACCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATCCAATGTTCATGACAGCTTCC TCCCCTATTGGAACAATGGCTCGTCAGTGTAACCCGTCTTCGCAATCACCTTATGGGCAAGGAATGACTGAGATCCATGC AGAGCAAGAAAGGATTGTATTGACGAAATTTCGAGATTTTCTTAATAGGGTTATCACCATGGGAGAAATAAATGGCAAGT CTTCCTTTGTAGTTATAGTTTTTGAGTAAAATTTTCATGCACTTTCAGTGTAAAACTTCTTTACACTTGCATCCAATCAT TTTATGCCACATAAGACCCCATTTCAGAAGTGGTTATGTTCTTCAATTAAAATAACAGCTCATTTTCTGATGTGACGACA AATTATTGGATGTCTGTGTAAAGAAGTTTTTCACTGATACAGTGCACTAACACATTAAATCCATAGTTTTTCTCTGCAAA AATTTCATTCTTAGCGTTGAGACTATTGCAAGTAACCCCCTATTAACATTTTTAACATCTGAATAGTGGCTTCTATTTGT TTTCCATTAGTTGGTTTGTTTTATTACCATTGTCATACATGGTTCTTTTCAACTGCTAAAAACCAATCTGTTCATGTTCC ATTGATTCCCCAGCAAGAGCTTGTGCTTAGCACCAAATGTATGAAAATATCCATTTTGCATTGAAGTTAGGTGGTTGTTT GTTATTTGCTAGTTGCTAAAAATGAATTCATATGTATAGAAAATGACCATAGTTGGAAAGTGCACATCAATACTGATAGC CAGATAGCCAACTGGTACTTTTTCAGAACTGCTTTATATGGCTGTGTCAATTGAAATAGTTTTGCAATTTTTAGTTTCCA TAGTCAGAAAGAATTAACATGTTTAGATCTGCTTCTATTTCCACACAATCAATTCTAGCACACAGAAGCTTCTTTTCAGA ATTGATTCTGTCTTGGAAGGATTTCCAAACATGTGCAGTTATGCACACTATACTGTCATATATTTTTGTTACCTGCTTTG TTGTTTAATGTTGCTAATTTCTGTTGCTAATTTCAGAAACAAAGTGTTCATCATTAGCGAGAAGTGAATTAGAATCTCAA AAGGACCCTATCATCAATGGCATTGCAAATGCCAGTACGGAGAGGACGCAGCAGCAGGGAGCCACTAGTAATGGTGTTGC CAAAGCTATTGGTAACTCCATTACTTCAACATCTTTGGTCCCTAGGAGTCCTGTTCCTGAAAATGGGGAGTCTAAGCCGA AGGTCGAAAAATAGATACAAAAGTAATCTAACTTATAGCCTGTTTGCTTCTATGGTGAAATGTTCTAGAATCACTTCTGG TTAAAAGGTACAAGTCTTGGCTTTTGAGTTAACGTACCATTTGGAAGGAAAACTAGAAGAATACCTAGAACTTCTCTGTA ATGTACAAACATTGCCATTCTTCATTTCCTAGCACCTCTTTGATGGGGCTGTGAAGCATGCAGCTAATTAGGATCAATTT TCTTCTTATATAATTTATCTTGAACTGCTTCGGCCATTCATATACATCTAAATTAATTGTTCAGCTTTGACATAGCTTGT AAATGTCAGACTTGTAATTTCACAAAAGAAGCAATGTAGCTTAATTACCCTTTCAGGGCTTTCTTTTGCTTTATTTATTA CTATATTCGTATCAAAGAATTTTACAGTTTAACCAAGAGCGCAGTATAATTTGTGGTTCTG
CDS sequence (LotjaGi4g1v0448200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGGTGAAGGAGGAGGTGATTGCCCTCCGAATAATGCATCGTTAGAGGGGGTGCTTCTGCCGTCGAAGAAGCT TGCCAGACAGCTCGATTTTACCGCCTTTGGTGGGGTGCCGCCGGAACCACCACAGCCGCCGCCGACACTGCCTCTTCTTC CTTCAGTCAGGCCTGTGAAACCAGAATCTCCAAAATCAAAATCAAGAACCAACTTTGAAATTAAAGACACTACTACTCCG AAGAAGCAAAAGCAGTGCAATTGTAAACATTCTAAATGCTTAAAGCTATATTGTGAATGTTTTGCTTCTGGAATATATTG TGACGGTTGCAATTGTGTAAATTGTTATAACAATGTTGATAATGAAGCGGCTAGACGAGAAGCTGTTGAAGCTACTTTAG AACGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATATCAGGGAGGAGGCCGGGGAA ATTTTAATATTGGGAAAGCACAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAAAAGTACTGCGAGTGCTTCCA AGCCAATATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGCAGTGAAGAGAGACAGGCTTTGT TCATTGGAGATCAAAATAACAACATAGCGCATATTCAGCAGGCAGCAGCAGCCAATGCTGCCATTACTGGAGCTATTGGT TCCTCTGGTTTTTCATCGCCACCAGTATCGAGAAAGAGAAAAAGTTCAGAACTCTTCTTTGGGCCTACCATGAAGGATCC ATCCGTTGGCAGACTGGGACAACAGGCAAACCATGTCAGAGCTCATGCACCCTCCTCATCCATGTCTCCTATCCCAGGTG CTCGTGTTGGACCTACAAGTGGTCCTTCAAAATTTATGTACAGGTCCCTTTTAGCAGACATCATTCAACCACAACACCTG AAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACACTTACAGACCAGAAAAATTTGATGGATAA GCATGCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCCACTCAAGAGCAATTACCAAGCCAAAAGGACGTTGATGTTG AGAAAGCTATGGCTGATGATCGCTCAAGTGCAAACCAAGCAGATAAAATCAGCCCTGGTAATTCCAGTTCAGAGGAAGCT GATGTTCCAAAAGGGAGACCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATCCAATGTTCATGACAGC TTCCTCCCCTATTGGAACAATGGCTCGTCAGTGTAACCCGTCTTCGCAATCACCTTATGGGCAAGGAATGACTGAGATCC ATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTCGAGATTTTCTTAATAGGGTTATCACCATGGGAGAAATAAATGAA ACAAAGTGTTCATCATTAGCGAGAAGTGAATTAGAATCTCAAAAGGACCCTATCATCAATGGCATTGCAAATGCCAGTAC GGAGAGGACGCAGCAGCAGGGAGCCACTAGTAATGGTGTTGCCAAAGCTATTGGTAACTCCATTACTTCAACATCTTTGG TCCCTAGGAGTCCTGTTCCTGAAAATGGGGAGTCTAAGCCGAAGGTCGAAAAATAG
Protein sequence (LotjaGi4g1v0448200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEGEGGGDCPPNNASLEGVLLPSKKLARQLDFTAFGGVPPEPPQPPPTLPLLPSVRPVKPESPKSKSRTNFEIKDTTTP KKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDIREEAGE ILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFIGDQNNNIAHIQQAAAANAAITGAIG SSGFSSPPVSRKRKSSELFFGPTMKDPSVGRLGQQANHVRAHAPSSSMSPIPGARVGPTSGPSKFMYRSLLADIIQPQHL KELCSVLVLVSGQAAKTLTDQKNLMDKHAEDQTETSLASSTQEQLPSQKDVDVEKAMADDRSSANQADKISPGNSSSEEA DVPKGRPMSPGTLALMCDEQDPMFMTASSPIGTMARQCNPSSQSPYGQGMTEIHAEQERIVLTKFRDFLNRVITMGEINE TKCSSLARSELESQKDPIINGIANASTERTQQQGATSNGVAKAIGNSITSTSLVPRSPVPENGESKPKVEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 33 | 76 | 44 | - | – | |
| MobiDBLite | 39 | 58 | 20 | - | – | |
| PANTHER | 53 | 526 | 474 | 5.3E-205 | – | |
| PANTHER | 53 | 526 | 474 | 5.3E-205 | ||
| MobiDBLite | 62 | 76 | 15 | - | – | |
| SMART | 81 | 121 | 41 | 4.0E-16 | ||
| ProSiteProfiles | 82 | 206 | 125 | 36.861 | ||
| Pfam | 83 | 118 | 36 | 5.0E-11 | ||
| SMART | 166 | 207 | 42 | 8.4E-20 | ||
| Pfam | 169 | 204 | 36 | 1.0E-12 | ||
| MobiDBLite | 346 | 414 | 69 | - | – | |
| MobiDBLite | 368 | 382 | 15 | - | – | |
| MobiDBLite | 384 | 398 | 15 | - | – | |
| MobiDBLite | 505 | 538 | 34 | - | – | |
| MobiDBLite | 505 | 551 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0448200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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