Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0448200 |
| Transcript ID | LotjaGi4g1v0448200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tesmin/TSO1-like CXC domain protein; TAIR: AT4G29000.1 Tesmin/TSO1-like CXC domain-containing protein; Swiss-Prot: sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5; TrEMBL-Plants: tr|A0A0L9VSR5|A0A0L9VSR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0448200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82046476..82052554) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAGAAGAGAAGAAGGAGAGAAAGAAAACACTCTTCTCTTCGCCGGAACCCTTCCTTCTGCAAATCGCCGACGAGTCT TCGCCGTTCTTCGTTCTCTCTCTCTCGCTCTCTCTGTTTGTGTTGGTTTTCGGTGTTTGGATCGAATTGAAGTCCCAGTT TGGTTTCGAGCGAGCTTGGTTCTTGATTTCAGAGCTGCAAAATCTCGCGGTTTATTTGCTTTGGATCTGAAAATTCTGTG AATTCGAGCTTGTTTGCTTTTGAATTAAATTATTCAGTGATTGTTAGGTGTAATCGGTGGTTGAAGTGAGGTTTTGTTTT GTGGGGTGTGATGGGGGAAGGTGAAGGAGGAGGTGATTGCCCTCCGAATAATGCATCGTTAGAGGGGGTGCTTCTGCCGT CGAAGAAGCTTGCCAGACAGCTCGATTTTACCGCCTTTGGTGGGGTGCCGCCGGAACCACCACAGCCGCCGCCGACACTG CCTCTTCTTCCTTCAGTCAGGCCTGTGTGAGTTGTTTATCACTTTCTCCTTTTACTCTCTTCATGTCTCTATTTTGTGTT TTGTTTTAGATGAGGCATTTGGGGATTCTGGGTTTTTGAAATTCATGAACATAGGTTTTTGTATTTTTTTTATTTTCTCT CTGCTTCATGTTTGAATCAGTTTGAAGTTGTTAATCGGTGTTTCTATCAGGGAAACCATGGTGCTGTGTGTATGGTTTGA TTGATATTTCTGTCTGTGATTTTAATACATGTCCATTCTCCAGTGTTTGATTGGAATTTTTGAATTAGTGAATCTCCATG CGTATCGCCAATCTATTTCTGTTTATTATTTGCTTCATCTCTTATGAACATTTTGTTTATCAGCTTATGTTCATGTGCTG TAATTTTTACCTTTGTATTGGAAAGATGATATGAGGTTTAATATGGTTTCATGGGCTTAAATTAGTTAGGAAGTTGACTA GATATGATTTTCATTCCGGTTTCAGCTTTCAGTGGTGGGGGAATGAGACAAAAGTAATCAATAATTACTCTCATATTATG ATTAATTTAGTATGTTTTGTTTTAAATAAACCTCAGTTAGATATGAGTTTGAATTATTGTTCTTTATTTGATTTATTCAG GAAACCAGAATCTCCAAAATCAAAATCAAGAACCAACTTTGAAATTAAAGACACTACTACTCCGAAGAAGCAAAAGCAGT GCAATTGTAAACATTCTAAATGCTTAAAGCTGTAAGCAAAATCCTCTCTCACTTTCTCTCTGAACTAGTTTTTGCACCTT TGCAACTTATTGTCTGCAATAAGAAGCTACATGAACCTAACATAGAAATTTCTTGGGCAGATATTGTGAATGTTTTGCTT CTGGAATATATTGTGACGGTTGCAATTGTGTAAATTGTTATAACAATGTTGATAATGAAGCGGCTAGACGAGAAGCTGTT GAAGCTACTTTAGAACGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATATCAGGGT ATGCATGTTTAACTCTTTCTGGTCAATTTATTAACTAGAGCATTATCTGGTTACATTTGATCCACAATGCAAGATGTTGG TCCGTTATCTTTTTATTAATTTTAAGTTCATTTAGGGCTTTTGTGGAAAATGGGCATTTTCGGTATTATGATGCTAGGTC AATTCCGCTCGTGTGAATTTCTTTCGCATCGTGTAGGTTCTCATTCCGTTAGATGCATGATTCCATAATTTTTGAATTTG GCATTTTCTGCAGGATGAAAAGACCATTTACAATTTTATAGAAATTATCAAGTTTCTTTGCTATTAAATATTCTTATAGG TTGTGATAGTTGTCTTTGTCCCCTACCTGTCAATATGTTTATGTTACTTTCAACAAGTCATAATTTAGAAAAATTCCTTT TGTGGATCTCCTAAAACGCATTCATTCTCAATGAAACCTATGCTTTGCACTTCTAGTTTCCTTTTCTTTTAATTGTGCAA CTTCACAATGGAAAGTGAGTACAAATCAGTAAAGTTTAATTAGAAGTAGCTTGTATAAGTGATATTTTTTCAACTACATA TGTATATGATAATGTATGAAGTTGGGCTTTCGATGGTATAAAATTATGATATGCCAGACCTATGATTAGAAATTTAGAAT ACCTGGATATATGCTCTAAATCTAAGTTAAATTCTCTGGTCGCAATAGTGATTTTCTTGTTATTGCATTTGTTTTGTCTA CTCAGAATATCTTTGAATTTTTTTATTGGCATCCATGTAGGAGGAGGCCGGGGAAATTTTAATATTGGGAAAGCACAACA AAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAAAAGTACTGCGAGTGCTTCCAAGCCAATATTCTTTGTTCTGAAAAT TGTAAATGCATGGATTGCAAAAACTTTGAGGGCAGTGAAGAGAGACAGGCTTTGTTCATTGGAGATCAAAATAACAACAT AGCGCATATTCAGCAGGCAGCAGCAGCCAATGCTGCCATTACTGGAGCTATTGGTTCCTCTGGTTTTTCATCGCCACCAG TATCGAGAAAGAGAAAAAGTTCAGAACTCTTCTTTGGGCCTACCATGAAGGATCCATCCGTTGGCAGACTGGGACAACAG GTAAAATGTGTAATAGTTTTTAATAGTTCAGGGGTTTAATTTAATGTCTGAAATTGGTTACATTGGAGAAATGGATAGAA AGCGCTTATTCATAAAGGACTGGCCTTTTGAGTTTCCTTGTTGCTTAATGTGGGAAATAACAGTATCAACTTCTAATTTT ATATGTGAATGAATAGTGACAAATCAAGTCTGTGGCTGTGAAGCCGTGTTTCAAAATATCATGTTGACTTAACATGTGGT CTGACTGATAAAGTTCATCCATAAACTAAATTGGTAGTTCATATTAGCTTGCTGCAGTTTAGAGTGAAAGCTCGTATACG TGATTTTTTTATATTGCTTGATTTATATAGAATAGCATTGTGATTATATTTTTACTTTCCAGGCAAACCATGTCAGAGCT CATGCACCCTCCTCATCCATGTCTCCTATCCCAGGTGCTCGTGTTGGACCTACAAGTGGTCCTTCAAAATTTATGTACAG GTTGGGCTGGTTAAATTCATGAATGAAGATATATCTTCTTAATTTAGTTATTAACTTAATTATTGTTGAAGGTCCCTTTT AGCAGACATCATTCAACCACAACACCTGAAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACAC TTACAGGTACGTTGACATTTTAATCTGCCAATAACCATCTGTGCTATTTATTTAAAGGCAATTACTGCTTTCTTTCTTTT TTCATTATATCAATGTATTAGACATAAAAAGAGTTTTCTTCATTATACCAAGTCTCCAATCACTATAAAGTTTAGAATTT TTATTCGCCACCCTCAATGAATTGTCGAATAGAATTAGCAAGATAACTATCAAGGAAATCTTATCCCTCACTTTTACTTG CCACGTTTTTTAGGTTCCATCAAATTAGTTTGAGGATTTAGTTTGGTGCATAATAAATTAGAGAATGTGACCTGTTTCTG TTGGTAATTTAGTTACAAACAACAGTTTCCTCTATGGGAAATGGGAAAAGCATAAAAGGAAGTGTATTCAATTAAAAGTT GTTTCTCGAACATATTTTGAAAGGGAATTTATTATATGATGTCTCGATGTTTGGTAACCCTACCCAGTTGGAATATTTGT TATTCGATAACTGTGGGTTGAATTTTGAACTTTGGATAGAGTCCAACGGCCAACATGCTTGGGCATCCAAAAATCTGTTT TGAATTTGACCTTTTAGTGCATCTAGATCATGATAGTCAAAATCAGGATTTTAATCCCGAAATCGTACCATCATGCAATC ACTGATGTGGATACTGGTTTTGATTGGATGACAAATCCTCATCTTGTTAAGTCACACACTGGAATTGCGACTTTAATTCC AAAATCGTAGCAAAATTGAATCAAGTGATATCAGCCTTATCTGTGTACATTATTGGTTTATTTTCTCTCACCAGTTATTG TTATTAATATGCACAGACCAGAAAAATTTGATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCCAC TCAAGAGCAATTACCAAGCCAAAAGGACGTTGATGTTGAGAAAGCTATGGCTGATGATCGCTCAAGTGCAAACCAAGCAG ATAAAATCAGCCCTGGTAATTCCAGTTCAGAGGAAGCTGATGTTCCAAAAGGGAGACCAATGTCTCCTGGAACTTTAGCA TTGATGTGCGATGAGCAAGATCCAATGTTCATGACAGCTTCCTCCCCTATTGGAACAATGGCTCGTCAGTGTAACCCGTC TTCGCAATCACCTTATGGGCAAGGAATGACTGAGATCCATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTCGAGATT TTCTTAATAGGGTTATCACCATGGGAGAAATAAATGGCAAGTCTTCCTTTGTAGTTATAGTTTTTGAGTAAAATTTTCAT GCACTTTCAGTGTAAAACTTCTTTACACTTGCATCCAATCATTTTATGCCACATAAGACCCCATTTCAGAAGTGGTTATG TTCTTCAATTAAAATAACAGCTCATTTTCTGATGTGACGACAAATTATTGGATGTCTGTGTAAAGAAGTTTTTCACTGAT ACAGTGCACTAACACATTAAATCCATAGTTTTTCTCTGCAAAAATTTCATTCTTAGCGTTGAGACTATTGCAAGTAACCC CCTATTAACATTTTTAACATCTGAATAGTGGCTTCTATTTGTTTTCCATTAGTTGGTTTGTTTTATTACCATTGTCATAC ATGGTTCTTTTCAACTGCTAAAAACCAATCTGTTCATGTTCCATTGATTCCCCAGCAAGAGCTTGTGCTTAGCACCAAAT GTATGAAAATATCCATTTTGCATTGAAGTTAGGTGGTTGTTTGTTATTTGCTAGTTGCTAAAAATGAATTCATATGTATA GAAAATGACCATAGTTGGAAAGTGCACATCAATACTGATAGCCAGATAGCCAACTGGTACTTTTTCAGAACTGCTTTATA TGGCTGTGTCAATTGAAATAGTTTTGCAATTTTTAGTTTCCATAGTCAGAAAGAATTAACATGTTTAGATCTGCTTCTAT TTCCACACAATCAATTCTAGCACACAGAAGCTTCTTTTCAGAATTGATTCTGTCTTGGAAGGATTTCCAAACATGTGCAG TTATGCACACTATACTGTCATATATTTTTGTTACCTGCTTTGTTGTTTAATGTTGCTAATTTCTGTTGCTAATTTCAGAA ACAAAGTGTTCATCATTAGCGAGAAGTGAATTAGAATCTCAAAAGGACCCTATCATCAATGGCATTGCAAATGCCAGTAC GGAGAGGACGCAGCAGCAGGGAGCCACTAGTAATGGTGTTGCCAAAGCTATTGGTAACTCCATTACTTCAACATCTTTGG TCCCTAGGAGTCCTGTTCCTGAAAATGGGGAGTCTAAGCCGAAGGTCGAAAAATAGATACAAAAGTAATCTAACTTATAG CCTGTTTGCTTCTATGGTGAAATGTTCTAGAATCACTTCTGGTTAAAAGGTACAAGTCTTGGCTTTTGAGTTAACGTACC ATTTGGAAGGAAAACTAGAAGAATACCTAGAACTTCTCTGTAATGTACAAACATTGCCATTCTTCATTTCCTAGCACCTC TTTGATGGGGCTGTGAAGCATGCAGCTAATTAGGATCAATTTTCTTCTTATATAATTTATCTTGAACTGCTTCGGCCATT CATATACATCTAAATTAATTGTTCAGCTTTGACATAGCTTGTAAATGTCAGACTTGTAATTTCACAAAAGAAGCAATGTA GCTTAATTACCCTTTCAGGGCTTTCTTTTGCTTTATTTATTACTATATTCGTATCAAAGAATTTTACAGTTTAACCAAGA GCGCAGTATAATTTGTGGTTCTGTTGCATTCTGGTCTTATCCAATTTATACATGATAATTTAGTTGCAATCTCTAAAGA
CDS sequence (LotjaGi4g1v0448200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGGTGAAGGAGGAGGTGATTGCCCTCCGAATAATGCATCGTTAGAGGGGGTGCTTCTGCCGTCGAAGAAGCT TGCCAGACAGCTCGATTTTACCGCCTTTGGTGGGGTGCCGCCGGAACCACCACAGCCGCCGCCGACACTGCCTCTTCTTC CTTCAGTCAGGCCTGTGAAACCAGAATCTCCAAAATCAAAATCAAGAACCAACTTTGAAATTAAAGACACTACTACTCCG AAGAAGCAAAAGCAGTGCAATTGTAAACATTCTAAATGCTTAAAGCTATATTGTGAATGTTTTGCTTCTGGAATATATTG TGACGGTTGCAATTGTGTAAATTGTTATAACAATGTTGATAATGAAGCGGCTAGACGAGAAGCTGTTGAAGCTACTTTAG AACGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATATCAGGGAGGAGGCCGGGGAA ATTTTAATATTGGGAAAGCACAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAAAAGTACTGCGAGTGCTTCCA AGCCAATATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGCAGTGAAGAGAGACAGGCTTTGT TCATTGGAGATCAAAATAACAACATAGCGCATATTCAGCAGGCAGCAGCAGCCAATGCTGCCATTACTGGAGCTATTGGT TCCTCTGGTTTTTCATCGCCACCAGTATCGAGAAAGAGAAAAAGTTCAGAACTCTTCTTTGGGCCTACCATGAAGGATCC ATCCGTTGGCAGACTGGGACAACAGGCAAACCATGTCAGAGCTCATGCACCCTCCTCATCCATGTCTCCTATCCCAGGTG CTCGTGTTGGACCTACAAGTGGTCCTTCAAAATTTATGTACAGGTCCCTTTTAGCAGACATCATTCAACCACAACACCTG AAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACACTTACAGACCAGAAAAATTTGATGGATAA GCATGCAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCCACTCAAGAGCAATTACCAAGCCAAAAGGACGTTGATGTTG AGAAAGCTATGGCTGATGATCGCTCAAGTGCAAACCAAGCAGATAAAATCAGCCCTGGTAATTCCAGTTCAGAGGAAGCT GATGTTCCAAAAGGGAGACCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATCCAATGTTCATGACAGC TTCCTCCCCTATTGGAACAATGGCTCGTCAGTGTAACCCGTCTTCGCAATCACCTTATGGGCAAGGAATGACTGAGATCC ATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTCGAGATTTTCTTAATAGGGTTATCACCATGGGAGAAATAAATGGC AAGTCTTCCTTTGTAGTTATAGTTTTTGAGTAA
Protein sequence (LotjaGi4g1v0448200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEGEGGGDCPPNNASLEGVLLPSKKLARQLDFTAFGGVPPEPPQPPPTLPLLPSVRPVKPESPKSKSRTNFEIKDTTTP KKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDIREEAGE ILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFIGDQNNNIAHIQQAAAANAAITGAIG SSGFSSPPVSRKRKSSELFFGPTMKDPSVGRLGQQANHVRAHAPSSSMSPIPGARVGPTSGPSKFMYRSLLADIIQPQHL KELCSVLVLVSGQAAKTLTDQKNLMDKHAEDQTETSLASSTQEQLPSQKDVDVEKAMADDRSSANQADKISPGNSSSEEA DVPKGRPMSPGTLALMCDEQDPMFMTASSPIGTMARQCNPSSQSPYGQGMTEIHAEQERIVLTKFRDFLNRVITMGEING KSSFVVIVFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 33 | 76 | 44 | - | – | |
| MobiDBLite | 39 | 58 | 20 | - | – | |
| PANTHER | 53 | 479 | 427 | 2.8E-193 | ||
| PANTHER | 53 | 479 | 427 | 2.8E-193 | – | |
| MobiDBLite | 62 | 76 | 15 | - | – | |
| SMART | 81 | 121 | 41 | 4.0E-16 | ||
| ProSiteProfiles | 82 | 206 | 125 | 36.861 | ||
| Pfam | 83 | 118 | 36 | 4.4E-11 | ||
| SMART | 166 | 207 | 42 | 8.4E-20 | ||
| Pfam | 169 | 204 | 36 | 8.7E-13 | ||
| MobiDBLite | 346 | 413 | 68 | - | – | |
| MobiDBLite | 368 | 382 | 15 | - | – | |
| MobiDBLite | 384 | 398 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0448200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…