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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0450900 |
| Transcript ID | LotjaGi4g1v0450900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G24450.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|G7KNF6|G7KNF6_MEDTR Heavy metal transport/detoxification superfamily protein; Found in the gene: LotjaGi4g1v0450900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82295644..82298022) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTTGCACTGTTTCCATATGTCAATCAACTATGCATATATGCCTTTAGGGGGAAGTAACATGATGCTCAAAACTATT TAACAATTTGAGGCATGCCATGATCTATTAAGATATCCATTTTCTTTTGTCTTTTGTTTTCTATTTGCATCACAGTTGTA TTATACCAAATATGCCTTGACATTGTTCCTTTATATTTGACCTCTTCTCCGTGCTTATTGTTCATTAATTTAGATGTTAT GCTTATCCACATGGAAATATATGCATATTATTTTCCTCCAGCCTGGGCTTAAACCCCATCACATTCACATATAAAGTTTG TAATTCCTTCTTTCCATCCATGATCACTCACTGTTTCTTCCTTTTCTTATCTCTCTCTTCTGATCACATAATCTCCTCTT TTAATACAATTCTGTTTCTTCCATTGCTAAAGTAGTCAGTGAGGCCCTTCTCAAACTATGTTAATTTCCCCTTTCATGGC ACTTTTATGGTTTGTATCTGTCTATAGTAGACTTTAATTTGGTCAGTATTCAAGAAGTTTATCACATTACAAACAAACTC TAATAGCACTTGGTCTATTTTTTGTATTGTTCTGGATAAAACTCATTGGTTCTGTGAAGTTTGGTTTTCCCAATAAAATT TGGCCTTAAGCTTCTTTGTTTTCCCTATGGTTGTAGTCACTTTCAACCTTTTCATTGAGTATTATAACAAGTATTTGGTT GAGACTTGAGCTAGAGGTTAGAGACTTAGAGTAGTGACATAAAAAAGAACTTCTTTCAGCTCAGATGGGGAAAATTGGTA GAATGTTGGACACTTTCTGTCTTTCTTCTTGTTCAAATCCCTGCTTCTGTGTAAATTCCATAGAATTTGAAGATGAATTT GAGAGCAAGCCTTTGATTGCAAATGGCAGTGATCATAAACTGAGACTGAAGGATGTTGTTGCTGGAAAGCAAACATTGGG TTTTCAATTGAAGCCCAAGGTGAGGTTTTTCTTCTCTTTTTCAGCATTGATGTTTCTTTAGCAACACCACTCTTATATGC ACTTTAGATCCTCTAATTTGTACTGTGTGATTTTACTCCTCAAATAAAATTTTGAGCACATTTATTCGCCAACTAGGGGG AGCAACAATGTAATCAAGCCTATAATTTATTAGACCACTTGTTGGGTGTAATCTGATATCATCTTGTTCCTCAAATATGC AGATTGTGATATTGAGGGTGTCAATGCATTGCCATGCCTGTGCAAGGAAAGTTGAGAAACATATCTCAAAGCTGGAAGGT GAGGATAATCCAACTTCTTTTTTTCATTTAAAAATGTAGCTGCATTTTTTTCTTCTGTCAATTCAGGCCATAACAAACTA ATTTAGCAGTATCTTTGGACCAACTTATTTTCATTATGATCAATTCTGGCACCTCGAAGCTACTAAGAAAAAGCTCTTCC TATAACTGATCTTGCTTTTAGAATTAATTATAGAAGATTACTTAAATAGAGCATGTGAGGTTTATATTATTTTCCTTAAA CTTGCTCTATTTGTGCCTCTGTTGTGTTTACTTCTAAGTTTCAACAATTCATCTGAAGCTGAACCAAATTCGTTTGGTTA TTGTTGAGACTATCCATCAAAGGAGAGAAAATTATTTTTAGTGCTCCTGAGTCCTGATAAATGCTAAGAAACAGTCAACA TTATTATTGATTTCCCTCATTATCAGGAAGTACTTATGTGTTATATATAATGCTAGTATTTTGTTTGCTTTGAAACTATT TCTAATAACTGCTTCTTTCTACTTATCAACAGGAGTGAGCTCATACAAGGTAGATCTGGTTAATAAAACTGTAGTTGTTA TTGGTGACATTCTCCCTATGGAAGTGTTGGAAAGTGTGTCTAAAGTGAAAAATGCACAGCTTTGGAATCCTACATCATGC TAAGGGGGAAAATTTCTGTGCAAACCACCACCAGCCTCAGCTGATTGGACCAAGACAAAAAAGTTGTCATAAAAGGAAGG AACTCAAATTTCACTATGCCATTTTGTTGTTATTATAAATATATAATAAATATTAATATCCTGTGCCATGTTCCAGCAAT ACTCTTCCATTGATGTTTCTGCTATGTGACTGCACATCTTTTAAATCAAGGTTGAGGTTATGATGAAAGACATCAGCATC ATCTAGGTTTAAAATTATGCGATTACGTTGAATTGGAGATAAATGCAGATTTATTCGACCACCATACTACATTGAAGAGA CTTAAAAACCATTGATGATGTGACTGTTATCAAAGTTACACACCTGACCAGAATGTAAAGCTATGTTAAACATTAACAGC TATGGCTATGTTTGTTTTTTTGTTTGCACCCCTCAATGTGCTTTTGACCTGCACTGAAC
CDS sequence (LotjaGi4g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAATTGGTAGAATGTTGGACACTTTCTGTCTTTCTTCTTGTTCAAATCCCTGCTTCTGTGTAAATTCCATAGA ATTTGAAGATGAATTTGAGAGCAAGCCTTTGATTGCAAATGGCAGTGATCATAAACTGAGACTGAAGGATGTTGTTGCTG GAAAGCAAACATTGGGTTTTCAATTGAAGCCCAAGATTGTGATATTGAGGGTGTCAATGCATTGCCATGCCTGTGCAAGG AAAGTTGAGAAACATATCTCAAAGCTGGAAGGAGTGAGCTCATACAAGGTAGATCTGGTTAATAAAACTGTAGTTGTTAT TGGTGACATTCTCCCTATGGAAGTGTTGGAAAGTGTGTCTAAAGTGAAAAATGCACAGCTTTGGAATCCTACATCATGCT AA
Protein sequence (LotjaGi4g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKIGRMLDTFCLSSCSNPCFCVNSIEFEDEFESKPLIANGSDHKLRLKDVVAGKQTLGFQLKPKIVILRVSMHCHACAR KVEKHISKLEGVSSYKVDLVNKTVVVIGDILPMEVLESVSKVKNAQLWNPTSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 130 | 127 | 3.6E-59 | – | |
| PANTHER | 4 | 130 | 127 | 3.6E-59 | – | |
| Gene3D | 64 | 126 | 63 | 3.2E-16 | – | |
| SUPERFAMILY | 64 | 122 | 59 | 3.4E-15 | ||
| ProSiteProfiles | 65 | 122 | 58 | 12.606 | ||
| CDD | 69 | 121 | 53 | 1.29317E-12 | ||
| Pfam | 69 | 121 | 53 | 4.3E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0450900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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