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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0453300 |
| Transcript ID | LotjaGi4g1v0453300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G73830.1 BR enhanced expression 3; Swiss-Prot: sp|Q8GWK7|BEE3_ARATH Transcription factor BEE 3; TrEMBL-Plants: tr|C0JP27|C0JP27_LOTJA Putative basic helix-loop-helix protein BHLH5; Found in the gene: LotjaGi4g1v0453300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82530770..82532758) extracted from Lotus japonicus Gifu genome v1.2.
AGCATGGGCCCATATTGTTAACAAACATTTTCCCCTGTATATGGGGCCAACCAGGGGGAACACAACTACAGAGCCTTGAG CTGCCACATGCTGCTTCTATAATTCATCAATGTAGCTGCAATGTCACATTATAAATACCACTGTCACCCACATTATCCAG ATACAACCACTTAAAAACCTTACCAAAACTCATTTTTGAAAAATCACATCATGGCTGAATTCACTGCAGATTGGCAAAGT CTTAGACCCTCATCATTTCCTTTCTTAGATATTGATAACATGGAACTACTAAATCATCTCAAAGGGGTGAATTCACATAC CTTGGACAACTCAATTTTGAACATGCAGAACTTGATGCAATTCTCCAGTGGCAGCTTCTTTTGCTCCTCAGAACCAGAAT TTCAAGGAAACTTGGAAGAAAATATGCCAGGCCTTGTGCATCATTTCAATCAAAATGCAGCTCCAGTTTCACCACCTATT TCTTCAGTAGAAAATGAAGGTAGAAAGAGGAAAGCAACCAACATGAGTGGACCTAGTTCTGCAAATTCAACCCCTTCAGT TTCTGAGAGTGAAAGCAAGATCAAAAATGTAAATTTTCTTTCTATTATTCAGTCATGATAAAGGAACAAGATATACTGCA TGTTTGGAAATTCGTTCTACAATTGGTTCTGAATTTAAATCAATTCTAGAAGAAGCTTACGTGAGAAGCTTCTGTGTTTC GGAATTGATTCTAAGAAAAAATAAGTTGATCCTAACATGCATATGCTAAAGTTCCTTGAACTGGTTTTCATGGAACTTTT ACTTTTGACTTGTATGCAACAGAGATTGATCTTTTTATTTATTCTGCATGTTTTCAGTGCTCTGGAAGAGGCAAGAGAGT AAAAAAGAACATGATGGAAGAGGAAGACAAGAAATCAACACAAGTAGTTCATGTTAGAGCCAGAAGAGGTCAAGCTACTG ATAGTCACAGTTTAGCAGAAAGGGTATAATTCTTGAATCCCCTTCTTCAAGCCAAGATTTTTTTTTTGCATCAAATCATT AAATATGACTAAATTTAGATCATTTTTATGTTGTTTAAGATGAATTTGGACTAATATCTTTTCATTTATTGCGATTCAGG TTAGAAGAGGTAAAATCAATGAAAAACTTAAGTGCTTGCAAAACATTGTCCCAGGATGTTACAAGGTAAAGAAAAAATTC TTTTCCAAATCATGGCATGTTTCTAATTTTGATTCAATTTCTGACTATTTTTCTTTTTCACATTAATAAACTTGTAGACT ATGGGTATGGCAATAATGTTGGATGAGATCATAAACTATGTCCAGTCCTTGCAACATCAAGTGGAGGTAAGTGATCAAAA GTCTAAAGAAGTAGCATTTTATTTATTGCTAGCAAAAGATATACATAATCTTAATATATATGTTTGGTTTGAGTGCAGTT CCTCTCTATGAAGCTCACTGCAGCAAGCACCTTTTATGACTTCAATTCAGAGATAAATTCTTTAGAGGCAATGCAGGTTG GAATCCTGAATATTTCACTGTCTTATGTTACTGAAAATGAACATTTTGGTTTGCTCGTTTTTACCGCATGTTTGGATCAA CTTTCGTTTCTCACACAATTTCTCTTCAGAATTGATTCTGGTTTTAGAATCAATTGTAGAATTATTTATTTGTTTATTGA TATATTTGTTGTTTTATGGCAGAGAGCAAGGGTATCCGAGGCAAAAGAGTTGGCAAAGTACGTGACAGAAGGATATGAAG GAGTTTCTTGCTTTCAACCAACTTGGCCTTAATTCCAATGACTTCTATTTTGTAATTTTTAACTCAGAAACCACACGAAT CAAAAAGAAGCTCCATTCGCACTTCTTACTTTACAATTTTATAAGATCAAATTGTTTCCACTCTTTGGTAGACATTCTCA TTTGTAAAATCCCATCAAACATGTGAAGAAATGAATGAAAGTGATAAAAAGCCTACATTTCATATATTT
CDS sequence (LotjaGi4g1v0453300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAATTCACTGCAGATTGGCAAAGTCTTAGACCCTCATCATTTCCTTTCTTAGATATTGATAACATGGAACTACT AAATCATCTCAAAGGGGTGAATTCACATACCTTGGACAACTCAATTTTGAACATGCAGAACTTGATGCAATTCTCCAGTG GCAGCTTCTTTTGCTCCTCAGAACCAGAATTTCAAGGAAACTTGGAAGAAAATATGCCAGGCCTTGTGCATCATTTCAAT CAAAATGCAGCTCCAGTTTCACCACCTATTTCTTCAGTAGAAAATGAAGGTAGAAAGAGGAAAGCAACCAACATGAGTGG ACCTAGTTCTGCAAATTCAACCCCTTCAGTTTCTGAGAGTGAAAGCAAGATCAAAAATTGCTCTGGAAGAGGCAAGAGAG TAAAAAAGAACATGATGGAAGAGGAAGACAAGAAATCAACACAAGTAGTTCATGTTAGAGCCAGAAGAGGTCAAGCTACT GATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGTAAAATCAATGAAAAACTTAAGTGCTTGCAAAACATTGTCCCAGG ATGTTACAAGACTATGGGTATGGCAATAATGTTGGATGAGATCATAAACTATGTCCAGTCCTTGCAACATCAAGTGGAGT TCCTCTCTATGAAGCTCACTGCAGCAAGCACCTTTTATGACTTCAATTCAGAGATAAATTCTTTAGAGGCAATGCAGAGA GCAAGGGTATCCGAGGCAAAAGAGTTGGCAAAGTACGTGACAGAAGGATATGAAGGAGTTTCTTGCTTTCAACCAACTTG GCCTTAA
Protein sequence (LotjaGi4g1v0453300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEFTADWQSLRPSSFPFLDIDNMELLNHLKGVNSHTLDNSILNMQNLMQFSSGSFFCSSEPEFQGNLEENMPGLVHHFN QNAAPVSPPISSVENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQAT DSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSEINSLEAMQR ARVSEAKELAKYVTEGYEGVSCFQPTWP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 268 | 267 | 5.0E-105 | – | |
| PANTHER | 2 | 268 | 267 | 5.0E-105 | ||
| MobiDBLite | 83 | 164 | 82 | - | – | |
| MobiDBLite | 102 | 124 | 23 | - | – | |
| MobiDBLite | 125 | 164 | 40 | - | – | |
| Gene3D | 155 | 227 | 73 | 5.8E-12 | ||
| CDD | 156 | 213 | 58 | 3.55606E-9 | ||
| SUPERFAMILY | 156 | 226 | 71 | 6.02E-16 | ||
| ProSiteProfiles | 158 | 208 | 51 | 14.691 | ||
| Pfam | 162 | 209 | 48 | 6.0E-5 | ||
| SMART | 164 | 214 | 51 | 7.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0453300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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