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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455300 |
| Transcript ID | LotjaGi4g1v0455300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 3; TAIR: AT2G01630.3 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|V7CSR1|V7CSR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0455300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82703755..82705258) extracted from Lotus japonicus Gifu genome v1.2.
GCTTTCATTGGTGTCAACATTGGTTCAGATGTATCTAACATGCCAAGTCCAACAGAGATTGTGACCCTTCTTAAAGCTCA AAGCATCCAACATGTCAGACTCTATGACGCCGACCGAGCCTTGCTTATTGCTCTCGCTAACACTGGAATACGCGTAACTG TTTCTGTTCCCAACGACCAGCTTCTCGGCATTGGTCAGTCCAATGACACTGCCGCAAATTGGGTTTCTCGAAACGTCATA GCTCATGTTCCTGCTACCAACATTACTACCATAGCTGTCGGATCTGAGGTTCTAACTATCATCCCAAATGCAGCCCCCAT TCTAGTCTCTGCCATGAATTTCATTCATTCTGCTCTTGTGGCTGCAAAGTTGGATAGCCAAATTAAAGTCTCGACTCCAC ACCCTTCTTCTATCATCCTTGACTCGTTCCCACCTTCGCAAGCATTTTTCAACCGAACTTGGAATCCGGTCATGGTTCCT TTGCTTAAATTTCTTCAAACAACAGGTTCATGTCTTATGCTCAATGTATACCCGTATTACGATTACCAGCTATCCAACGA TGCAATCCCGCTCGATTATGCTTTATTCCGCCCCCTACCGCCCAATAAGGAAGCTGTTGATGCCAACACTCTCCTGCATT ACACTAATGTTTTTGATGCAATTGTTGATGCTGCTTATTTTGCAATGTCTGACTTGAACTTCACCAATATCCCTGTTCTG GTCACTGAATCAGGATGGCCCTCAAAAGGCGACTCATCTGAGCCGGATGCAACCATTGATAATGCTAACACTTACAACAG TAACTTGATCAGACATGTTCTTAACAATACAGGAACTCCGAAACACCCGGGAATTGCAGTTAGTACATACATTTATGAGC TTTACAATGAAGACTTGAGATCAGGTCCAGTCTCAGAAAAGAACTGGGGGCTATTTTTTGCTAATGGAGGACCAGTGTAT ACCTTACACTTAACTGGTGTTGGTACTATATTTGCAAATGATACGACAAACCAAACATTTTGTATCTCAAAGCGTAATGC AGATCCTAAGATGCTGCAGGCAGCACTTGATTGGGCTTGTGGACCAGGGAAGGTTGATTGTTCCCCTTTGCTGCAGGGTC AACCATGTCATGAACCAGATAATGTAGTTGCGCATGCTACATACGCTTTCAATGCTTATTATCAGAAGATGGCTAAGTCT CCTGGGACCTGCGATTTCAAAGGGGTTGCCGCTATCACTTCCACAGACCCAAGTATGGCTTGCACACTCATACACAAATA TATATATTTGATTTGGCTGCAAAAGTATGTGTACATTTATTTGTAAAGCCGGTAGAACTCTATGACTAGAGGCAATAAGG AAATATGCATGGTTTCACCTTAGTACTAAACTAGGTTTTGATAAACTTACAAGTAAGGTGAATTACAATGAAATCAGTTT TAGTCATTTACTTCTCTAGTTCTATATATCTTCAATAGCACAATTTTGGTCTCTTCAATTTTAA
CDS sequence (LotjaGi4g1v0455300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAGTCCAACAGAGATTGTGACCCTTCTTAAAGCTCAAAGCATCCAACATGTCAGACTCTATGACGCCGACCGAGC CTTGCTTATTGCTCTCGCTAACACTGGAATACGCGTAACTGTTTCTGTTCCCAACGACCAGCTTCTCGGCATTGGTCAGT CCAATGACACTGCCGCAAATTGGGTTTCTCGAAACGTCATAGCTCATGTTCCTGCTACCAACATTACTACCATAGCTGTC GGATCTGAGGTTCTAACTATCATCCCAAATGCAGCCCCCATTCTAGTCTCTGCCATGAATTTCATTCATTCTGCTCTTGT GGCTGCAAAGTTGGATAGCCAAATTAAAGTCTCGACTCCACACCCTTCTTCTATCATCCTTGACTCGTTCCCACCTTCGC AAGCATTTTTCAACCGAACTTGGAATCCGGTCATGGTTCCTTTGCTTAAATTTCTTCAAACAACAGGTTCATGTCTTATG CTCAATGTATACCCGTATTACGATTACCAGCTATCCAACGATGCAATCCCGCTCGATTATGCTTTATTCCGCCCCCTACC GCCCAATAAGGAAGCTGTTGATGCCAACACTCTCCTGCATTACACTAATGTTTTTGATGCAATTGTTGATGCTGCTTATT TTGCAATGTCTGACTTGAACTTCACCAATATCCCTGTTCTGGTCACTGAATCAGGATGGCCCTCAAAAGGCGACTCATCT GAGCCGGATGCAACCATTGATAATGCTAACACTTACAACAGTAACTTGATCAGACATGTTCTTAACAATACAGGAACTCC GAAACACCCGGGAATTGCAGTTAGTACATACATTTATGAGCTTTACAATGAAGACTTGAGATCAGGTCCAGTCTCAGAAA AGAACTGGGGGCTATTTTTTGCTAATGGAGGACCAGTGTATACCTTACACTTAACTGGTGTTGGTACTATATTTGCAAAT GATACGACAAACCAAACATTTTGTATCTCAAAGCGTAATGCAGATCCTAAGATGCTGCAGGCAGCACTTGATTGGGCTTG TGGACCAGGGAAGGTTGATTGTTCCCCTTTGCTGCAGGGTCAACCATGTCATGAACCAGATAATGTAGTTGCGCATGCTA CATACGCTTTCAATGCTTATTATCAGAAGATGGCTAAGTCTCCTGGGACCTGCGATTTCAAAGGGGTTGCCGCTATCACT TCCACAGACCCAACACAATTTTGGTCTCTTCAATTTTAA
Protein sequence (LotjaGi4g1v0455300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSPTEIVTLLKAQSIQHVRLYDADRALLIALANTGIRVTVSVPNDQLLGIGQSNDTAANWVSRNVIAHVPATNITTIAV GSEVLTIIPNAAPILVSAMNFIHSALVAAKLDSQIKVSTPHPSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQTTGSCLM LNVYPYYDYQLSNDAIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPVLVTESGWPSKGDSS EPDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPVSEKNWGLFFANGGPVYTLHLTGVGTIFAN DTTNQTFCISKRNADPKMLQAALDWACGPGKVDCSPLLQGQPCHEPDNVVAHATYAFNAYYQKMAKSPGTCDFKGVAAIT STDPTQFWSLQF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 408 | 408 | 1.0E-254 | – | |
| PANTHER | 1 | 408 | 408 | 1.0E-254 | – | |
| Gene3D | 1 | 311 | 311 | 5.8E-113 | – | |
| Pfam | 2 | 310 | 309 | 1.4E-74 | ||
| SUPERFAMILY | 2 | 310 | 309 | 3.0E-79 | ||
| ProSitePatterns | 224 | 237 | 14 | - | ||
| SMART | 326 | 407 | 82 | 9.9E-40 | ||
| Pfam | 327 | 397 | 71 | 1.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0455300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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