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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0456300 |
| Transcript ID | LotjaGi4g1v0456300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | XAP5 circadian timekeeper; TAIR: AT2G21150.1 XAP5 family protein; Swiss-Prot: sp|Q8H110|XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER; TrEMBL-Plants: tr|G7LAJ6|G7LAJ6_MEDTR XAP5 circadian timekeeper; Found in the gene: LotjaGi4g1v0456300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82769519..82773151) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTAACAAAAAAGACAACAGTTGCTAACTGTGTGTTTTTTCTCTGTTTGAGACTTAACTCGAAGCAAGATGTCGGGTA TGGGAGACGGGTACGTCGGAACCGCCCAGGACGCGGTTCGGATCCGGCGGTTGGAGAAGCAGAGAGAGGCTGAGCGCCGC AAAATCCAAGAGCTCAAAACCAAGTCCGCCTCCTCCAATGGCCAACTCGGTCTCCTCCAATTCGGCTCCAGCACTTCCGA AGTACCCTTCCCTTCTCTTCCCTATTCATTCAATTCAATTCTAGGGTTCATCTTCTCCTTTCAATTTCCCAATCCCTAAC CACACTTTTCGTGTTTTAGATTCTGGAAACTGCCTTCAAGAAGGAAACTGTTGGTCTTGTCACCAGAGAGGAGTATGTTG AGAAGAGGGTTAATATTCAGAGCAAAATTGAGGAGGAAGAGAAGGAGAAGCTTCAGAAGCTGCAGCAAGAAGAGGAGGAG CTTCAACTGCAAAAACGCAAAAAGAGGAAGATTAAGGGGAATTCTAGATTGTCATTTGCTGAGGACATTGCCACTGATGC TCAAGAGGAGGAACAGAATCACAGTAATCACTACCCCTACTTACCCTTTCATATCATTGCTGTTTGAAATCATAGCTTTT CTTAGTTTTATCTGTAATGTATGATGTTTACATGTTGCAAAACTGTTTTATCAAAGAAGAGAATTGTTGTGAATGATCGT TAATCAATGATGTTACTAGTTATTCCATAAAAAAAAAAATGATGTTACTAGTTACTACTTACTGCAATGTTTGTTTGAAG ACATCAAACAAGATCGAACTTTGCTATGTTGCTGGCAGGTGATGTGGAAACAAATGGACTTCGGCGGGGTAAACTTGGCA AAGACCCTACTGTTGAAACTAGCTTTCTGCCTGACAGGTGCAGCATTTCTTCCCTTCTACTTTTGTGTCCTCGATACCAT GTCATTTCCTTGTTGGTTGTTTCTCTAACACACCTGCATAGGAGTGCTGAGGATATTATTCAGTGAGCGAGAGGCCGAGG AGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTCCGGGAGCAGGAGCAAATTCGAAGTGAGTGTTCTGCCTAACTC ATTTTTTTATATATACACAAAAAAAGGTATAACTTTTGTGTATATGATTATATTAGGGAACACATTTTTCTTATTTGCCT CTTAAGCTGACACTCAATAGCCACATTAATGGTCATTCTGAATCAAGTTGTTTCTCGAATTCAGATGAGCCTCTTGAAAT CACATACAGTTATTGGGATGGAACTGGCCACAGGCGTGTGGTACAGGCAAGTCAAGGCCATGCACTTCAACTTACATTTT GAGTTCCTAGATTAAAATGGATTTACTATATAATGTTATGTATTGGACTCTCAGCTATTTTATAATGATTCAGGTACGCA AGGGAGACAGCATAGGGGAGTTTCTCCGAGCAGTGCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACCTCT GTAGAAAATTTGGTTTACGTGAAAGAAGACCTTATCATCCCTCATGTATGAACACACCTATTATTTATAATTTCAGAAAG TCAAGCTATCTTAACATTTTAGTCATAAAAAAATATCTTTATTTACCCATTTCCATGTATTATTACAGCAACACAGCTTC TATGATCTAATTGTGAACAAAGCCAGAGGCAAAAGTGGACCGGTATGTCTCTTTAATTTCTCTTTCTTTTATTTATTGTG TTCCTTCTGTTTCAGAAGGTATGTCTCCTAAATTTCCTGAAATTGATATACCCCCTTGTATATATTGATATAGAAAACAT TTTAGATACTTTCCCCAATTAGTGTATTTGTGTTTTTTAGCTCCCCTAAGAAAAATTCTGTGGATAGTTTATAGAATTGA GAAAGATAATAATAGCCATTATTTTTATAATTTAATGCCAGGTCAATTTCTTTAAATTAGAATTCCCTTCACTTTATATA AGGGGAAAGTAAGGCATCAAGTGTTGAGATGCCTTACTTTCCCTTCTGATGTCAGGGGTCACTTTTGAGGAATCAAAACC CTTTATTTATGTACACAATCAGATTCACAACTTGTAGGGGCATGGGAAGGTCGTTATCAGGTATAGAAAGAAGTAGGAAA ATAAGCAAAAATGATTTAGTAAACAAGTTAACACTGACAAATCATATATAAGATGGTGAAAGGTCTGGCACAGAGCCGGG ATTTGCACTCCTAATGCTTTACATATATACTACTAATAAACTAACTTGGTTGTTATAATGAAACTTATTTCCCTTTTTAA GGTTAGGGATGTCAAGTAAGATAAAAAAAATGTTGAATGTTAATTCTTCTTTTCAGGTCATCTGTTATGAACTAATTCTT TGTGGTTTAGTTGGGAACATATCGCTGTTTGGATTAGTTGGATTTGCTCTTGTATGTGGTGAAATGTTTGGTACTTTTGA TTTCTTAAATCTTAATGTATGCAAATTGTTTCAAGAAGAAATTATTTTGATATTAAAACAACATTGAGGGAAAATATGAG TTTTTTTTGTTTTTCTTGTGATGACTTATGGTGTTTTCAGTAATCAGTAGTGCTTTCATGTTACTGATGGTGTTTACTTA GGTTGTTGGTCCAAAATTGCATTTCATCTTAAGTACCCTAACATTACTTTTTGTTCTATATATACAGCTTTTTCATTTTG ATGTGCATGAAGATGTACGGACAACTGCAGATGCCACAATAGAGAAGGATGAGGTACATTTTCTACCAAAAGCCTTCAGT GTTATTATTTTGAAATTTACGTTTATAAGATAGTGAGCATAAGACAAATGCATGTTTGTCTTCTGGGTTCTTGCTTAATT ATCTTACGCTCGTGTTCTCTGTCTCTACCAACAGTCTCATGCTGGTAAGGTTGTAGAAAGGCATTGGTATGAAGAGAACA AGCACATATTTCCTGCTTCAAGATGGGAGGTACTCTCACTATCTTTCCCTCTCCTTCCCTCCCTGACTCCCCGTCTTCTG TGTGTTTTAGTTTGAATGCTGGTCTTCATTCTGATTTTATGCCTCAAGGCTCAGCGTATTTGTGGATGAGGTGTTTGATA AATCTTTATTATGATAGTATCTGATGAACTGGCATATTTATGATAACAGTTTGCTCAGACTAGAGCGTTTTTTATGCATG ACAGCTTTATTACATAGATTCTGATTTTGATCCCTGTTGTGTTCATCCTCAATTGCAGATATATGATCCAGCGAGGAAAT GGGAGCGTTATACCATCCACGGGGATTAATTTTGAGGCTGTCAATTAAGTTGAATATGGATTCATTGCCCTGACCTTTAG TTTGATCATCAGCTAAACCTGATTATGCCTTGTGGACACCTTAATAATGTTGGCTTCTTATCATTAGTAATTTCAGTGGT TTTTGTTTCTATAGTTTGTTGTTGAAACTTGGACAATTAGTAAGATATATATTGAAGTGGAGTCTACCGTCTTTTTGAGA CACTGGAAGTTTTCAGGGGTATTAAAGCATGCAATTTTTCATTTCGATTGCCTTTTAGATGGATCATGTTTCTCTTCTTT ATATTGACAGAATTTGAACACAGCCTTTACGGG
CDS sequence (LotjaGi4g1v0456300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGGTATGGGAGACGGGTACGTCGGAACCGCCCAGGACGCGGTTCGGATCCGGCGGTTGGAGAAGCAGAGAGAGGC TGAGCGCCGCAAAATCCAAGAGCTCAAAACCAAGTCCGCCTCCTCCAATGGCCAACTCGGTCTCCTCCAATTCGGCTCCA GCACTTCCGAAATTCTGGAAACTGCCTTCAAGAAGGAAACTGTTGGTCTTGTCACCAGAGAGGAGTATGTTGAGAAGAGG GTTAATATTCAGAGCAAAATTGAGGAGGAAGAGAAGGAGAAGCTTCAGAAGCTGCAGCAAGAAGAGGAGGAGCTTCAACT GCAAAAACGCAAAAAGAGGAAGATTAAGGGGAATTCTAGATTGTCATTTGCTGAGGACATTGCCACTGATGCTCAAGAGG AGGAACAGAATCACAGTGATGTGGAAACAAATGGACTTCGGCGGGGTAAACTTGGCAAAGACCCTACTGTTGAAACTAGC TTTCTGCCTGACAGTGAGCGAGAGGCCGAGGAGCAAGCTGAGCGTGAAAGGCTGCGCAAACAGTGGCTCCGGGAGCAGGA GCAAATTCGAAATGAGCCTCTTGAAATCACATACAGTTATTGGGATGGAACTGGCCACAGGCGTGTGGTACAGGTACGCA AGGGAGACAGCATAGGGGAGTTTCTCCGAGCAGTGCAACAGCAACTTGCTCCTGAATTCCGAGAGATTCGAACAACCTCT GTAGAAAATTTGGTTTACGTGAAAGAAGACCTTATCATCCCTCATCAACACAGCTTCTATGATCTAATTGTGAACAAAGC CAGAGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAAGATGTACGGACAACTGCAGATGCCACAATAGAGAAGG ATGAGTCTCATGCTGGTAAGGTTGTAGAAAGGCATTGGTATGAAGAGAACAAGCACATATTTCCTGCTTCAAGATGGGAG ATATATGATCCAGCGAGGAAATGGGAGCGTTATACCATCCACGGGGATTAA
Protein sequence (LotjaGi4g1v0456300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASSNGQLGLLQFGSSTSEILETAFKKETVGLVTREEYVEKR VNIQSKIEEEEKEKLQKLQQEEEELQLQKRKKRKIKGNSRLSFAEDIATDAQEEEQNHSDVETNGLRRGKLGKDPTVETS FLPDSEREAEEQAERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVVQVRKGDSIGEFLRAVQQQLAPEFREIRTTS VENLVYVKEDLIIPHQHSFYDLIVNKARGKSGPLFHFDVHEDVRTTADATIEKDESHAGKVVERHWYEENKHIFPASRWE IYDPARKWERYTIHGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 336 | 333 | 5.9E-154 | – | |
| PANTHER | 4 | 336 | 333 | 5.9E-154 | ||
| Coils | 18 | 38 | 21 | - | – | |
| Coils | 73 | 118 | 46 | - | – | |
| Pfam | 89 | 332 | 244 | 4.4E-77 | ||
| MobiDBLite | 128 | 173 | 46 | - | – | |
| MobiDBLite | 131 | 173 | 43 | - | – | |
| Coils | 166 | 186 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0456300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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