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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0458300 |
| Transcript ID | LotjaGi4g1v0458300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein, putative; TAIR: AT5G07610.1 F-box family protein; Swiss-Prot: sp|Q9FLS0|FB253_ARATH F-box protein At5g07610; TrEMBL-Plants: tr|A0A1J7IEI8|A0A1J7IEI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0458300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82933870..82935326) extracted from Lotus japonicus Gifu genome v1.2.
TGTGGTTAACACAGAAGATATCTGGAGAAAAAAGAATGCGGAAAAAGTGTTCAACCGCCGCCGCTGAGGAGGTGGGCGGA ACCCTAGATCTATTATGGGAGATCCTTATCCTACTGCCATTGAAATCCCTGATACGATCAAAGTGCGTCTCGAGGCAGTG GCTGACACTTATTTCCGACCAACAATTTCGTGAGTCTCACCGCGACAAACACCAACGCTACAACACTTCCCTGATTTTCA ACCCCAAGGCTAGTGGACGTATAGAGATACCGCACATCCTCTGCTTTACCGCTACAACCCCAACCCCACCCCCAACCCCA ACCCGTTTCAATCTCAATTTTCTCCACCAATATGAACTCAACGTCGTTCGTTCCTGCAACGGTATAATCCTCTGCCATGG CTTAGATCCCTTCAATTATTTCATCTGCAACCCAATCACCAGAGAATTCACCTCTCTCAGTTTGCCATCCTGGTTCAAAA GCAAACCCCCACGCAACAGAACCCTTTTTCTTGCTTTTAACCCCTTCCAAATCATTTCAGTTGCTGCAGTGAATGCTTCC AAGCTTGACTGGGTTTTTAATGTATATTCCTTCAAATCTCGTTCCTGGATTCACTCTCAGTCTGAGATTTTACGCTCTAC CTCATCAGAACTTGATGATGTTGGTCATGGGGTTTACTGCAACCGTGCTATTCATTGGTGCAACAGAGGTTACTTCTTTA TATATTTTCATCTTGATACTAAGTGCCTACAAAATCTTCCAATTCCTCCGGCTTATTCAAAAAGGTATGATAGACGTCTC CATTATTTTGGAGAGTCTGGGGGTCGTTTGCATATGATGCTAAGTCCCAGGCTCGGCTTCAACTTCAATTATGATATTTA TGAGCTCAAGGAAGATTACTCTGAATGGACATGGAGGCATCATCTTGATCTTAATTCCCTGCGTAGCGAAATTGTTGTAG ACATAATTTGGTTCCGGTATCAGCTTCCGTTAGGCTTATACATTGTTCGCACAGCAAAAAACCACTTGTTGGTGTTGATT GCAGGTAAATATGGAGCCATGGTCTATGATCCTGTAGACGGAACTTCAAGAAAGCTGTGTGATTTTAGGTTTGGCTCGAC TTCATTGTTTTATACACAGAATAGCATTCAACAGGGTGAGGTTCTTCAGTATTTTGAAAATAATGAAAGGTTTGTTGAAT TAGCAAGGCTCACCAATCAGAACTGAAATGTATCGTTTATAACAGTTAGTTATGCAATCACTTCTCATGTTTTGAGATTA ATGTGTTAGTCCATGTTGTTGGCAGAAATTTGCTTGTTTTGTAGTATTTCTTATTTGACTTTCTTACTTCTTCATGTTGT TGATTCTTACTCACAATTCACTTTAAGGTTATTTGAATCAAACTGATCCAAAGAAATCAAAAAGCTAAATAGAAATGTAA ATAAATCTTCATTGAAA
CDS sequence (LotjaGi4g1v0458300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGAAAAAGTGTTCAACCGCCGCCGCTGAGGAGGTGGGCGGAACCCTAGATCTATTATGGGAGATCCTTATCCTACT GCCATTGAAATCCCTGATACGATCAAAGTGCGTCTCGAGGCAGTGGCTGACACTTATTTCCGACCAACAATTTCGTGAGT CTCACCGCGACAAACACCAACGCTACAACACTTCCCTGATTTTCAACCCCAAGGCTAGTGGACGTATAGAGATACCGCAC ATCCTCTGCTTTACCGCTACAACCCCAACCCCACCCCCAACCCCAACCCGTTTCAATCTCAATTTTCTCCACCAATATGA ACTCAACGTCGTTCGTTCCTGCAACGGTATAATCCTCTGCCATGGCTTAGATCCCTTCAATTATTTCATCTGCAACCCAA TCACCAGAGAATTCACCTCTCTCAGTTTGCCATCCTGGTTCAAAAGCAAACCCCCACGCAACAGAACCCTTTTTCTTGCT TTTAACCCCTTCCAAATCATTTCAGTTGCTGCAGTGAATGCTTCCAAGCTTGACTGGGTTTTTAATGTATATTCCTTCAA ATCTCGTTCCTGGATTCACTCTCAGTCTGAGATTTTACGCTCTACCTCATCAGAACTTGATGATGTTGGTCATGGGGTTT ACTGCAACCGTGCTATTCATTGGTGCAACAGAGGTTACTTCTTTATATATTTTCATCTTGATACTAAGTGCCTACAAAAT CTTCCAATTCCTCCGGCTTATTCAAAAAGGTATGATAGACGTCTCCATTATTTTGGAGAGTCTGGGGGTCGTTTGCATAT GATGCTAAGTCCCAGGCTCGGCTTCAACTTCAATTATGATATTTATGAGCTCAAGGAAGATTACTCTGAATGGACATGGA GGCATCATCTTGATCTTAATTCCCTGCGTAGCGAAATTGTTGTAGACATAATTTGGTTCCGGTATCAGCTTCCGTTAGGC TTATACATTGTTCGCACAGCAAAAAACCACTTGTTGGTGTTGATTGCAGGTAAATATGGAGCCATGGTCTATGATCCTGT AGACGGAACTTCAAGAAAGCTGTGTGATTTTAGGTTTGGCTCGACTTCATTGTTTTATACACAGAATAGCATTCAACAGG GTGAGGTTCTTCAGTATTTTGAAAATAATGAAAGGTTTGTTGAATTAGCAAGGCTCACCAATCAGAACTGA
Protein sequence (LotjaGi4g1v0458300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKKCSTAAAEEVGGTLDLLWEILILLPLKSLIRSKCVSRQWLTLISDQQFRESHRDKHQRYNTSLIFNPKASGRIEIPH ILCFTATTPTPPPTPTRFNLNFLHQYELNVVRSCNGIILCHGLDPFNYFICNPITREFTSLSLPSWFKSKPPRNRTLFLA FNPFQIISVAAVNASKLDWVFNVYSFKSRSWIHSQSEILRSTSSELDDVGHGVYCNRAIHWCNRGYFFIYFHLDTKCLQN LPIPPAYSKRYDRRLHYFGESGGRLHMMLSPRLGFNFNYDIYELKEDYSEWTWRHHLDLNSLRSEIVVDIIWFRYQLPLG LYIVRTAKNHLLVLIAGKYGAMVYDPVDGTSRKLCDFRFGSTSLFYTQNSIQQGEVLQYFENNERFVELARLTNQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 357 | 341 | 1.8E-43 | – | |
| Pfam | 18 | 51 | 34 | 2.4E-4 | ||
| SUPERFAMILY | 18 | 61 | 44 | 3.79E-7 | ||
| Coils | 392 | 396 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0458300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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