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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0461000 |
| Transcript ID | LotjaGi4g1v0461000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit delta; TAIR: AT3G18190.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9LV21|TCPD_ARATH T-complex protein 1 subunit delta; TrEMBL-Plants: tr|A0A072V1S9|A0A072V1S9_MEDTR T-complex protein 1 subunit delta; Found in the gene: LotjaGi4g1v0461000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83161617..83163215) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCAATTGCAGCTCCTCACCGATCCTCCAAGACGGAATCCTATGTCGACAACAAGCGCAAGGAAGACATCCGTCA TGCCAACATCGTCGCCGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATTT CCACCTCCTCCGACGAGGTTATCATCACCAACGACGGTGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCC AAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGCGACGGAACCACCACCGTCGTCGTTATCGCTGGCGC ACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCTA TTAAGGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGCGATTCACTCGTCAAATCCGCCAGC ACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCCCTCGCTGTCGACGCCGTCCTCACAGTCAT CGATCCCGCCCAGCCTGAAATGGTCGATCTCCGCGATGTTAAGATCGTGAAGAAGCTTGGGGGCACCGTGGACGATACCG AGCTCGTCAGGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATT GCCGTGATCCAGTTCCAGATTTCACCGCCGAAAACCGACATTGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGA TAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGA TTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTACCTTGCTAAAGCTAAGATATTGGTGATCAAG GATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACACTCAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGC CGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGG ACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTAGATGAAGCGGAGCGGAGTCTTCATGAT GCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTCATAGCCGGCGGTGGCGCACCTGAGATAGAGCTGTCCAG GCAACTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTTCGAGCATTTGCTGAGGCACTTGAAGTCA TTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGT GAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGT AAGCACGAGTGCTATCACCTTGGCCACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
CDS sequence (LotjaGi4g1v0461000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAATTGCAGCTCCTCACCGATCCTCCAAGACGGAATCCTATGTCGACAACAAGCGCAAGGAAGACATCCGTCA TGCCAACATCGTCGCCGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATTT CCACCTCCTCCGACGAGGTTATCATCACCAACGACGGTGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCC AAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGCGACGGAACCACCACCGTCGTCGTTATCGCTGGCGC ACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCTA TTAAGGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGCGATTCACTCGTCAAATCCGCCAGC ACCTCCCTCAACAGCAAGGTCGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATCCA GTTCCAGATTTCACCGCCGAAAACCGACATTGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGA AGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGC ATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTACCTTGCTAAAGCTAAGATATTGGTGATCAAGGATGTGGAAAG GGATGAGATTGAGTTCATTACCAAGACACTCAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTTGG GTTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGG ACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTAGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGT TGTTAGGTGCTTGGTTGCCAAGAGGTTTCTCATAGCCGGCGGTGGCGCACCTGAGATAGAGCTGTCCAGGCAACTGGGTG CCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTTCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACT CTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAATAC TGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAGTG CTATCACCTTGGCCACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
Protein sequence (LotjaGi4g1v0461000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAIAAPHRSSKTESYVDNKRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAA KMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVISDSLYKASIKAVDVLTAMAVPVELTDRDSLVKSAS TSLNSKVVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKS ILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGR TTTVLVRGSNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYT LAENAGLNPIAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 171 | 160 | 3.3E-240 | – | |
| PANTHER | 12 | 171 | 160 | 3.3E-240 | – | |
| Gene3D | 18 | 164 | 147 | 9.1E-35 | ||
| CDD | 18 | 474 | 457 | 0.0 | ||
| SUPERFAMILY | 19 | 473 | 455 | 2.09E-83 | ||
| Pfam | 36 | 171 | 136 | 2.0E-46 | ||
| PRINTS | 38 | 54 | 17 | 4.8E-19 | ||
| ProSitePatterns | 41 | 53 | 13 | - | ||
| PRINTS | 60 | 78 | 19 | 4.8E-19 | ||
| PRINTS | 90 | 109 | 20 | 4.8E-19 | ||
| ProSitePatterns | 90 | 98 | 9 | - | ||
| Gene3D | 165 | 315 | 151 | 1.0E-70 | ||
| SUPERFAMILY | 169 | 328 | 160 | 9.16E-42 | ||
| PANTHER | 171 | 473 | 303 | 3.3E-240 | – | |
| PANTHER | 171 | 473 | 303 | 3.3E-240 | – | |
| Pfam | 175 | 473 | 299 | 8.3E-88 | ||
| Gene3D | 316 | 475 | 160 | 5.4E-51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi4g1v0461000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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