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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0464100 |
| Transcript ID | LotjaGi4g1v0464100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wuschel-related homeobox-like protein; TAIR: AT3G18010.1 WUSCHEL related homeobox 1; Swiss-Prot: sp|Q6X7K0|WOX1_ARATH WUSCHEL-related homeobox 1; TrEMBL-Plants: tr|J7JYT7|J7JYT7_LOTJA NARROW ORGAN 1; Found in the gene: LotjaGi4g1v0464100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83416786..83420243) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGACAAAGGGAGCAGAGTGGGAGAGAGGGGCAGTTCGGATTGAGAATTAGTGTGAAAGGCACTGGACATGAAGGGAA CAATAAATGTAAACAAGGGTGATGAGCCTCATGATAACCCTCATCATCGTCACGTCGTTTTTCATTCACTACTCCCAATA ATCTCCCAGAATTCCACGCTTCATACCTCCTTCCTCCTCTTTGCTTTTCTTTCTTTCTTTCTTTTTTCCCTTTCTCTTCC TTCTTCACACACACAATCTCTCTCTCTCTTAGCCTCCTAGTAGTCAACCTCATCTCCTCTCCTCACTTTGTCCCATATTC AACCAACCAACACCATTCTCCCTCTTTCTCTATAGACAAATCATGTGTGTTTAGATACAAGTTGAAGTTGAGTTAATGTG AAAATACTTTCATCTCATAATATAGGAAAGTCTTATTTATATTTTGACTCGAAATAAGTGCTAACATTGGTTATCCCCAT ATCTTTCAATGTCTCGGACCCAAACACTTGATTCACCTCAACTAACTCACTTTGAATAATGAGCTACCTTCTTTTCTTAG CATCAATCCATGCCATATATAACCCTTGTCTACTTTTCAATTGAACTAGCTAGGGATTACCATTTTTTAGTCCATCCACC TTCACATCACACCCCTTGCAATTGCATGCCCTGCACTACACACTCATTTCTTTCCCTTTTTATTTTCTCAACTTCAGCCC CATTCTGGTAGTACTCCACCTATATTTCAATTCCCACTTTTGCTTTAATTCCATTCCCCTTCATTATTATACATGTTAAT TTCATCTGATTGTTTCTTTCTGAATACCATATATAGCTACTAGCTTCATCATTCTGCGATTAATTTCTAAGGCACAGAGT CACAAAAACCCTAGCTTTTTCTCTTTGATTATAAGTACTCATCAGCAGCAATGTGGATGGTGGGTTACAATGAAAGTGGT GCTGAATTCAACATGGCTGATTATCCATTCAATGGAAGAAAACTCAGGCCTCTCATGCCAAGGCCAGTGAGTACTTCTCC AAACAACACTAATTCAACTACAAACACCAGTCCTTGCTTAAGAACCATTCATCATGGAAATGATTTCTTTTCACAATATC AGAATCTGGGTATGCTTGTTTTTTTTCTTTCTCCCACCTCTTTAATATCACCATGTTATATTTCAGTCAGTGTGCTTGTG TTATACACTGTGTTTAATATGTTAAAAAAAGATTCATCTTTTAGCATCAGTGACAGAGCAGAACAAGAGAGAGTTCAACA CTCCACCCGTTGTGGTGAGCTCAAGGTGGAATCCTACACCAGAACAGCTAAGGGCACTGGAAGAATTGTACAGAAGAGGA ACAAGAACACCATCTGCAGAACAAATCCAGCAAATCACAGCACAGCTTAGAAGGTTTGGGAAAATTGAAGGGAAGAACGT TTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGGCAGAAGCGCCGCCGTCAAATGGAATCAGAAGCTGAGGGTCCGC CCCGTGACTTTGAAAGTTCTCATCATGACAAGAAAGACTTAGGTAACATAATTATCACCATAATTGTGTGTGTGTGTTGT GTGGCTTTTTTCTTTTCTTTTCTCTTCTCTTCTCTGTTGAGTTTTGTTTTTTAGAGATCTGTATTACATGCGTCTTTGCT TTTTCTTTTTTCTCATTCGGATTGTTGCATTGCTTGAGATGTAAAGTTATATTCTTTTTTGTTTTTCCTTTTGTCCACAG GCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACAACTGGCCATCCTCCACAAACTGCACTAGTACTCTTGCA GAGGTCTATTCTATATCTTATTGCTTTGTCTTTATCCTTCCTTCCTTCTTCATGGACCAATTGTGTTATCGTGACTGAAA GCACACTCATTTCAATTCATAAGAAGAGCTATGTTCACTTTTTGCTTTGAATTGTGTCAACACCAACAAGTATCCAAACA TATGCTGATTAACTAACCCTTTTGAGTTTCTCAGCTTGGGATTCACATTCACTCAATTATTAATAGCCAAAGTAAGTCTA GCTATAAGGAATAACACTAACTAGTTAAGCACTGATTATTTGCATATCATTGATGATCAAGTTGATGTTGGAAACAACAT CATAGAAAGATTATGTAGGTAGCTAGGGAAAGGACCCGAACAATAGAAAGAAAGAAAAGCTTAGTTTGTTGGGAAATGAA AAGGGTGTAAAAGCTGCATTCCTTCCTTTCTGTCGGGGCTGTTGTTATGAAACTTAGCTGGGCATGGCTTGGCTTTTGGG GCTTGTGCATATTCATGTCATTTAGGTCAGTAACTAGCTTTTGGTATGGCCACTCCATTGTACTACTATTCATTCATTCT ATTCTATGGAATTGAGGGTGATGGAAAAGACAAATCTCACCCTACTTTAATTTGACTTCTCAAGGCACCTTTATTTGAAA AATTAGAACTTGGAGTGCCCCATTTGAAATGTGTGCAGTCAAGTAGTATAGTACCTTTTTTTCACCTTTGGATTTTAGGT TTTTTCACCTCACTCACAACATGTTGATGAGTTTTTTTTTTCTTCTCAGGAATCTGTTTCAATTCAAAGTGCAGCAGCAA AAGCAGTGGTTGCTGCAGAGTGCAGCAGAACAGATGGATGGCTCCAATTCGATGAAGGGGAATTACAGCAGCAAAGAAGA AACTTTATGGAAAGGAATGCCACGTGGCGCATGATGCAGTTTCCTTGTCCTCCTCAACCTCCCCACTTCATTAACACACC TCCTCAATATGCCTCTACAACTAGCATGGCCACAGTAACAGCAGCTAGACTCATGGACCAAAAACTCATTAAGACTCATG CAGATCTCAGCTTCTTCATTTCACCTCACACCAGAGAAAACAACAGCATTATCCACTTAAGCAGTTTCACCACTGAGGAT AATGTTGAATCTCAAACCCTTCAACTTTTCCCCTTGCGGAATGGAGATGGTAGCAGTGAAAACAGCAATCAACATCACAA AGAGACAGAGATATCGGTTTCAGCAATGAATGCACCAAGCCAGTTTTTTGAGTTTCTACCATTGAAGAAGTACTGATTAG AAAGAAAAACTTGCTCTTAGATGTTGTAGTTTTATTGGAAAATAGCAATGCTTTTATTGTTATTGATGTTATGTTTCAAG AAATTGGTGGTGTAACAGGACACTGAGTTTGAATGAGGTATTTTACTTTAAAATGCATCTGGACTATGTTGGTTGGATCA TCAAGAAAGAGTATTTAAATCTCTATGTGGTTAGTGTTTATACTTCATAGGCCTTATTTAAGTAACTTGATGTTTATGTG TTGCATACATGCATGTGTTACTTCTCATATATATGAAAAAAAGAAACAGGAAAGGGAATGAGGGAAAGGGAAGGGGATTT ATATAAAGAATGTATAAG
CDS sequence (LotjaGi4g1v0464100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGATGGTGGGTTACAATGAAAGTGGTGCTGAATTCAACATGGCTGATTATCCATTCAATGGAAGAAAACTCAGGCC TCTCATGCCAAGGCCAGTGAGTACTTCTCCAAACAACACTAATTCAACTACAAACACCAGTCCTTGCTTAAGAACCATTC ATCATGGAAATGATTTCTTTTCACAATATCAGAATCTGGTGACAGAGCAGAACAAGAGAGAGTTCAACACTCCACCCGTT GTGGTGAGCTCAAGGTGGAATCCTACACCAGAACAGCTAAGGGCACTGGAAGAATTGTACAGAAGAGGAACAAGAACACC ATCTGCAGAACAAATCCAGCAAATCACAGCACAGCTTAGAAGGTTTGGGAAAATTGAAGGGAAGAACGTTTTCTATTGGT TTCAGAATCACAAAGCAAGAGAAAGGCAGAAGCGCCGCCGTCAAATGGAATCAGAAGCTGAGGGTCCGCCCCGTGACTTT GAAAGTTCTCATCATGACAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACAACTGGCC ATCCTCCACAAACTGCACTAGTACTCTTGCAGAGGAATCTGTTTCAATTCAAAGTGCAGCAGCAAAAGCAGTGGTTGCTG CAGAGTGCAGCAGAACAGATGGATGGCTCCAATTCGATGAAGGGGAATTACAGCAGCAAAGAAGAAACTTTATGGAAAGG AATGCCACGTGGCGCATGATGCAGTTTCCTTGTCCTCCTCAACCTCCCCACTTCATTAACACACCTCCTCAATATGCCTC TACAACTAGCATGGCCACAGTAACAGCAGCTAGACTCATGGACCAAAAACTCATTAAGACTCATGCAGATCTCAGCTTCT TCATTTCACCTCACACCAGAGAAAACAACAGCATTATCCACTTAAGCAGTTTCACCACTGAGGATAATGTTGAATCTCAA ACCCTTCAACTTTTCCCCTTGCGGAATGGAGATGGTAGCAGTGAAAACAGCAATCAACATCACAAAGAGACAGAGATATC GGTTTCAGCAATGAATGCACCAAGCCAGTTTTTTGAGTTTCTACCATTGAAGAAGTACTGA
Protein sequence (LotjaGi4g1v0464100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWMVGYNESGAEFNMADYPFNGRKLRPLMPRPVSTSPNNTNSTTNTSPCLRTIHHGNDFFSQYQNLVTEQNKREFNTPPV VVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESEAEGPPRDF ESSHHDKKDLGASRTVFEVEQTKNNWPSSTNCTSTLAEESVSIQSAAAKAVVAAECSRTDGWLQFDEGELQQQRRNFMER NATWRMMQFPCPPQPPHFINTPPQYASTTSMATVTAARLMDQKLIKTHADLSFFISPHTRENNSIIHLSSFTTEDNVESQ TLQLFPLRNGDGSSENSNQHHKETEISVSAMNAPSQFFEFLPLKKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 64 | 365 | 302 | 7.8E-85 | – | |
| PANTHER | 64 | 365 | 302 | 7.8E-85 | – | |
| SMART | 81 | 148 | 68 | 9.5E-5 | ||
| Gene3D | 83 | 146 | 64 | 5.4E-10 | – | |
| SUPERFAMILY | 84 | 149 | 66 | 1.63E-12 | ||
| Pfam | 84 | 143 | 60 | 1.2E-19 | ||
| CDD | 85 | 145 | 61 | 1.75515E-6 | ||
| ProSiteProfiles | 89 | 144 | 56 | 11.451 | ||
| MobiDBLite | 142 | 169 | 28 | - | – | |
| MobiDBLite | 145 | 169 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0464100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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