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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0465500 |
Transcript ID | LotjaGi4g1v0465500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | UV-B-induced protein, chloroplastic; TAIR: AT1G48450.1 alanine-tRNA ligase, putative (DUF760); Swiss-Prot: sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic; TrEMBL-Plants: tr|I3SR76|I3SR76_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0465500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83573563..83577513) extracted from Lotus japonicus Gifu genome v1.2.
CCCTCGTCTCCTCTCCACGCGTTCAAATATCTGGTCTAATTTTGAATTCAATTATTTGATTTTATAAGGTTGAAAAATAA AAGTGATTTTGGGGGGTGAGTGGTCATTTACTGACCTCACAGAGAAGTGGGCCTGATATGCATATAAAAACCTAACGTGG CAGCCCAAATTCACCGATTCAGTCAATTGGTTCGGTTCGGAACAACAATAGCAATAGCAATAGCAAAAGCAATAGCTAGG CTAGCTTTCTTGTCTGCCATCGGTGTTTTTTTGGTTGACTTGCATATCAATAATCAATATGGACGTGGCAGCGATTGCTG TCCGCTCACCGGCGACTCCATCGATCATCCTTCCAAGACCTAGTAACGCCGCTCGCCTTGTTTCTAATATTCGGTTCCCT CGTAAGGTATGAACAAATCGCTCACTCCAGTTATGATTGATTGATTGCTATTCAAATCATTTCTCTCCGCTGTTTATGAT TGATTGTTTTTGTTTGTTTGGCAGCTATGCACAACTTCTGTGTCTATCCCCAAACAAGGTCATATGAGTTTCTCTGTTGG AACTAGAAGAAGAGCCTTAGTTGTTAGAGCAGCAGCGTCGGACTCGGATGAATCCGCTAATAAGATTGCTCCTCTTCAGC TCGAGTCCCCGATTGGACAGTTCCTTTCTCAAATTTTGATCAATCACCCGCATCTCGTGCCTGCTGCGGTTGACCAACAG CTTCTACAGCTCCAAACTGACCGTGATTCTGAATCTGATCCCAATAAACAGAATCAAGATCCTTCTTCTTCCTCCACTGA TTTAGTTTTATACAGGTTGGTTTGTTGCATCTTTTCTCATTTCTCTCTAATTTCTAAATCTTATGCGCCCTGCCCTGCAA ATGCAATTTTGATTTTATTATCAAGTATAATAGAATTTGTTTGATTCATGTCAAGTATTTTTTATGTTTGAACTGGATAT GTCTAGTGTAGTGCTTTCACGGTATATGAGAATTTCACTTTTTATGGTTTAACCCGAGGTGATATGCCATTGCTGATTGC TGTCTCTTCTCATGTGAAAAACTGATTAAATCAATGAATATGACTTCAATTCTCAGCAATCAAATCTGTTTGCTTCAAGG ATATTAGCTGTGTGCCATTTCATGATGTGGATTTGACTGTGTTCAATTTCAATCCTGCTTAAAATACAAACTCAGTATGC ATGAATAGCTTAATGTGCTAGGGAGATGGTTTGTAACGCTGACTTCTTAATCTTCTTTCTCTTTCTGCTTTTTTCTAAAT CTGATAGTTTTATTGTCAAGCAAGTCAGTTGTTGACCATTGTGCTGGATTGCAAACTTTTTTAGGAGGATTGCTGAGGTG AAGGCTAATGAAAGGAGGAAAGCACTGGAAGAGATTTTGTATGCACTGGTGGTGCAAAAGTTCATGGCTGCTAACATTTC CCTCATACCCTCCATAACCCCAGACCCAACCGGTAGAGTTGATTCATGGCCAAATGATGATGAGAAGCTTAAGCAGCTTC ACTCATACGAAGCATATGAGATGATCCAAAACCACTTGTCTCTCATTCTGGGTAACAGAGCAGGAGATTTGACATCCATA GCTCAAATTAGCAAACTCAGGGTAGGGCAGGTCTATGCAGCATCAGTGATGTATGGTTACTTTCTTAAGCGAGTCGACCA AAGATTCCAGCTGGAAAAGACAATGAAAGTTCTTCCAAATGCAGCAGAAGACAGTAGTGTTCATAAACCTGTCAAGGACG ATGCAAGACCCGGTAATGGAGAGAACACTTCTCAAGTGATGTCTCATCCTGAATTATCTCCATGGCTTGGCGGTGATGTC AGTCCTGGTGGATTTGGTTCTGGTATAAAGCCGACTAGGTTGCGTAACTATGTGATGTCCTTTGATGGTGATACCCTACA GAGATATGCGACAATAAGATCCAAAGAGGCTGTGAGCATCATTGAGAAGCACACAGAGGCATTGTTTGGAAGACCTGAAT TTGCTATTACACCTGAGGGGGCAATCGATTCTTCAAAGGATGAAAACATCAAAATTAGCTTTGGTGGCTTAAAGAGACTT GTTCTAGAGGCTGTGACTTTTGGTTCTTTTCTCTGGGATGTTGAGAGCTACGTGGAATCGAGCTACCATTTTGTCTTAAA CTGAGCTGGGCTTTTGTTCCCGTACATCCCAATGCATGGTTTTAGACTTTTAGGGTGTTGGTACTGACTAAGCAAAATAA TTTAATGTAACTCGGTGTTAAAGGTCCTACTATTGTTCATTAATTGATGTGTATATACTATATAGTGATGTTGGCTCAAA TGCCTCCCGATTAAGTTATTGACTTAATGTATTTTTTGTTTACTGTAGTGCATTTTTTAAGTTTTTTTTTCCATACTGCA CTCTTCATAAGTTTATGTGCCTGAATACTTGCCAATTAAGTTAGTGACGGTAATTTTTTGTTTTATAGGTTTTTGGCATA AATTTTTCACTCGGCTCGAGCGCGTCCTTTTAAATTTATGGGTTAGAATCTTATTTTATATTCTCTCCGTTCTTATTTAA GTGTCATTTTAGAAGAAATTTTTTTTTTCATATTTAACTGTCATTTTGATGTTTTAAGGTTATAATTTGTCAATTATACC CTTACTTTTTTAATAGGCTTAATTGCACTTTTGGTCCTCCACGATTACAAAAGCCACGATTTTGGTCCCCAACAAAATTT TATTGCATGGAGCGTCCCCCACGTTATGCTCCGTTAGCAACTTTAGTCCGGACCCTCTATTCTGTTAGTTTTCAAACGTT TCTCTCTCCTAAAAAAGAATTAAATATTAAATATTAAAATTAAAACTCATAAAACATGAATACCATCCACACCTTCAACC TTCTTCAACTTTTCCAGAACCACCAACCCTTTCCTCACCCCCACCGGCCACCACCATCACACATGCCATACCACCACTGA ACTTGATCAATATCTGGGCAGAGATCACTTCTTCACCTTCAATTTTTCTCCTTCCATTTTCCTTCCTCTTGCACCCCCAA TTTCTAAAGAACCAATCATGAAAGCTTTACTGAAATTCCTATTCAGACATACCCATTGATCTTGATCCCGATCAATCTCG ATCTCGACCTCTCTCCCACAATCTCCTTGTTTCTCATTTTCATACCCATTGATCTTGTGCCCCTGCTGCTTCGGATTCTT CTTCTTTTATTCACCCACCATGCCCATGCTTCAGATTCTTTCTTCTTCCACAGCAAATACCTTTATCTCCATCTTCACCA CCAATGGACCCTTTGCTTCTGATATGATCAACAACCCAGGCCAGCACCACCACTCCCCTCGTCGATCCTTCTTCACGCAC ATTAATGGGCTTCTGACCAACACACGCATGCTTGCTTTGATGTCATCGCTATTCAGATCCAACGATTTAGCGAGGAGAAA AAGAGCTTCAGACGGAGACAAATCCAGGAAGAGAAAGCTTCGATTTGGAACAAAACCCAGGATCAAACCCCTTTGAACAA AGCTTCAACCTTTGAAGCGACAAAGCTCAGATCTGGTACTTGCATCTTTCGTTCTGGTGGCGCGGTGCGATTTGGGATGG GGCGTTGGAGTGGCTGTGATTGTGGAAGTTTTGAGTTGGTGCAGCATCTCGATTTGTGATTCTGGGTTTTGTAGGGAGAG GTGAAAATGGAAGAGGAGGAGAAGCGGAAGCAGAAGAAGGAGTAGAAGATGTCGTTTGAGATTTCATCTCAAGCATGGTC ATGGAGGTTCATACTTCAGAGGTTGGGGAAGAAGTTGATTTTCTGGGTTGGTGTGGGGGAGGGGTTTTTGGGTTGCTGGA TTGGTGTTGAGGGAGTGAATTTTCTAAATCATTGTATGTAATGCAATTCCATAGCAATCTTTATATACTTAAGCCTCTTC AATCAATTCATCTTCATATACTTAAGCCTCT
CDS sequence (LotjaGi4g1v0465500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGTGGCAGCGATTGCTGTCCGCTCACCGGCGACTCCATCGATCATCCTTCCAAGACCTAGTAACGCCGCTCGCCT TGTTTCTAATATTCGGTTCCCTCGTAAGCTATGCACAACTTCTGTGTCTATCCCCAAACAAGGTCATATGAGTTTCTCTG TTGGAACTAGAAGAAGAGCCTTAGTTGTTAGAGCAGCAGCGTCGGACTCGGATGAATCCGCTAATAAGATTGCTCCTCTT CAGCTCGAGTCCCCGATTGGACAGTTCCTTTCTCAAATTTTGATCAATCACCCGCATCTCGTGCCTGCTGCGGTTGACCA ACAGCTTCTACAGCTCCAAACTGACCGTGATTCTGAATCTGATCCCAATAAACAGAATCAAGATCCTTCTTCTTCCTCCA CTGATTTAGTTTTATACAGGAGGATTGCTGAGGTGAAGGCTAATGAAAGGAGGAAAGCACTGGAAGAGATTTTGTATGCA CTGGTGGTGCAAAAGTTCATGGCTGCTAACATTTCCCTCATACCCTCCATAACCCCAGACCCAACCGGTAGAGTTGATTC ATGGCCAAATGATGATGAGAAGCTTAAGCAGCTTCACTCATACGAAGCATATGAGATGATCCAAAACCACTTGTCTCTCA TTCTGGGTAACAGAGCAGGAGATTTGACATCCATAGCTCAAATTAGCAAACTCAGGGTAGGGCAGGTCTATGCAGCATCA GTGATGTATGGTTACTTTCTTAAGCGAGTCGACCAAAGATTCCAGCTGGAAAAGACAATGAAAGTTCTTCCAAATGCAGC AGAAGACAGTAGTGTTCATAAACCTGTCAAGGACGATGCAAGACCCGGTAATGGAGAGAACACTTCTCAAGTGATGTCTC ATCCTGAATTATCTCCATGGCTTGGCGGTGATGTCAGTCCTGGTGGATTTGGTTCTGGTATAAAGCCGACTAGGTTGCGT AACTATGTGATGTCCTTTGATGGTGATACCCTACAGAGATATGCGACAATAAGATCCAAAGAGGCTGTGAGCATCATTGA GAAGCACACAGAGGCATTGTTTGGAAGACCTGAATTTGCTATTACACCTGAGGGGGCAATCGATTCTTCAAAGGATGAAA ACATCAAAATTAGCTTTGGTGGCTTAAAGAGACTTGTTCTAGAGGCTGTGACTTTTGGTTCTTTTCTCTGGGATGTTGAG AGCTACGTGGAATCGAGCTACCATTTTGTCTTAAACTGA
Protein sequence (LotjaGi4g1v0465500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVAAIAVRSPATPSIILPRPSNAARLVSNIRFPRKLCTTSVSIPKQGHMSFSVGTRRRALVVRAAASDSDESANKIAPL QLESPIGQFLSQILINHPHLVPAAVDQQLLQLQTDRDSESDPNKQNQDPSSSSTDLVLYRRIAEVKANERRKALEEILYA LVVQKFMAANISLIPSITPDPTGRVDSWPNDDEKLKQLHSYEAYEMIQNHLSLILGNRAGDLTSIAQISKLRVGQVYAAS VMYGYFLKRVDQRFQLEKTMKVLPNAAEDSSVHKPVKDDARPGNGENTSQVMSHPELSPWLGGDVSPGGFGSGIKPTRLR NYVMSFDGDTLQRYATIRSKEAVSIIEKHTEALFGRPEFAITPEGAIDSSKDENIKISFGGLKRLVLEAVTFGSFLWDVE SYVESSYHFVLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 34 | 412 | 379 | 2.4E-201 | – | |
PANTHER | 34 | 412 | 379 | 2.4E-201 | ||
MobiDBLite | 114 | 134 | 21 | - | – | |
Pfam | 137 | 260 | 124 | 3.6E-23 | ||
MobiDBLite | 267 | 298 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0465500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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