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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0000400 |
| Transcript ID | LotjaGi5g1v0000400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein, putative; TAIR: AT1G76660.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|A0A072VQ62|A0A072VQ62_MEDTR Hydroxyproline-rich glycoprotein family protein, putative; Found in the gene: LotjaGi5g1v0000400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:106742..113196) extracted from Lotus japonicus Gifu genome v1.2.
GGTTAAAAGAAAAAAGAGGAAAAAAACATCGGCCATGTCCCGGTCTCTCCATCGCTTTTTCTCTGTCTTCAATCTTTTTC GCTTTTGTCTTTCTTTGTCCTTTGATTGTTAATAGTAATTAATTAATAATAATAATAATATTCTTCCTCTCTTCACATGA AAAGAGTCTACATGGTGTCAGCTTGTGAAGAAGAAATGTGAGAACGATCGATCTTAGCTGACAGTTCTAGTGCAAGTGCA GTGTAACAGCCAACCCAGCTAATATCGAATGGGGTCCGAGCAAAATCGATTTCCTCAGCATGAAAGAGTATTTCTCTCTC TCTCTCTCTCTCTCTCTCGATCTTTGCAAATTTCATTTCTAAATTACTCACCTACAATTGTGCTTTTTACATTATTTGCG AGTGATAGAAAAGGGTTTTTGGGGTTAGATCTGATCTGAGGTTCCTACTACTAAACCTCAGATCTCACATCAAACCACGA TAATTGCATTTAAAACCACTAACTGCCACCAATGCTTTTTCTGTTTCGCCTTCTGGTTTGCATCCATTAGTGTACATGAC ATTATGGACGCCAAACAATTTGATTTTCTTATTTTAGCACCACTTGTAGGAGGTGAGGTCATTTCATTTCATTTGATCTC ATTGTTCAATGAATTATTAGTTTCTAAAGCTGCTTCATTTTAAATTAGAGTCACCACCCATGTACTTTGCTTCAATTTTT AGTCACAGCATCGATCCTTAGTAGTCTTCTGAATATCAGGCTCCTTAGTAGTCTTCTGCAGTCAAAATAACAAATCAAAC CATACTGTTAATAACTGATCGAGAGTGAGTGAGTGTTTCTTTCTTTCCGGGTACTAATAGAAAGAAAATCTCATGTTTTA AAGTTTCTCAGATTTTCTGAGATTTATAATTTCATATACTTGTGCAAATTCACAAACAAAATCAGATTGAAAAACTGTGT TGCTTATTTTCTGTGTTACCTTGATTCTTGAACCACATATCCAAGATCATTCAACACTTAAGTAAGGGAAGAGTTTGGCA AGGGGAATTATAATATCAAAGAAGCAGCCATAATTCCCTGAGATAACTACCTACTAGTTCTTACATTGACAAGCAAGTTC TGTCATTTGGAGTAAGTTATTTATTGTTTTTTGTTAGAGAAATGTTATGGTACAAAACTTGTTTGCATGATGAGAATACG AGTATATATGGCATCATACAATATTTATCTATTCTCCATGTATTCTTACAATCAACAAGATTGGTAGTATGCTGGTAACT TTTTTTGTACAAAATGTTTTGTACCAAATAGTGCAGCTCTTTTGATTAATATTGGGTTTTCTCATCCAGTTTCTTACTAT TTCTTTTGATTAGCTTCCATAACTGGTCTAAATTTAAGAAAGGAAAGGATTTCTGGCGTTATGCAATCTAATACTGCTAT ATGATTTATTTGGCTTGAACAAACTGCTCATACAACAACAAAAGCCTTATCGCAACTCTCAAATGAAATCTTACCAATAG GTCATATTCTGAAGAATTATTCTCAGCCTGTTGGTCAGATTTCATTTGAGAGTTCTGACAAGATTGTTAATCTAGGCTCT TTAGTTGTTTACTGGTTGGTCAATAGTCTCTACAAGGGAGTCCCCTAATAAATATTTAAAGAGTTAAGAGGGCCTGGTTT TATTGAATTGTGCTTTTCTTCTCCTTCGAATCTTCTTTGCACCTTTTTTTTAGGAGGATACCTTATACTCTGCTGCTCTA ATATCTTTTTATCCTTCTCTCTATAAATAATACTGTATGATAAAGAACTGAACTTGTGACCTCATAGTCACATGGCATAA TGCCAACCATTGAACCAAGGCTCTCCTTCAAATTGAAGAGACTTAAATAAAATTCATATCAAATCATTATTATTATTATT ATTATTATTATTATTATTATTATTATTATTATTTATGATCATTATTATTATTGTTGTTGTTGTTATAGCATTTTTCCATC CAGGGTTCAGAAAAACTTCTTGTTCCATGTCGTGAGTTGTTTAGTTTTCCATTTCCTATCTTGAGCTTTTCACATTTTTG TTTCTATTACTTATACTTAACTGATTTAGTACACTTGTTGCTAATATATCTAGAAAACTGGTCAATTATTCTTCTCAATA AAAAAATTTGCTCCCTTCTGCTCCTCTACTGTGGCTCTTTTTGTTTGTTTGTTTAATAATGTAGATAAAAAAAATTAAAA GACTTCCCTTAGTTCTCCAAATCTAGTATTTCTATTTGATACTAAATCCAGCATGGTACTTAGATTGAATTATTGCAATA AAATAGCTTGATGCTTAGCATAGGATTGGTGGAACAAATAAGATTGTATTAGCTGATAAATAAAACTCAATTAAACAAAT ATCTCTTTGCCTCCAAAGATAGATTGGCAACAACAGTCATCAGCCTTGGGGGTAAACCTAAGTTCAGAAGCCAAATCTAG TTAAACATCAACTTAAGCCAAATCTAGATAATGGTCCTTGAGAATACAAAACACTACAGTAATTGACAGAAATCACACAA AACCAAAAATGAAGTCTTTCCTATTATTTAAGTGTTATTTAAAAAAATACCATTCTATTTATGTTGAAAGATCATTATAT TAAATATATTTGTGCAGTAAGAGTGTTCTAACCTTTCTTTATAGAGAGGCCTGCAACTTTCAGCTGTCTTTTTTGTTTTC TTCCAAATATTTGTGATCTCATTTCATCATTAATAAATATTTTAATTGCCAGATATTCAGTGATATTTATATTCTCAAGA TGAATGCATGATGGATTCCATATATCTCATATGCTCTCTTTTTCTTGTTGATAAAAGGTATAAATTAAAACTATTGGAGT ATTTGCAAGTAATAACCTTGTTATGTAGTTTAGCTCTAACAGTAGTTTAGTTATGACAGCTGTAAGGCAGAGTCTAACAG ATTCAGTTACCCTTAGCTTCTAAGAGAAGATTCTTGAATTTCTATAAAACCTGAGCTGTACTCAGATTCATTTGTAATCA AAGCACTCCTCTCTTTTTTCGTGCCAAAACCTTTCATAATGTATCATGAGAAATTACTCATAGATGAGAGGACACGCCCA ATGTTCCCCAAAAATTCCAAATAGATTATTCCACAAGAAGATGCTGCGTTACAATGATAAAAATGAATGCACTACATGAC AGCTTTAGGATAAAGTGCTGCATGAAGTCTAGGAATATTGAAGGTGGAACATGTCAATTGTGCTAATTCTACTAAGCAGA GTTTCCAAATGAAAGACCTAAACCTTGGGGGGAGTTTTACATTTACATATGTGTTTGTCTCAGAGAAACTGCTAGTGATT AGGAGAGTGGATTAAAAAGTGGGGTAAAATCATTTCTAAAAACAAATGAAAAATCAAATGGGTGTATATATATGAAGGTA AAAATTACTAGACTAGTAGCCAAAGTGACACTTGGTGAATACACTTTGCAATGTCTGGGATTTTAATTATCATCCCTTGA ACAGTTTCCATAAAAAAAAATGACCATAGATAAGAACTTAGACCCTATAACGTAAGTTTTGATTATTAAGTGTATGCTTT TATCTTGGCAAAATATTTAATGATATTTGTGTGGAATTTCTTGGGTTGAATTCTTGTTAAAAACTTAACATTTCATGGTG AATTGTTAAGTTGTATTTCCTTTACAGATCTACCTGTTATTGATCTCATTGTTCTTTTGAGTAAGTCTATATTGCTTGAC TTGCATTGACAGCGAAAGAGATGGGGAGGATGCTGGGGTGCATTTTCTTGTTTTGGGTCACAGAAAGGTGGGAAGCGCAT TGTACCTGCATCTCGCATTCCTGATAGTAATGGATCAGCTGCGCAGCCAAATGGGCCTCAAGCGGTTGGGTTAACCAATC AAACCACAGGACTGGCTCCTTCTCTTTTAGCTCCACCTTCTTCACCAGCATCCTTCACGCATTCTGCCCTTCCTTCAACT GCGCAGTCACCTAGTTGTTTCTTGTCATTATCTGCTAATTCGCCTGGTGGTCCTTCATCTACAATGTTTGCCACTGGACC ATATGCTCATGAAACCCAACTGGTGTCTCCTCCAGTCTTCTCAAATTTTACTACTGAGCCATCTACTGCTCCTCTCACTC CTCCGCCAGAGTTGGCTCACTTAACAACTCCATCTTCCCCAGATGTACCTTTTGCTCATTTTCTATCATCTTCAGCAGAT CTCAAAAACAGGGACAAGAACAATTACATCAATGCAAATGATCTTCAAGCGACATATTCACTCTACCCTGGAAGTCCTGC CAGTAGCCTTATATCTCCAATATCAAGGAACTCCGGTGACTGTTTGTCATCCTCTTTTCCTGAACGGGAGTTCCGCCCAC AGTGGAATTCATCTATACCTCTTGAGAATGGAAAATATCAGAGGACTGGGTCTGGGAGGGTTTCAGGTCATGACACAAAT AGTGTCACTATTGCATCCCAAGATACAAATTTCTTTTGCCCTGCTACCTATGCACAATTCTATCTAGACCAAAATCCTCC ATTCCCTCATAATGGTGGGAGACTAAGCGTTTCAAAAGATTCTGATGTTCAATCTACTGGTGGAAATGGACATCAGAGCA GGCATGCTAGAAGTCCTAAGCAAGATGTGGAAGAAATAGAAGCTTACCGAGCATCATTTGGTTTCAGTGCAGATGAGATT ATATCTACCAGTCAATACGTAGAAATTTCTGATGTAATGGATGATTCATTTACCATGATGCCCTTCACCACTGGCAAATC AGCAATGGAAGAAAGCATAGAGCCTTCGTTGATGAAAGGATTCAAAGCTCATGAGACACATGTGGCAATGCAGAATCTGA AAAGCCTTAGATTAGATCCGGGTCCTGTTGGTAAGGAAGCACGCAGTCCTGTCCCTATATGTCATGGATATGAAGGTATG CTATAAATACTTGATCTGAATATGATTTGTTTTTGTTACATCTTGAGGAATCATGGAAATAGAAAAAGAAAACAGACCAG AGCACTTCTAAATGAATTACTCCCTCCTGTCCTATTTATAAGGTCCTTTAAACAAAATCACACAAAATTAAGGAAAGAAG TTAAAATGAGTTCACATATTTGTTTTGAAAAAGTTATTGCAACATTTCAAGTTTATCCCTGCTTGAAGTCAAACTCTACT GTCATGTATTGTCACTTCGAAGTCATCAAACCCTTAAATTAAATTTCACCATTGAAAACTCCTAACACCACCAAAGGTTT GATTGGACAGTGTGGAAGAATGTATTATTTCTCCTTCCTTTCCTTATTAATCAAAACCTGAGAATTGAAAAGGTTCAATA GTCATGGTGTGTTGTACTTTATAGATTAAAGATATAACAATTTTTTCTCTGGTAAGATATTGGTCCATCTTTGTATATTC TAGTGGTAAAGTATGAGATATGAATATCATAAAGTGCAGGGCAGTTTTGTGGAAAATGGTTATATTGTATGCATTTAAAC TGAGTTGGTTGTCTTATCTAATATCTTTGCTTCAACTTTTGACACTACTCGCTATCTACATCTAAGCACATACGTTTCTT TCTTGCACATGTCAGATAATAAATCGCCGGGGTATTGTAGCAACAGCTCTGGGTTAAGTACACCAGAGAACCACACTCTC TTGGATGATGAAGATATATTCTCAAAAATGGGGTCATCCAGAATCTGCCGGAAATATCAGATGGGATTATCATGTTCTGA CGCAGAGGTTGACTATAGGAGGGGAAGAAGCTTGCGAGAAGGAAAGGGCATATGATTTGGCATGACTGAGAATTAGTTGA TTAGTGCAGAACAGATTCTATGTGTATTAATTTGCTGCTTCCTTTTAAAAAACAACCCAAAAAAAAAGGAAAGAGGTTGT CTAATAGATGGAATGATCTAACCTTAGATCTAACCGATTCTGCCCCTCGTGTTTGATCTGATCTTACTGATGAATGAATG TAGGTTGTTGTTTTCTTCAAGTGATCCAGGTTAATGTTGAGTGAAGATTGATTCTAAGCAAAGGCTTGTTGACTTACGCA ATCTCTACTCTTTACAGTCCATGGATGCTCTGTAACTTTTGTTCTGACTGCAGGCAATTTACTTGCTATTATGTTTGGAA CCAACGCTTTCATGCTTCAACGGCAGAGTGGAATCAAAACTGGCAGAAAACCAATTACAAAATGGACCATTGCAACGCAA CTATCACCTGCGTCATAACACCGTCTTACAATGTCCGAATATTATGAACAATGCGAGATTAATCATCATAATGTTATTAT TGTGTTAGGTTTTATACTTTTGTACTAATGCATCAAAATTATATTCATATTAGCTTGTTTTTCTTTTGGACAAATATTAG CTTGTTTGAAATGCTTACAACATCAAACCATTACCATTGTTTCTGGGAAAAGTAC
CDS sequence (LotjaGi5g1v0000400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGCCACTGGACCATATGCTCATGAAACCCAACTGGTGTCTCCTCCAGTCTTCTCAAATTTTACTACTGAGCCATC TACTGCTCCTCTCACTCCTCCGCCAGAGTTGGCTCACTTAACAACTCCATCTTCCCCAGATGTACCTTTTGCTCATTTTC TATCATCTTCAGCAGATCTCAAAAACAGGGACAAGAACAATTACATCAATGCAAATGATCTTCAAGCGACATATTCACTC TACCCTGGAAGTCCTGCCAGTAGCCTTATATCTCCAATATCAAGGAACTCCGGTGACTGTTTGTCATCCTCTTTTCCTGA ACGGGAGTTCCGCCCACAGTGGAATTCATCTATACCTCTTGAGAATGGAAAATATCAGAGGACTGGGTCTGGGAGGGTTT CAGGTCATGACACAAATAGTGTCACTATTGCATCCCAAGATACAAATTTCTTTTGCCCTGCTACCTATGCACAATTCTAT CTAGACCAAAATCCTCCATTCCCTCATAATGGTGGGAGACTAAGCGTTTCAAAAGATTCTGATGTTCAATCTACTGGTGG AAATGGACATCAGAGCAGGCATGCTAGAAGTCCTAAGCAAGATGTGGAAGAAATAGAAGCTTACCGAGCATCATTTGGTT TCAGTGCAGATGAGATTATATCTACCAGTCAATACGTAGAAATTTCTGATGTAATGGATGATTCATTTACCATGATGCCC TTCACCACTGGCAAATCAGCAATGGAAGAAAGCATAGAGCCTTCGTTGATGAAAGGATTCAAAGCTCATGAGACACATGT GGCAATGCAGAATCTGAAAAGCCTTAGATTAGATCCGGGTCCTGTTGGTAAGGAAGCACGCAGTCCTGTCCCTATATGTC ATGGATATGAAGATAATAAATCGCCGGGGTATTGTAGCAACAGCTCTGGGTTAAGTACACCAGAGAACCACACTCTCTTG GATGATGAAGATATATTCTCAAAAATGGGGTCATCCAGAATCTGCCGGAAATATCAGATGGGATTATCATGTTCTGACGC AGAGGTTGACTATAGGAGGGGAAGAAGCTTGCGAGAAGGAAAGGGCATATGA
Protein sequence (LotjaGi5g1v0000400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFATGPYAHETQLVSPPVFSNFTTEPSTAPLTPPPELAHLTTPSSPDVPFAHFLSSSADLKNRDKNNYINANDLQATYSL YPGSPASSLISPISRNSGDCLSSSFPEREFRPQWNSSIPLENGKYQRTGSGRVSGHDTNSVTIASQDTNFFCPATYAQFY LDQNPPFPHNGGRLSVSKDSDVQSTGGNGHQSRHARSPKQDVEEIEAYRASFGFSADEIISTSQYVEISDVMDDSFTMMP FTTGKSAMEESIEPSLMKGFKAHETHVAMQNLKSLRLDPGPVGKEARSPVPICHGYEDNKSPGYCSNSSGLSTPENHTLL DDEDIFSKMGSSRICRKYQMGLSCSDAEVDYRRGRSLREGKGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 362 | 362 | 1.2E-156 | – | |
| PANTHER | 1 | 362 | 362 | 1.2E-156 | ||
| MobiDBLite | 115 | 134 | 20 | - | – | |
| MobiDBLite | 167 | 202 | 36 | - | – | |
| MobiDBLite | 176 | 193 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0000400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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