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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0001300 |
| Transcript ID | LotjaGi5g1v0001300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dehydrin; TAIR: AT1G20440.1 cold-regulated 47; Swiss-Prot: sp|P31168|COR47_ARATH Dehydrin COR47; TrEMBL-Plants: tr|I3T800|I3T800_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0001300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:205842..207131) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAATTAAACAATCATCATCATTCATCATAACCTCTCACACACACACTCATTCATATGTTACTACTTGTCATCCCATC TTCTTCTAGTTTAATTATTTGTGATTGATCATGGCTGAGGAGAACAAGAACGTCGTCGACACCCCCACCACCGATGAGAT TGAGATCAATGACCGTGGGGTTTTTGATTTTCTCGGAAAGAAAAAGGAACAAGATCATCAAAAACCTCAGGGGAAGGAGG AGGAGGAGGTGATCCTCACTGAGTTTGACAACGTCAAGGTTTCCAATGAGGAGGAGAAGAAGAACCACAGCCTGTTGGGC AAATTTCACCAATCCAACAGTAGTTCCAGCTCTGTAAGTTTCTTCTTTTCTACACACGCTACTCTGTTTTTAATTAACTG ATGGTCTGATCAGTACTTATAACTTAATCGATTGTACGTATTTGATTAAAAAATGCATTGAACGATGTTTACAGTCCATT GATGAAGAGGAGGAGGAGGTTGGAGAAGATGGAGAAAAAAAGAAGAAAAAGGAAAATAAGGGATTGAAGGAGAAGATTCA GGAAAAGATCGGAGGTGAGAAGAAGCATGACGACGTGGACACCTCGGTTCCTGTTGAGAAAGTGGAGGTTCATCATCCAG CTGTAGCAGTAACACACCATGAGGCTGAGTCGACGGAGGAAAAGAAAGGCTTCCTTGACAAAATTAAGGAGAAGCTGCCA GGTCAGCACAAGAAGACAGATCAACAGGGTGATCAGGTACCCCTATCATCATCATCATCAGGGGCAGGGCATGAAACTGA AACTGCTACTGAAGCTGAAGGAGAAGCCAAGGAGAATAAGAAGGGTCTTCTTGACAAGATCAAGGAAAAACTTCCTGGTT ATCACTCAAAGCCAACTGAAGACAAGGAAAAGGAAACCCCGGGTACTGCTCATTGACGATGATCAGATCACCAGTCTCTG TTTTGTTTTGTAAGGATCGGAGGATTTGTCTTGCTTTAATTTTGTTTGTTTGATTTTATCATGGCCTTAATTATGGTATT GTTGGTGTTTCTAGACATGTACTACTTCATGTATATGTATATATGGAGTGTACTGTCTATATTTATTTCCTTTCATTTTT AGCAAAAATGGAAATGAAAATATGTATTATTGAAAGCAAACACTACTACAGATTTGACCTTTTGCCACGCCCCAATTGTC ACGGTTGTAGGCGGAACCGTGACAAAAGGTCAATTATCACGGTTATAAACGGAACCGTGACAAAAGGAAATAATATTTTA TTATTATTTT
CDS sequence (LotjaGi5g1v0001300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGAGAACAAGAACGTCGTCGACACCCCCACCACCGATGAGATTGAGATCAATGACCGTGGGGTTTTTGATTT TCTCGGAAAGAAAAAGGAACAAGATCATCAAAAACCTCAGGGGAAGGAGGAGGAGGAGGTGATCCTCACTGAGTTTGACA ACGTCAAGGTTTCCAATGAGGAGGAGAAGAAGAACCACAGCCTGTTGGGCAAATTTCACCAATCCAACAGTAGTTCCAGC TCTTCCATTGATGAAGAGGAGGAGGAGGTTGGAGAAGATGGAGAAAAAAAGAAGAAAAAGGAAAATAAGGGATTGAAGGA GAAGATTCAGGAAAAGATCGGAGGTGAGAAGAAGCATGACGACGTGGACACCTCGGTTCCTGTTGAGAAAGTGGAGGTTC ATCATCCAGCTGTAGCAGTAACACACCATGAGGCTGAGTCGACGGAGGAAAAGAAAGGCTTCCTTGACAAAATTAAGGAG AAGCTGCCAGGTCAGCACAAGAAGACAGATCAACAGGGTGATCAGGTACCCCTATCATCATCATCATCAGGGGCAGGGCA TGAAACTGAAACTGCTACTGAAGCTGAAGGAGAAGCCAAGGAGAATAAGAAGGGTCTTCTTGACAAGATCAAGGAAAAAC TTCCTGGTTATCACTCAAAGCCAACTGAAGACAAGGAAAAGGAAACCCCGGGTACTGCTCATTGA
Protein sequence (LotjaGi5g1v0001300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEENKNVVDTPTTDEIEINDRGVFDFLGKKKEQDHQKPQGKEEEEVILTEFDNVKVSNEEEKKNHSLLGKFHQSNSSSS SSIDEEEEEVGEDGEKKKKKENKGLKEKIQEKIGGEKKHDDVDTSVPVEKVEVHHPAVAVTHHEAESTEEKKGFLDKIKE KLPGQHKKTDQQGDQVPLSSSSSGAGHETETATEAEGEAKENKKGLLDKIKEKLPGYHSKPTEDKEKETPGTAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 223 | 223 | 1.3E-56 | – | |
| MobiDBLite | 1 | 69 | 69 | - | – | |
| MobiDBLite | 1 | 234 | 234 | - | – | |
| PANTHER | 1 | 223 | 223 | 1.3E-56 | ||
| Pfam | 57 | 166 | 110 | 1.7E-16 | ||
| Coils | 83 | 103 | 21 | - | – | |
| MobiDBLite | 92 | 168 | 77 | - | – | |
| ProSitePatterns | 157 | 164 | 8 | - | ||
| MobiDBLite | 169 | 189 | 21 | - | – | |
| MobiDBLite | 191 | 234 | 44 | - | – | |
| ProSitePatterns | 209 | 216 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to water | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. |
Expression pattern of LotjaGi5g1v0001300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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