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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0002500 |
| Transcript ID | LotjaGi5g1v0002500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT1G76130.1 alpha-amylase-like 2; Swiss-Prot: sp|Q8LFG1|AMY2_ARATH Probable alpha-amylase 2; TrEMBL-Plants: tr|C6TCX9|C6TCX9_SOYBN Alpha-amylase; Found in the gene: LotjaGi5g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:689673..692792) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTGTGGTTATTATTATCATGTAGTACTAATTATAGAAAACCCAAATTATCCTTAATTTCACTTCTGTTTTGGCATTT TTGGCTTTATTTGTTCAAGTATTTGCTGTTTATTAATTGCAAAGATGTGAGTGCTGTGATGATCTTGTAAGACATATTTG ATTATCATACTCATTTTCTTAGTATATAAGGCTGCTATGAACTTTACATAGAATAGAATTAAAATTTTTTAAAAGAAAAA CCTTTGCAGGCATTCAACTGGGAGTCTCACAAGTACAATTGGTGGGCGAATTTAGAAAGCAAAATTCCTGACATAGCTAG AGCTGGATTTACTTCAGCATGGTTGCCGCCACCAACTCATTCCTTCTCACCTGAAGGTTAACACTTAACAGCTTTAGAGG GATTAGGCATAATAGTAAATATGATGATTTTTCTTGTCTTTCCCCTCTTTTTCAGGTTACACTCCACAGAACCTTTCCTC TCTTAATAGTAAATATGGTTCTGAGTATCAGTTAAAAGCTTTACTTCAAAAGATGAAGAACTGCAAAGTCAGAGCAATGG CTGACATTGTTATCAATCATCGTGTTGGTACCACCCAAGGTCGTGGAGGGATGTATAATCGCTTTGATGGAATTCCATTA GCGTGGGATGAACATGCTGTGACATCATCTACTGGTGGACTGGTAGCATATTCGTTACTCCGTCCATTTCTTTTTAACTG TCCAAAAAGAGAAAAAAAACACACATATTATGAATTCCAATCTCAATCTTACATTCATGATCCTGTTGCATCTATGCATT GTTTATTTCAGGGTAAGCCAGACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGA AAGGACATCATAGGATGGCTCCGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGTA ACACATGTTATGCCTTTTGAGTTTAATATATAAGGTTTTCCCTTGGTTTTTTTTCATTATGTACTCATGATTTGTTGATT TATAGTTTTATGCCTTTCAATTCTGTCCTGTTATAGGTTTTCACCAAAATATGTGAAAGAATACATCGAAGAAGCAAAGC CATTGTTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTACAAGGGTTCTGCTTTGGACTATAACCAAGGTTCAGTGCTT AAATATATTTTTTCATTCCTCAAATCAAATATAATATATAGTTAAAATCTGTAGCTTTTATAAACTGTTAGTAATTTGGA TAAAGGAATTTACAAATTACAACTAAACTAGCCTTTGGCTTACTTATTCACACTCTGCAGATAGCCATAGGCAGCGAATA ATCAATTGGATTGATGGCACTGGACAGCTTTCAACTGCATTCGACTTCACAACAAAGGGAATTCTTCAGGTACCCAACAT TCTGTGCCTAGTATGTTAAATGAACGTTTGAAAAAATGTACATGGAAGTTATTTTCTTCCCCTCTCTCTACCATTCAAAG AGTTAGCACTATCTGTAAAGTCGTCAAAATCTGATAACCTCAAGTGTATTGGCTATTGGATTCATTTAAAATCACATTTC TCACCACAGATCCCTTTTCTCCCATTGCACTTCTTTGTAGGAAGCTGTCAAGGGACAGTTTTGGCGTCTGCGTGATCCTC AAGGGAAGCCACCTGGTGTGGTCGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAATCATGACACCGGCTCAACT CAGGTACTACATTTACTATATGATAAAATGATACATGGGAATGAGATGCTTCTTGGACAATATTGGTAATAAGATCAGTT ACTATTCTTATTTCTAGAGCACGAAATGCATCCTGGGGAAAGGGTGTATAATCAGCCCAAATCTATGTGTGCATATCTAA TTTCTCTTTCTGGCAACCTGAAAAGAGAGGCTCATTTTTGGAGCAATGAATTTATGAAAACTAAGTATGCTTTTGAAACA TACAATTTGCAATGTAAATGGAAATATTCGAGAATAGAGGAGAGACTTAAAGATTATTGGTTAATCAGTCTTTTAATAAT TAAGTTCTATTGCTTTTGTAATTCTGCTGAGAATTCTTGCACCAATATGCAAATATGCCATTTTAACTATTAAATCTTGA GTTTACGCTCTTGTTTCACTCTCTGTGCAGGCTCATTGGCCCTTCCCCAAAGACCATATTATGGAGGTACTTCTTTTTCT GGCTATAATAATGTTCTCAAAATAATTCTTTCCAGTCAAATTTTCAAACTGGTTGATAGAAAATGTTTGAGCTGATAAAT AATCATGTAGCAACAAGAAAGAAAGGCTGTTCTTTTAACTTATATGAATGGAAAAGTATAGTCATGCATTATTTTGAAGA AGGTTTCCTGTGGTCTTTATTGTTACTTCCACTGTTGTTGTACTGCCATGAGACTAAAAGAAATGATCATCTTTTGTAAT TTTGAGAGTTTCTGGAATCCAAGAGGACGTGGGAAGGTCCTTGTGCTCTCTTCTCTCCCTAGCTGTTCTGGTCTAAGTTG TCGTGACTTGCGAGTTAGATACTTTCAGGAAATTCAAAAGTTGTTGAACTTTAGTTCCTAACCCCCAAAAATATTTACAC ATGCATTTTTAGTTAAATGGAGTTTGTTAATGTTTATACAATGTTTTGTCTACTACTAACTTTTGAATATTGCAGGGTTA TGCATACATATTGACTCATCCTGGGACACCAACGGTTTTCTATGACCACTTTTATGACTGGGGCAACTCATTTCGTAATG AGATTGTCAAGTTGGTTAGTAATAGAACTAGTACCATATACTGCATATTTGTATTTGCTTCTATTTTTTCAGAATTAGTT ATGAAATCTAGTAGCACGGACACTTAGATAATTTGAATTCCACTGCAGATTGACATTCGCAAGCGTCAAGGTATTCATAG TCGATCACCTATCAGGATTCTGGAGGCCAATGATAACCTATACTCTGCAATAATCGGGGAGAAAGTGTGTATGAAGATTG GAGATGGTTCATGGTGTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGGCTACAATTATGCTGTGTGGCAAAAGTAG
CDS sequence (LotjaGi5g1v0002500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACTGCAAAGTCAGAGCAATGGCTGACATTGTTATCAATCATCGTGTTGGTACCACCCAAGGTCGTGGAGGGAT GTATAATCGCTTTGATGGAATTCCATTAGCGTGGGATGAACATGCTGTGACATCATCTACTGGTGGACTGGGTAAGCCAG ACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGAAAGGACATCATAGGATGGCTC CGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGTTTTCACCAAAATATGTGAAAGA ATACATCGAAGAAGCAAAGCCATTGTTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTACAAGGGTTCTGCTTTGGACT ATAACCAAGATAGCCATAGGCAGCGAATAATCAATTGGATTGATGGCACTGGACAGCTTTCAACTGCATTCGACTTCACA ACAAAGGGAATTCTTCAGGAAGCTGTCAAGGGACAGTTTTGGCGTCTGCGTGATCCTCAAGGGAAGCCACCTGGTGTGGT CGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAATCATGACACCGGCTCAACTCAGGCTCATTGGCCCTTCCCCA AAGACCATATTATGGAGGGTTATGCATACATATTGACTCATCCTGGGACACCAACGGTTTTCTATGACCACTTTTATGAC TGGGGCAACTCATTTCGTAATGAGATTGTCAAGTTGATTGACATTCGCAAGCGTCAAGGTATTCATAGTCGATCACCTAT CAGGATTCTGGAGGCCAATGATAACCTATACTCTGCAATAATCGGGGAGAAAGTGTGTATGAAGATTGGAGATGGTTCAT GGTGTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGGCTACAATTATGCTGTGTGGCAAAAGTAG
Protein sequence (LotjaGi5g1v0002500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNCKVRAMADIVINHRVGTTQGRGGMYNRFDGIPLAWDEHAVTSSTGGLGKPDTGAIFQGFPNIDHTQDFVRKDIIGWL RWLRYNIGFQDFRFDFAKGFSPKYVKEYIEEAKPLFSVGEYWDSCNYKGSALDYNQDSHRQRIINWIDGTGQLSTAFDFT TKGILQEAVKGQFWRLRDPQGKPPGVVGWWPSRSVTFIDNHDTGSTQAHWPFPKDHIMEGYAYILTHPGTPTVFYDHFYD WGNSFRNEIVKLIDIRKRQGIHSRSPIRILEANDNLYSAIIGEKVCMKIGDGSWCPSGREWTLSTCGYNYAVWQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 314 | 314 | 1.1E-197 | – | |
| CDD | 1 | 267 | 267 | 5.67421E-131 | – | |
| SMART | 1 | 268 | 268 | 1.2E-4 | ||
| PANTHER | 1 | 314 | 314 | 1.1E-197 | – | |
| Gene3D | 1 | 260 | 260 | 2.8E-94 | – | |
| PRINTS | 5 | 16 | 12 | 6.7E-6 | ||
| SUPERFAMILY | 6 | 248 | 243 | 4.46E-44 | ||
| PRINTS | 89 | 100 | 12 | 6.7E-6 | ||
| PRINTS | 192 | 204 | 13 | 6.7E-6 | ||
| SMART | 257 | 315 | 59 | 6.8E-28 | ||
| Pfam | 258 | 314 | 57 | 4.9E-22 | ||
| SUPERFAMILY | 261 | 315 | 55 | 2.77E-15 | – | |
| Gene3D | 261 | 315 | 55 | 2.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Alpha-amylase activity | Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi5g1v0002500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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