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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0002500 |
| Transcript ID | LotjaGi5g1v0002500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT1G76130.1 alpha-amylase-like 2; Swiss-Prot: sp|Q8LFG1|AMY2_ARATH Probable alpha-amylase 2; TrEMBL-Plants: tr|C6TCX9|C6TCX9_SOYBN Alpha-amylase; Found in the gene: LotjaGi5g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:688964..693737) extracted from Lotus japonicus Gifu genome v1.2.
AGGGAACAAAAACAAAAGAGAAGTTGTTATCAGGAATCTGAACCGCGGTGAATCAAAGTAAACGGTATTGATTGGTAGCT TACTCTTCAAGCTTCTTTGTATTGTAGGAGAGAATAGAAGAAGGAACTAGAAGTTGAAATGCAGTAGCAACGTCTGGAAT TCCCACTCCACTCTCTATCACTCCGAATTTTGTGTCCCTCTCGACTCAAAAGCTGATTCCAATTCTCTATTACCTTGTTG ATTCCAAATCCGCAGATATTTGTGTTTTCTGCCTATTATTAATACTAATGCCTCACGCTCTTCCCTTCCCAACTCAATCT GCACTTCAGGTGCCTTTTCTCTCTAAATCACTATTCCTAATCTTTGACTTCACATAACATGGGCAACACCGCCAGCGTAT GCATCCAACAAATGCTCTTCATTCTTTCTGTTTTTATTTTAAATTTAGATTTATGTTCTTATTTGTTGGTTGTTATTGAT TGATTAGCAGGAAGAGCAACGCCAAACTGATCAAAAAACTCAAAGAACCCCCCCAAGTGATCAAACAACTCAAACAAATG ATCTCGGTATATATGCTTTTCACTCCTAACCAATTGAGAATTTTATGCTTCAATCACATCACTTTCCTCTGCTCACTGCT TACACTGAAAATGGACTTCGGTTACTAGTTTCATATTTTCACTCCTTACCTTATTCTAATCAAGGGCTTTGTAAAACCAT GAAAACTTGCCCGGCCGGTTACTCTATAAAACATATTTAGTAAGGTGGGCTAGCCTAGAATTAAGCTTAACTTGAGATCA TTGATGAATGCTTCTTCACGCAGGTACAGTCTTACGAGATGGAAAAGAAATACTTTTTCAGGTAAACTTTAGAGATTCTG GGCTTTGTTGCTTACTTATAATACAACAACTTTCAAGGCAAGCTTGTGCTATACTGATATTATCATTGTTGTGGTTATTA TTATCATGTAGTACTAATTATAGAAAACCCAAATTATCCTTAATTTCACTTCTGTTTTGGCATTTTTGGCTTTATTTGTT CAAGTATTTGCTGTTTATTAATTGCAAAGATGTGAGTGCTGTGATGATCTTGTAAGACATATTTGATTATCATACTCATT TTCTTAGTATATAAGGCTGCTATGAACTTTACATAGAATAGAATTAAAATTTTTTAAAAGAAAAACCTTTGCAGGCATTC AACTGGGAGTCTCACAAGTACAATTGGTGGGCGAATTTAGAAAGCAAAATTCCTGACATAGCTAGAGCTGGATTTACTTC AGCATGGTTGCCGCCACCAACTCATTCCTTCTCACCTGAAGGTTAACACTTAACAGCTTTAGAGGGATTAGGCATAATAG TAAATATGATGATTTTTCTTGTCTTTCCCCTCTTTTTCAGGTTACACTCCACAGAACCTTTCCTCTCTTAATAGTAAATA TGGTTCTGAGTATCAGTTAAAAGCTTTACTTCAAAAGATGAAGAACTGCAAAGTCAGAGCAATGGCTGACATTGTTATCA ATCATCGTGTTGGTACCACCCAAGGTCGTGGAGGGATGTATAATCGCTTTGATGGAATTCCATTAGCGTGGGATGAACAT GCTGTGACATCATCTACTGGTGGACTGGTAGCATATTCGTTACTCCGTCCATTTCTTTTTAACTGTCCAAAAAGAGAAAA AAAACACACATATTATGAATTCCAATCTCAATCTTACATTCATGATCCTGTTGCATCTATGCATTGTTTATTTCAGGGTA AGCCAGACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGAAAGGACATCATAGGA TGGCTCCGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGTAACACATGTTATGCCT TTTGAGTTTAATATATAAGGTTTTCCCTTGGTTTTTTTTCATTATGTACTCATGATTTGTTGATTTATAGTTTTATGCCT TTCAATTCTGTCCTGTTATAGGTTTTCACCAAAATATGTGAAAGAATACATCGAAGAAGCAAAGCCATTGTTCTCTGTTG GGGAGTACTGGGATTCTTGCAACTACAAGGGTTCTGCTTTGGACTATAACCAAGGTTCAGTGCTTAAATATATTTTTTCA TTCCTCAAATCAAATATAATATATAGTTAAAATCTGTAGCTTTTATAAACTGTTAGTAATTTGGATAAAGGAATTTACAA ATTACAACTAAACTAGCCTTTGGCTTACTTATTCACACTCTGCAGATAGCCATAGGCAGCGAATAATCAATTGGATTGAT GGCACTGGACAGCTTTCAACTGCATTCGACTTCACAACAAAGGGAATTCTTCAGGTACCCAACATTCTGTGCCTAGTATG TTAAATGAACGTTTGAAAAAATGTACATGGAAGTTATTTTCTTCCCCTCTCTCTACCATTCAAAGAGTTAGCACTATCTG TAAAGTCGTCAAAATCTGATAACCTCAAGTGTATTGGCTATTGGATTCATTTAAAATCACATTTCTCACCACAGATCCCT TTTCTCCCATTGCACTTCTTTGTAGGAAGCTGTCAAGGGACAGTTTTGGCGTCTGCGTGATCCTCAAGGGAAGCCACCTG GTGTGGTCGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAATCATGACACCGGCTCAACTCAGGTACTACATTTA CTATATGATAAAATGATACATGGGAATGAGATGCTTCTTGGACAATATTGGTAATAAGATCAGTTACTATTCTTATTTCT AGAGCACGAAATGCATCCTGGGGAAAGGGTGTATAATCAGCCCAAATCTATGTGTGCATATCTAATTTCTCTTTCTGGCA ACCTGAAAAGAGAGGCTCATTTTTGGAGCAATGAATTTATGAAAACTAAGTATGCTTTTGAAACATACAATTTGCAATGT AAATGGAAATATTCGAGAATAGAGGAGAGACTTAAAGATTATTGGTTAATCAGTCTTTTAATAATTAAGTTCTATTGCTT TTGTAATTCTGCTGAGAATTCTTGCACCAATATGCAAATATGCCATTTTAACTATTAAATCTTGAGTTTACGCTCTTGTT TCACTCTCTGTGCAGGCTCATTGGCCCTTCCCCAAAGACCATATTATGGAGGTACTTCTTTTTCTGGCTATAATAATGTT CTCAAAATAATTCTTTCCAGTCAAATTTTCAAACTGGTTGATAGAAAATGTTTGAGCTGATAAATAATCATGTAGCAACA AGAAAGAAAGGCTGTTCTTTTAACTTATATGAATGGAAAAGTATAGTCATGCATTATTTTGAAGAAGGTTTCCTGTGGTC TTTATTGTTACTTCCACTGTTGTTGTACTGCCATGAGACTAAAAGAAATGATCATCTTTTGTAATTTTGAGAGTTTCTGG AATCCAAGAGGACGTGGGAAGGTCCTTGTGCTCTCTTCTCTCCCTAGCTGTTCTGGTCTAAGTTGTCGTGACTTGCGAGT TAGATACTTTCAGGAAATTCAAAAGTTGTTGAACTTTAGTTCCTAACCCCCAAAAATATTTACACATGCATTTTTAGTTA AATGGAGTTTGTTAATGTTTATACAATGTTTTGTCTACTACTAACTTTTGAATATTGCAGGGTTATGCATACATATTGAC TCATCCTGGGACACCAACGGTTTTCTATGACCACTTTTATGACTGGGGCAACTCATTTCGTAATGAGATTGTCAAGTTGG TTAGTAATAGAACTAGTACCATATACTGCATATTTGTATTTGCTTCTATTTTTTCAGAATTAGTTATGAAATCTAGTAGC ACGGACACTTAGATAATTTGAATTCCACTGCAGATTGACATTCGCAAGCGTCAAGGTATTCATAGTCGATCACCTATCAG GATTCTGGAGGCCAATGATAACCTATACTCTGCAATAATCGGGGAGAAAGTGTGTATGAAGATTGGAGATGGTTCATGGT GTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGGCTACAATTATGCTGTGTGGCAAAAGTAGTTGCTCTTATAACTT GATTCTTCCTCTACTTGTGGACATGGAAATGAAGAGGAATCTTGTGCTTATGCGCTTAATACACGGTAAAACCTGATGTT CTGACTTCTGTCATGCAACCACTAGTAGGCTTTCAAAGTTGCTGTGTTAGTAACTTATGTGCTGCTCCTTAAAATTAAAA AGACGCTTTATGTATCTGTATTATGTACTATTAAATATTAATAGCTACTTTGTTTCTGTAATAGATATATTAATAAAAAC TGCTCTCTGCTAATGTAACTATATGTCTAGCCCTAAGTTATCCGTAATCCGGACTAGTATCCTCTCATATGAAATTTCTC TCATGTTCCTTCATGTTGAAATTGTGTGTATCACACTCTTCATATGTATAAAATTCAAAATAAAACTTGTCTGCACCGGA TTCTCTGTGTGAAACCCTGAGGTAGAGCATGCTTAGTAGAGGGGTTTGATTAATCCATGTAGAAGGGTGAAAGGTGGGAT TGAAGAAGGTGCTAGTGTTTGAGAAGATAGTGATCTGATCTGAAGAAGTACTTGTCAAGAATAAAATTGGTAAAGGCATG ATGTAGTCCTCATATACCCTTTGCCTACCCAATTTCTGTAATTTCATTTTGCTTTTCCTTTTCTAACTGTCATTAGCCTG AGAAGTTACTTGCCAAACTTTCTATTTTGTACCACCCCTTGTGCTACATTTGAA
CDS sequence (LotjaGi5g1v0002500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAACACCGCCAGCGAAGAGCAACGCCAAACTGATCAAAAAACTCAAAGAACCCCCCCAAGTGATCAAACAACTCA AACAAATGATCTCGGTACAGTCTTACGAGATGGAAAAGAAATACTTTTTCAGGCATTCAACTGGGAGTCTCACAAGTACA ATTGGTGGGCGAATTTAGAAAGCAAAATTCCTGACATAGCTAGAGCTGGATTTACTTCAGCATGGTTGCCGCCACCAACT CATTCCTTCTCACCTGAAGGTTACACTCCACAGAACCTTTCCTCTCTTAATAGTAAATATGGTTCTGAGTATCAGTTAAA AGCTTTACTTCAAAAGATGAAGAACTGCAAAGTCAGAGCAATGGCTGACATTGTTATCAATCATCGTGTTGGTACCACCC AAGGTCGTGGAGGGATGTATAATCGCTTTGATGGAATTCCATTAGCGTGGGATGAACATGCTGTGACATCATCTACTGGT GGACTGGGTAAGCCAGACACGGGGGCCATTTTCCAAGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGAAAGGA CATCATAGGATGGCTCCGATGGCTACGTTATAACATAGGCTTTCAGGATTTTCGTTTTGATTTTGCAAAAGGGTTTTCAC CAAAATATGTGAAAGAATACATCGAAGAAGCAAAGCCATTGTTCTCTGTTGGGGAGTACTGGGATTCTTGCAACTACAAG GGTTCTGCTTTGGACTATAACCAAGATAGCCATAGGCAGCGAATAATCAATTGGATTGATGGCACTGGACAGCTTTCAAC TGCATTCGACTTCACAACAAAGGGAATTCTTCAGGAAGCTGTCAAGGGACAGTTTTGGCGTCTGCGTGATCCTCAAGGGA AGCCACCTGGTGTGGTCGGGTGGTGGCCTTCAAGATCAGTCACATTTATAGATAATCATGACACCGGCTCAACTCAGGCT CATTGGCCCTTCCCCAAAGACCATATTATGGAGGGTTATGCATACATATTGACTCATCCTGGGACACCAACGGTTTTCTA TGACCACTTTTATGACTGGGGCAACTCATTTCGTAATGAGATTGTCAAGTTGATTGACATTCGCAAGCGTCAAGGTATTC ATAGTCGATCACCTATCAGGATTCTGGAGGCCAATGATAACCTATACTCTGCAATAATCGGGGAGAAAGTGTGTATGAAG ATTGGAGATGGTTCATGGTGTCCATCTGGGAGGGAGTGGACACTATCAACCTGTGGCTACAATTATGCTGTGTGGCAAAA GTAG
Protein sequence (LotjaGi5g1v0002500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTASEEQRQTDQKTQRTPPSDQTTQTNDLGTVLRDGKEILFQAFNWESHKYNWWANLESKIPDIARAGFTSAWLPPPT HSFSPEGYTPQNLSSLNSKYGSEYQLKALLQKMKNCKVRAMADIVINHRVGTTQGRGGMYNRFDGIPLAWDEHAVTSSTG GLGKPDTGAIFQGFPNIDHTQDFVRKDIIGWLRWLRYNIGFQDFRFDFAKGFSPKYVKEYIEEAKPLFSVGEYWDSCNYK GSALDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGQFWRLRDPQGKPPGVVGWWPSRSVTFIDNHDTGSTQA HWPFPKDHIMEGYAYILTHPGTPTVFYDHFYDWGNSFRNEIVKLIDIRKRQGIHSRSPIRILEANDNLYSAIIGEKVCMK IGDGSWCPSGREWTLSTCGYNYAVWQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| PIRSF | 16 | 427 | 412 | 4.9E-182 | ||
| PANTHER | 22 | 426 | 405 | 1.0E-239 | – | |
| PANTHER | 22 | 426 | 405 | 1.0E-239 | – | |
| Gene3D | 40 | 372 | 333 | 4.9E-123 | – | |
| SMART | 40 | 380 | 341 | 6.5E-28 | ||
| CDD | 41 | 379 | 339 | 3.03723E-171 | – | |
| SUPERFAMILY | 47 | 360 | 314 | 1.88E-63 | ||
| Pfam | 60 | 129 | 70 | 3.0E-8 | ||
| PRINTS | 117 | 128 | 12 | 1.4E-5 | ||
| PRINTS | 201 | 212 | 12 | 1.4E-5 | ||
| PRINTS | 304 | 316 | 13 | 1.4E-5 | ||
| SMART | 369 | 427 | 59 | 6.8E-28 | ||
| Pfam | 370 | 426 | 57 | 7.8E-22 | ||
| Gene3D | 373 | 427 | 55 | 3.6E-12 | ||
| SUPERFAMILY | 373 | 427 | 55 | 4.32E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Alpha-amylase activity | Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi5g1v0002500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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