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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0003100 |
Transcript ID | LotjaGi5g1v0003100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Complex 1 protein, LYR family protein; TAIR: AT1G76060.1 LYR family of Fe/S cluster biogenesis protein; Swiss-Prot: sp|C5D7M4|PGK_GEOSW Phosphoglycerate kinase; TrEMBL-Plants: tr|A0A078CAJ7|A0A078CAJ7_BRANA BnaC06g36720D protein; Found in the gene: LotjaGi5g1v0003100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:724213..728711) extracted from Lotus japonicus Gifu genome v1.2.
TAGGCCCAGTCTTTTTCGTTTTGTTTTTCAAACATGGAATAAAGAGTTGTCGTGACTCGTGAGCGAGCCTGAGAGAAGAA AGAGGAATGAGGGGGAAGGTAGAAAAATGGCGAAGCATTTGGAGTCAGATTGATGGAAAAGCAAGACAACAGGGTTGCCG ATTGTTACATGAGGGTCCAGACACCATGGAAGAGCTTCTAGATAGGCATCTCGTCAAGAAGAAGCAGCAGAAGGATGACT CTGACGACGACGAGTTGCTGAATCAACGGCGGCTCACCAGCACTCGCCGGGAAGCGCTGAGTCTCTATCGTGACGTTCTC CGGGCATCTCGCTTCTTCACGTGGCCCGATTCCAACGGCGTCCTCTGGCGCGACGTCCTCCGTGAGAGCGCGCGGAAAGA GTTCGAATCGGCCCGCTTCGAGACCGACCCGGAAGTGGTGACCCGTTTGCTAATCGGAGGCAACGAGGCGGTGCAATCCG CTGTCGATAAGCTCGTCGAGAAGCAGAAACAACAGACTCTGAAGGATCGTGGCGGTGCAGATCCTCATCAACGCTGATTT TACTAATCTTCCGTTTGAGGTAATGCTGTTGGTTATCCTTCAATTATGGTGGGTGTATTGTATTGCCTCAGATTGGGTGA GGATATAACAATGAGCAATGTGGTTTTATTTGCTTAGGTTTTGGATTTAGTTTATATCACAAGATTATAATTCTTAGATA TCAACTAGCAATTATGGTCTGCATCAGTCTCATGTTGAAGATCATGAGTAATGTAACCTTGACCTTATGCTTCATATGTG GTAGAAGAGACATTCAGAAAATCTAAGCAAACTATGATAGTGCAACTAATACCATAATAGAACAAACCATGACAACAAAA TATGATAGTGCAAGCTAGAATCATTCAGAGAAGACTGGATAATCAAGCAAAATACAGCAACAAACCTCATTTTCACATAG AACAAGCAACCAATCAACCATAGTACTGCACACTCAACCACGGATAAGCACCGGAACAGTGATGAGCTTCTACTAACAAA ACTAGCCTGAATGAGAAAGGAAGTAACTTTAATTGATCAATAAACCAGCAACTTGAGCTATGAGTCTATGACGGTGATGG GAAAACAAGCAGTTGGAGAAAAACTGATTACAATCCCATCCACTAAGAGAAGCTTAAATTACACTCCCCTCTTCCAAGAG ATGAATGTGCTTTACACTTTTGTCCATCTTGATGCAATCAAGTTTCTCTAGGACATTTATTTCTCTCTTGGTGATTCTAG GCATTATTGACAACTAGTTTTGATCCCTTGCAGTTAACTGTGGGACTTCAGAGTTCAGAAAATGGATTGCCGATTTTCAG TAAAGTTTCAAAGCTGGTAATAGGGTTGTTAAAAAAACTATATTTTATTTTCTGAAGTCTTAAAATTAATAGTTGTGTGT TTAATTTAAATGTAGTCATAACCATCTATTAAAATTATTACTCCTCATGATAATATGTACTTTGATATGCTGTCACCTAA TATGCTGTAAATATATCTTGGGAAGATGGACAAGCAGATTGACTAATTAATCACAGTAAAAGATGACTGAAGTAGTTTTT ACATCTTAGTTGATCAAGCTTATTTACTTGTATACTCTTATTGGCAAACTTAGGGAATGACCTGTTTTTCAGGCACAGAG GCAAAAATTTATAGTGGAATATCTGATCAAGTAAGCAGCAGCTGTCGCACTTGCCTAGTAGAGAATTTCTTCGCAAGTTA TGATAACTAATTTGCTGTGTATCCCAAAATTTTGTTATATGTAAAATAGGTTGTCTAGTACCGTAAACCATTCATGTTAA TGTATCTGAAATAACAGCTGGGAAGTTTCACATACTTCAACAGCAATAGTTGTAAAAGTCAATAAAAAGTTCCATCACTT CAATGTAATTCCGTGAAGGAACTTCAAGAACGTCTCATTTAATAGAAAATTAAATAACGTTATCTGTTTAAAGACAAACG GGCACTAAGTTTGTAGCTCTTAGACTAATTGATGATTTTGTTAATTTCTGTTATTTCAATTTCATGTTAAGCTCTTTGTT GGTTGAGATTTAGTTAGCTAGTGTTGATAGCTAGTTATTTAACTCTGTAAAAAGGTAGCTTCAATTGTAATTTTCATTTT CATTTCCCTTCATCAATGAGAATTCAGCTCACACTGAACTTTTCTCTCTACCACAGTTCAATAGTAGCTGAAGTATATCT TGGAATTTTAACTTTATTTATGCATCGGTATATCTTTTTAATTTATCACAACAGGTATACAAAGTTTTGCATTTCCAGTG CCCTGAAATTTTACAGAAGTACTCAAGTACACACGCTTGCCAACTCAAGAGAGAATAAAACAGCAAGAAAAATCCAGAAA CGGCTCTGTTTTCCTTTTCAATACATCACCATTATCGTGGTTTCTCTTTCTCATCATGATCAAGTGTCCCCTTTCTCATC ATAGCTACAAACTCCTGGTAATTAATCCTTCCATCCTGCAGATTGAAAGCGCCAAACCAAAGTCAGAATTCACATGGATG GAAGAACTATGAAATTATAACAGGAATACATATTGATAAGAAGCCAATACATCGTAAACTATTCAACATACATTGTCAGT GTCCACATCATCGATGACTTCATCTATAGCCGCTTCATCTCCCAGGTGATATTCAGTCAAAGCATGTCTAAGTTCATCTC TTGTTATATAACTGAAGAAATGTAGGCCAAACAGAACTTCAGGTAAGCAAGAACACAAGAAAACTCACAATTAAAAGAGA TGAAAACCTGATGTTGATTATGCAGTCAACATCTGAATAACTTGTCAATAAGTGATTCTGATTAATGCTATTGAACAGTT TTTACTTACCCGCTGTTATCCTTGTCAAAGTATTGAAAAGCCTTGAACAAATTCTCTTCCTTTTCAAGTTTATGCCGATT TATAGTGGCAGTAATAAATTCGTGATAGTCAATAGTTCCACTCTTGTCAACATCAGCCTAACCAAACATATGAGTAATCA AAAGCATTAGGTTACATTTCATTTATTCTTGCTTGATGAAGAGCAAGGGTAGAAACATTTATCATCTAAATCTTTATGAA ACTGAGCTTACAGCGTCCATTAGCTGTTTTATTTCAGATTCACTAAGCTTGGATCCCAGTTTGGACAATCCAGATTTTAG TTCTTCATATGTGATTGTGCCACTGCGATCAGTGTCCATGTTGTTGAACATTTGTTTCAACCCCTTGATTTCCTCCTCTG ACAGGTTTTCTGCTATTACCTTCCATATCAAAGATAAAAAAACTTGATCACTAGAAAAGATAGACAGTAGAAGTATATTT TATTTTCTAAACGTGCTCTCTTCATCATTGAAACTTGAAAGTCTTGAGGTACCTTTAAGGCAAGTTTCTTCATCTTGTTC ATTGCTCTGAACTGTTTCATCCTAATTAAAACAGCATTGTCTAGAGGCTTGTCAGATGCTTCACCACCTTCCTTCATCCA TGGATGTTCTGGTTCAAATGAACAAGGTGAAGTAAATGACATTCATAACTAAACTTGTTCTGTATACGGCACAGCTTCAT GCTAAGCATGGAATCTTGAAAACGCAATGACATACATACCAAGGGCTTCAGAAGCTGAAATGCGTTTCTTAGGGTCATAA GTCAACATTTTTCTGATCAAATCTTTTGCAACAGCTGAAATAGAAGGCCATGGTGCGCTCTCCAGATCAAGCTTAGCTTC CAAAATAGCTTCAAATATGCCTTTTTCGGTTTCTAAAATGGTTCGATAAATAATGTCAATAAACCAATAAAAATTCAAAC TTAACATCATGTATCTACTATGAAACAGAGTGATACGTTCTAAGATATTCTACTTACCAGCCCAAAATGGAGGCACCCCA CTGAGGAGGATGTATAAAATGATTCCTGCGCTCCACACATCTATCTCCTTTCCATAGTTCCGTTTTAACACCTCTGGAGC CACATAGTATGGACTTCCCACAATTTCTCTATACACTTTACCTGTATTTGTTATTTGATCATTATTCACCGTAATACTAT AAAATATGAATAGAGACACAAACACACAATCACAGACAAACAAAATATGTTTGTATCCTCTATCAACCTTAAATATCAGG TACCCATGCATGAATTGATGAGATATTTTGTTGGTCTCGATTCTATATTATAGTGACTGTCACTGTCAGCATTGCATTAT TGATATAAATTTCAGGTCATTTTTTGCTTAATCAGGGAGATTACCTATTTTATGCAATAGGAGAGGAAATTTTGATCAAT GGATTTATGTAAGTGTTTGGTTTCTGTTATTACTTATTATGGTGGTCCACTAAATTGTAGGTTTCAAATACCAGAAGTCA CTTAATTGACTTCATGTCCCTGCTTTTTTCTGTTGCTCTTTTTATAATGGAAGACTCGGTTGACTTGTCATTATCACATA AGAGATCGTTTACTTGCTT
CDS sequence (LotjaGi5g1v0003100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGGAAGGTAGAAAAATGGCGAAGCATTTGGAGTCAGATTGATGGAAAAGCAAGACAACAGGGTTGCCGATTGTT ACATGAGGGTCCAGACACCATGGAAGAGCTTCTAGATAGGCATCTCGTCAAGAAGAAGCAGCAGAAGGATGACTCTGACG ACGACGAGTTGCTGAATCAACGGCGGCTCACCAGCACTCGCCGGGAAGCGCTGAGTCTCTATCGTGACGTTCTCCGGGCA TCTCGCTTCTTCACGTGGCCCGATTCCAACGGCGTCCTCTGGCGCGACGTCCTCCGTGAGAGCGCGCGGAAAGAGTTCGA ATCGGCCCGCTTCGAGACCGACCCGGAAGTGGTGACCCGTTTGCTAATCGGAGGCAACGAGGCGGTGCAATCCGCTGTCG ATAAGCTCGTCGAGAAGCAGAAACAACAGACTCTGAAGGATCGTGGCGGTGCAGATCCTCATCAACGCTGA
Protein sequence (LotjaGi5g1v0003100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGKVEKWRSIWSQIDGKARQQGCRLLHEGPDTMEELLDRHLVKKKQQKDDSDDDELLNQRRLTSTRREALSLYRDVLRA SRFFTWPDSNGVLWRDVLRESARKEFESARFETDPEVVTRLLIGGNEAVQSAVDKLVEKQKQQTLKDRGGADPHQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 153 | 153 | 6.5E-69 | – | |
Pfam | 68 | 128 | 61 | 7.9E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0003100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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