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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0003300 |
| Transcript ID | LotjaGi5g1v0003300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA-binding protein Alba-like protein; TAIR: AT1G76010.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein; TrEMBL-Plants: tr|C6TE19|C6TE19_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0003300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:757106..758123) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGCTGAAACGCCAATCGATGAAAACGAGATCCGGATTACTAGTCAGGG GAGGATGCGCAACTACATTACTTACGCCATGACCTTGCTTCAGGTCATTTCTCCAATTTCTCTTAACCTTGCTTTTACAA CCACTGTACTTCACTTCTCGTGCTTTAATGTCTTTCTTTTCTTAATTAAGTATTAATTATTATTCTAATTCACTGGAACT CGGAATATGACTATCAACTTTTTTTGTTTTTCTTGTTGTGGTGTTTAATTAGTTATTTGGCTGTAATTGCTTTCATTTTT ATTTTGGAGGGAAATTGTGGGTTAGGTTCTATGGTGCGGTGCTGGCTTACCTTACCTTGTCTTATTTGTGCTTTTTATTT TACTGAAAAGCTGGGGTTGGAAGAAAGGTACTTATAAAAATATGCATATGATTAGTAATGGTTTCAACCATGTAGCTCTT TTCTTCCCTAACTCTAGGTTTTGTACGTTTGAAGGGGGTCGGGGTAGGGGGCTATTTTTTCAGTTCATCCATTTGCTCTT TCCTCCATGAAACACCCGAACAAGGAGAGGATTATGTCTTCTGTTTCATTCTTCCTATAGCTTTTGCTGCGTGTATTGGG AAAAAAATGAAGTCGTGGGAAGTCCTGAGCTGCAAAGTTTGAATCCTAAATGGAGTTATAGATTCTACATTTTCTCTGAT AGTCATTAATCTCAATTTCTGTTGCTTGCTTCCTTGCAGGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGGAG AGCTATCAACAAGACAGTGACAATTGTGGAGTTGATCAAGGTTCATTTGCTTTTCTCATTATATGTGCTGGACACGTTTT ATTGGAATTCTGTTTCATTCTGATGAGATTTTTGTTTTTTTGCAGAGGAGGATTGTGGGTCTCCACCAGAATACAGCAAT TGGATCCACTGACATCACTGATACATGGGAGCCACTTGAGGAAGGCCTCCTTCCGTAA
CDS sequence (LotjaGi5g1v0003300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGCTGAAACGCCAATCGATGAAAACGAGATCCGGATTACTAGTCAGGG GAGGATGCGCAACTACATTACTTACGCCATGACCTTGCTTCAGGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGG GGAGAGCTATCAACAAGACAGTGACAATTGTGGAGTTGATCAAGAGGAGGATTGTGGGTCTCCACCAGAATACAGCAATT GGATCCACTGACATCACTGATACATGGGAGCCACTTGAGGAAGGCCTCCTTCCGTAA
Protein sequence (LotjaGi5g1v0003300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRYQKVEKPRAETPIDENEIRITSQGRMRNYITYAMTLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTAI GSTDITDTWEPLEEGLLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 98 | 98 | 6.9E-69 | – | |
| PANTHER | 1 | 98 | 98 | 6.9E-69 | – | |
| Gene3D | 14 | 98 | 85 | 1.4E-28 | ||
| SUPERFAMILY | 16 | 93 | 78 | 7.33E-24 | ||
| Pfam | 19 | 83 | 65 | 7.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0003300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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