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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0005300 |
| Transcript ID | LotjaGi5g1v0005300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF668 family protein; TAIR: AT1G30755.1 elongation factor G, putative (DUF668); Swiss-Prot: sp|Q802R9|SMC5_TAKRU Structural maintenance of chromosomes protein 5; TrEMBL-Plants: tr|G7I7P5|G7I7P5_MEDTR DUF668 family protein; Found in the gene: LotjaGi5g1v0005300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1182436..1189272) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGAGTAAGTATAGTCAGAAAGAAACCAAACCAATTTCTCTCTTTCATACGTAGTCCAAGACAATGACAGATGGAAAA GAAGTATGAATTTCATCATGGTTCATGCCCACGAAGTTTCCTCCTCTTAATTTCAGTTCCATTCAACTTGCGCGTTTCTT ATTTTATTTCTCGTTTACTCTTAGCCAACAAAATCAATCATGTCCATGCGAATATCCTTCATGTATGTTCCTCTCATTCC TTTTCATTCAGTCAAACCTAATAATATTCTTCCCTCCTAATTAATTTCCCTGCTTCCTCACCTCTCTTTTCTTTTCCTTT CTTCCAATCCCTGCAACTCACTCATATTTTATCTGTTTAGGACTTGCAAACTCTCTATGTAAATACCGAAAGTAAGTACT GAATTCTTGATTGAATTGCAATGTTTGGTTCCATGATTTGCGTAGTGCACAGTCGTAGAAGCTAAGTGCATGTTTGGTTT CATGATTTGCACAAAATCTAAGGTATACTCAAAAGCTACTATCCGTAGCTTCTAACTAGAAAACATTCCGGACCCCAGGG TATTTTTCCGCGGAACCAAACATGTTACTAGGTAGCTTTTAACTAGAAGTGGTTCTAGAGCAATTCACCACGGAACCAAA TATGCTATATGTTTTTGTTTCTGACTTCTTATAATAACTTTGCTTTTTTGTTTCCCAAGTTATGGCTTAAAGTTGCATGT TCACTCCCCTGATGCCAATTTAAGTAGGAGCTGAATTTGTGAAGGCGTTGAGTTTTTCTTCAGCTCATTAATTTCCGTTA GGACAATAATGGGGTCGGTTTGCTCAGCTGGTAAGGCAGAGATAAATAAAAATGGAGGGAAGACCTTGGGGTGTGGGGGA AAGCTTGAGAAATTGAAGAGCTTTGTTAAGAAGAGCGGAGGTTGTTATTCAAATTCAAAGACTAGTGATCGTGGTAAAAT GGAGAAGAAGCGCAACTCTACATTTTCAGGTGAATTCAAGATATCCAATCCAAGTGAAATGGGGAGAAAACAGGTACCTT CATCCATCCTCTGGTAATTGTTGTATGTGGTGTTGTCTCTTGTGATTTTTTTGAAACTCTTCTATAATTGATTCTGAAGC CAGAATGGAGAAAAGCTTCTGAGTGCATGTGTAGCTTATAAGTCTCATAATTGACTCAGATGAACTAAAAGTGGCTGCTA TAATTTGGTTCCTCAAATGTAGATAAACAACACTTTTTCACAATATCCTAGCAAAGATATTTCAGTGTATAATAAAGGAT CAATAATGAGTCAATTGGAATCCTAGAAAAACTGCATTCATGCATTTCAATGTTGTATTCTCCAAGTGTTTTCTTAACCT CCCATTCCATTTTAGTATATACTAAGTGATGTGAGACTTGTTCCACAATTACCCAACATTACAAAGGACTAAAAGTTATT TGCACCCTCTCAACTAGTGTCAACTAGGTTAAAGACCTACATGTATGCCTGAAACAGTTAATGTTTTTCAGCATGACTTT TGATTTAACTAAACAGTAATCTGTCTATTTTCTTAAAATGATATAAACTATGATTTCCCTGCAACTGCAGTTTAGTTTTA CTCTAAAGTCTAAATCCCCAAATTATAAGCAGAATAAAATCAAATAGTTCCTTCTTTTTATTTGAGTTACATGAATGGCA TCTAAAATTTTAACATGGAGGGAATTTTGATGCTTCAAATTTTGATTTATGATGTCCTTCTTTTGGTAGGTCTCTCAAAG AAGCTCCTTTCTAGGGCGAGCTGGTGAGAGGGCAGTCGAAGTCCTGGACACACTTGGAAGTAGCATGCCTAAGTTAAACA CCAGCAATGGGTTTAGCTCTAGCATGGTGGCTCCTAGAGGGAATAAAATATCAATATTGGCATTTGAAGTAGCTAATACA ATAAGCAGGGGAGAAATTCTGTTTCAATCATTGTCTGAAGAAGACATTCAGTCCCTTGAAAAGGAAATTGAAGAATCAGA AGGGGTGCAAAACCTAGTATCTACTGATAAAAAGGAGTTAATCAGTTTTCTTGAGGCTGACAAAAGGTTCCAACTTGTTC ACACATCATAATAAGATTTTTGTTTTAGCTTCAAACTTCACTAAATGCATTTGTGGAAACTCTCTTCCACAATTGATTCT GAAGTCAGAATCAATTTTGGGTAGAAACTTCTATGAGTAGTTTTAGAGTTTCTGATTTGATTCTTATGAAATAGAAGTTG ATCCAAACATACTATAAATGAATATTTTGCATCCTATAATGTTCTTCACCTCTGAGCTTTGGTGTAATCTGCAGGAAAGA ATTCAATTCTTTCTCCCGTGAAGTAGCTAGATTTGGAAATTCATGTAAAGACCCTCAGTGGCATCACCTAGATCGATATT TCTCCAGGTGAGCTGGTTTGCTTGATTTTACATGCTGGTTTATGACAAGATTATGCTAACTCGTTACTCATCTTGGTAGA ATTCTTAAATAATTGCGAACATTTCAGATTATATTTTTCATCCCATAAACAATTTCAGGTTAGATTTAGATGTCTTGACC AACACACAACCTAGGGTAGAGGTAGAGAAGACAATGCAGGAGTTGACGGCTCTAGCTCACGATACTGCTGTAAGCAAATT GTGATTCTAAATAAAGTTTGCTTCCTACTTCTGATATTGTTAAAGTTTCTTCTTTGCTATTGAATTTTTTTTCATTCCTA CTTTAAATGAATATTGTACTTCTTCCTGTGTAAGGAATTATACCAAGAGTTGAGTGCTTTAGAACGTTTTGAACAAGATT ATCAACAGAAAGTTAAGGAAATGGAGTCTTTAAATCTTCCCCTCAATGGTTAGAAATCTCATAATATAGTATTCCTTACA AGATTTTCAACAAGATTATCACAAATTCAGTTTTCTTTATATATGCAGGGGAAAGCCTTACAGCTTTTCGGAGTGAGCTA AAGCATCAAAGAAAACTTGTGAGGAGCTTGAAAAAGAAATCCCTTTGGTCCAGAGATTTGGAGGAGGCATGTAATTTGCT TCTAATTCTAACAATTTCAACTTTATAGGAATGAATAGTCCCTTGTTTGTAACTATTCTTATTGAATGCATAATTTCCAT TTTTCTTGCTTCCCACCGCAAGTTTTACACAACAAGGAGCTTATTCCGTAGATTTACTCATTGCAGATAGTTGAAAAGCT AGTTGATATTGTTATCCATATACATCAAGCAATTTTGGAGTATCTTGGAAATTATGGTATGAGAGCATGGCTTGTATTGA TTCCAAAGGACTTTAGAACCATTGGAAATTATTCCTTTTACCCATAATAGTTTATTTTAATGTGCATAAATTAATTAATT GTTCACCTCTCTTTTTTTTTAATTCTTCAAATTAAGAGTCAGTGTACTATAACAGCAAGCTTTAAAAGAGAAGTGAAGAA ACTCAAATTAAATGCCAAAAGAGCCAATGATTTGAGATACTTCACTCTCATTTGAAACTTGATATTATAACTGGTTCCAA TAAAAAGAAAAAACAAGCCTAGCAATTAATTAATTATACTAAGGGAACTGTATCCTATATAACCTTGTTCTCCCTATTCT TTCATCATCATAGGCAATGTGGGAATTGGATGATGTTTCATTACAATCAACTCCAACACAGACTTACCTCAGGAAAATAG ATGTGTCTGGTTATTAATCTTCTAACATGATTTTATCAAATTGTGGATTCATAGCAGGTACAACCAGTATCCAGCATAGT GAGGGTTCTCAAAGGCTTGGTGTAGCTGGTCTTGCACTGCACTATGCTAATATTATCAATCAGATAAATATAATTGTAAG TTTGCATCATATGCTAACATAATAGCAATGACCTTAGCAATTAGTTTTCTTTTTCTGGTCTAAATAAAATGAAAATGTTC CTATATATCTTTTGTTTCAGGCATCTCGACCAAGTGTTCTTCCTCCAAACGTAAGGGACACATTGTATCATGGGTTGCCC ATTAGTATTAAAAATGTTCTTCCTTCACGGTTACAAAATGATGATTACACAAAAGAGGTGCACCCAATTACCTAATACGT AAAGTATAGATTTTTATTTCATGTTGGAAATATGCTCCTAACTTGAAATTTTGAACAGCTTTCCATTGCTCAGGTCAAAG CTGAAATGGATAAGATTCTCCAGTGGCTTACTCCATTTGCCACAAATACGACCAAGTAAGATAACAAAATAACACTAATT TAATTTCTCTTCCCTATGCACCTATGCTAGCCTTATTTATAGTTACTTGAAATTGCTTATTTATTTTTCTGAATTATATA TGTGGCAGAGCACATCAAGGTTTTGGATGGGTTGGAGAATGGGCAAATACAAGGTTGGTTGCTAGTTTTTTTTTTGAAAG ATCAAATTTATTGAAACTGAAGAAGCATGATACAATCAGATTGCTATAGCACCACTAGGAAGCTATTAGCAAAACCCAAC CCGGCAATACAAAAAGCCCTGTGCCTTAGCAAAACCAACAGACTGCCAATTTACAAGCGCAGTGCACCTAGGTGCCTTAT AGTAGTGAACCGTAAGAAGCAAGAGAGTTAATTTGGTCTTCTATCTTCCAGCAAAACCCAAAGGGGATCGAAACCTTCAC AACCTGTGTTTGCCAAGAAATCAGCAACCGAGTTTCCTTCTCTATATGTGTGCCTAATTTCAAGGACATTGATTTCCTTC ATCTGTTAATTTGGTATTACGATTTGCACATAACTCAATGTATGTTTGCATGCTAATATCCTCTTAATCAATAGTGGCAC GCTACTTGCAGAAACTTCTAATTGATTTTAATGGTACCATTATAGAAGGATTTCCAAATATACATTAAGAATTTTCACAT ATGATTTTGTGATTATATTAAAAATGAGTGAAAAGTGAAATTATTTATGTTTAGATATGAAAAAAGTGGTTTTTGAAGGT GGTGTTGTAAAATCCAGTTGTAAAATCTCAGAAACTGCTCTCTTTAGCGAGAAGAATTGATTTTGAAGCTGAAATTTATT CTCTAAAACAACTACTACAGGTATAATAATAATGTTAGCATGTGATGCAAAGTTAGTTGAGGTTTGTTTGTGGTTTTGCA GCAATGTGTTTGGCCAAAAGACCGCCAAAGAAAGTAACTTGATTCGCCTCCAGACACTTGAATACGCGGATAAGCAGAAG ATAGATTTTTACATCTTGGAATTGTTGGCTCGGCTTCACCATTTGGTTACCTTTGTGAGATACAGACATAACAATAATAA TAGTCATGTTGGCACAAAGACAATGCCTAAACGAATTACTTCTTCTCCAAAGGGACTTCATCTTCAGTCAAAGATGTTGC AGTTTATATCCTTGGACCGTGTCAGCACTCAACTTTCTGAAGAGGATAGGAGGTTGTTAGAGAAAGTAGCTAAGAGGAAA TGGACTCCAGGGGTTAGCAAAAGTGAGAATCTTGCAGGGATCAAGAAAACAGAAGCCACAGTTTGGCATTTCAGCAACAG TGTTGGGAGTTCACCCGTTAAGAGGCTTTTAGCTATGCAACCTCAAAGGTATGACGTTTTGGATGTCATGGATGGACTAT AATCGGCCAATTTGTATCTCCCAATATTGGACAATTCAAATTAAGGGCAGGTTTTGGTATAGCAACGATAATATATACAC ACCAAATAACTTAATGACTTCAATTTATAGGAACCAAAAGGTTATCTTACACAATATCATTCGATGTGAGACTGGGACTA ATATACACAAAAAGTTCAAGTTTTCTGACACAATAATATCATATGATGTGGGACTGAGTCGCAGACTCATTCATGTGTTC TTTCTCCTCAATTCCCTTATGCTCACCAATTCAATTTCTCACCTCTCTTTGCTTCGAAATGTAGACACATTCATTCCTTT CCATGTTTCTGTTTTCTGGTGGATTCTGTCTCATAGGCCACACATGGTAACAAGATATTCTGAATTGCAATGCAACAGAA AGAAATTAAGCTCCAATTACATTATCTCAAACGGGCTTAATGTGCTCAACCTTATGATTGGTTTCAGCATTTGCATATTT TCCGAAGTATGTTCAATCAGTATCCAAGTGCATGCTTTGTTTCAAATTTGTATTTGTTTAGAACACACACGTTTACTCGG AAGCTAAGTGTGATTCTAAAATATTCGAACATGGAACCAGACATGCAGTAAGACTCGTAACTTCTAACAAAAAATGATTC TAGACCAATCCATGGTGGAACCAAATATGTTACATGCTTTTGTAACATGTTATTGCTTTTAATTTCCTTAATTTGACCTT TTTTTTTTGTTTTTCCCAAGCTTAGTTATGACATAAAGTTGCAAATTCACCACCCTGATGCCCCACTTGAAGTAGCATCC GAATTTGTACAAGCGTTGTGTTTTTCTTGAGCTAATTAATTTCCGTTAGGACAATAATGGGGTCAGTTTGCTCAGCAGGT AAGGCAAAGAAAAACAAAAATGTAGAGGTAGTAAAGGGCTCCTTTGTAAACAAGAGTGGAGGCTTTGTAAACAACTTTCA ACAAAATAAATATAAATCGAACTATGAGATCAAAATGCAACCCATGAGGAGAACTTGAACAAAGGGGAAAGGCAGGAAAT CTTCGTAAATTATTGAAATGCAAGCTTGTACTTTATAGGAACCAACAAACTCTCTTACACAATACCATTCGATGTGGGAC TGAGACTTATATCATATACAAAGCTCAATTTCTCTGACACAATACTATCTATCATTCGATGTGCGGCTGTGCCTCAGGTG GGCTCTTTCTCATCCATTCCCTTCTCCTGACCACTTC
CDS sequence (LotjaGi5g1v0005300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCGGTTTGCTCAGCTGGTAAGGCAGAGATAAATAAAAATGGAGGGAAGACCTTGGGGTGTGGGGGAAAGCTTGA GAAATTGAAGAGCTTTGTTAAGAAGAGCGGAGGTTGTTATTCAAATTCAAAGACTAGTGATCGTGGTAAAATGGAGAAGA AGCGCAACTCTACATTTTCAGGTGAATTCAAGATATCCAATCCAAGTGAAATGGGGAGAAAACAGGTCTCTCAAAGAAGC TCCTTTCTAGGGCGAGCTGGTGAGAGGGCAGTCGAAGTCCTGGACACACTTGGAAGTAGCATGCCTAAGTTAAACACCAG CAATGGGTTTAGCTCTAGCATGGTGGCTCCTAGAGGGAATAAAATATCAATATTGGCATTTGAAGTAGCTAATACAATAA GCAGGGGAGAAATTCTGTTTCAATCATTGTCTGAAGAAGACATTCAGTCCCTTGAAAAGGAAATTGAAGAATCAGAAGGG GTGCAAAACCTAGTATCTACTGATAAAAAGGAGTTAATCAGTTTTCTTGAGGCTGACAAAAGGAAAGAATTCAATTCTTT CTCCCGTGAAGTAGCTAGATTTGGAAATTCATGTAAAGACCCTCAGTGGCATCACCTAGATCGATATTTCTCCAGGTTAG ATTTAGATGTCTTGACCAACACACAACCTAGGGTAGAGGTAGAGAAGACAATGCAGGAGTTGACGGCTCTAGCTCACGAT ACTGCTGAATTATACCAAGAGTTGAGTGCTTTAGAACGTTTTGAACAAGATTATCAACAGAAAGTTAAGGAAATGGAGTC TTTAAATCTTCCCCTCAATGGGGAAAGCCTTACAGCTTTTCGGAGTGAGCTAAAGCATCAAAGAAAACTTGTGAGGAGCT TGAAAAAGAAATCCCTTTGGTCCAGAGATTTGGAGGAGGCATATAGTTGA
Protein sequence (LotjaGi5g1v0005300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVCSAGKAEINKNGGKTLGCGGKLEKLKSFVKKSGGCYSNSKTSDRGKMEKKRNSTFSGEFKISNPSEMGRKQVSQRS SFLGRAGERAVEVLDTLGSSMPKLNTSNGFSSSMVAPRGNKISILAFEVANTISRGEILFQSLSEEDIQSLEKEIEESEG VQNLVSTDKKELISFLEADKRKEFNSFSREVARFGNSCKDPQWHHLDRYFSRLDLDVLTNTQPRVEVEKTMQELTALAHD TAELYQELSALERFEQDYQQKVKEMESLNLPLNGESLTAFRSELKHQRKLVRSLKKKSLWSRDLEEAYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 306 | 306 | 9.4E-153 | – | |
| PANTHER | 1 | 306 | 306 | 9.4E-153 | – | |
| MobiDBLite | 41 | 76 | 36 | - | – | |
| MobiDBLite | 60 | 76 | 17 | - | – | |
| Pfam | 124 | 180 | 57 | 3.3E-18 | ||
| Coils | 141 | 161 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0005300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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