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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0005300 |
| Transcript ID | LotjaGi5g1v0005300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF668 family protein; TAIR: AT1G30755.1 elongation factor G, putative (DUF668); Swiss-Prot: sp|A7Z4J5|RLMN_BACVZ Probable dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|G7I7P5|G7I7P5_MEDTR DUF668 family protein; Found in the gene: LotjaGi5g1v0005300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1183315..1189247) extracted from Lotus japonicus Gifu genome v1.2.
AACCAAACCAATTTCTCTCTTTCATACGTAGTCCAAGACAATGACAGATGGAAAAGAAGTATGAATTTCATCATGGTTCA TGCCCACGAAGTTTCCTCCTCTTAATTTCAGTTCCATTCAACTTGCGCGTTTCTTATTTTATTTCTCGTTTACTCTTAGC CAACAAAATCAATCATGTCCATGCGAATATCCTTCATGTATGTTCCTCTCATTCCTTTTCATTCAGTCAAACCTAATAAT ATTCTTCCCTCCTAATTAATTTCCCTGCTTCCTCACCTCTCTTTTCTTTTCCTTTCTTCCAATCCCTGCAACTCACTCAT ATTTTATCTGTTTAGGACTTGCAAACTCTCTATGTAAATACCGAAAGTAAGTACTGAATTCTTGATTGAATTGCAATGTT TGGTTCCATGATTTGCGTAGTGCACAGTCGTAGAAGCTAAGTGCATGTTTGGTTTCATGATTTGCACAAAATCTAAGGTA TACTCAAAAGCTACTATCCGTAGCTTCTAACTAGAAAACATTCCGGACCCCAGGGTATTTTTCCGCGGAACCAAACATGT TACTAGGTAGCTTTTAACTAGAAGTGGTTCTAGAGCAATTCACCACGGAACCAAATATGCTATATGTTTTTGTTTCTGAC TTCTTATAATAACTTTGCTTTTTTGTTTCCCAAGTTATGGCTTAAAGTTGCATGTTCACTCCCCTGATGCCAATTTAAGT AGGAGCTGAATTTGTGAAGGCGTTGAGTTTTTCTTCAGCTCATTAATTTCCGTTAGGACAATAATGGGGTCGGTTTGCTC AGCTGGTAAGGCAGAGATAAATAAAAATGGAGGGAAGACCTTGGGGTGTGGGGGAAAGCTTGAGAAATTGAAGAGCTTTG TTAAGAAGAGCGGAGGTTGTTATTCAAATTCAAAGACTAGTGATCGTGGTAAAATGGAGAAGAAGCGCAACTCTACATTT TCAGGTGAATTCAAGATATCCAATCCAAGTGAAATGGGGAGAAAACAGGTACCTTCATCCATCCTCTGGTAATTGTTGTA TGTGGTGTTGTCTCTTGTGATTTTTTTGAAACTCTTCTATAATTGATTCTGAAGCCAGAATGGAGAAAAGCTTCTGAGTG CATGTGTAGCTTATAAGTCTCATAATTGACTCAGATGAACTAAAAGTGGCTGCTATAATTTGGTTCCTCAAATGTAGATA AACAACACTTTTTCACAATATCCTAGCAAAGATATTTCAGTGTATAATAAAGGATCAATAATGAGTCAATTGGAATCCTA GAAAAACTGCATTCATGCATTTCAATGTTGTATTCTCCAAGTGTTTTCTTAACCTCCCATTCCATTTTAGTATATACTAA GTGATGTGAGACTTGTTCCACAATTACCCAACATTACAAAGGACTAAAAGTTATTTGCACCCTCTCAACTAGTGTCAACT AGGTTAAAGACCTACATGTATGCCTGAAACAGTTAATGTTTTTCAGCATGACTTTTGATTTAACTAAACAGTAATCTGTC TATTTTCTTAAAATGATATAAACTATGATTTCCCTGCAACTGCAGTTTAGTTTTACTCTAAAGTCTAAATCCCCAAATTA TAAGCAGAATAAAATCAAATAGTTCCTTCTTTTTATTTGAGTTACATGAATGGCATCTAAAATTTTAACATGGAGGGAAT TTTGATGCTTCAAATTTTGATTTATGATGTCCTTCTTTTGGTAGGTCTCTCAAAGAAGCTCCTTTCTAGGGCGAGCTGGT GAGAGGGCAGTCGAAGTCCTGGACACACTTGGAAGTAGCATGCCTAAGTTAAACACCAGCAATGGGTTTAGCTCTAGCAT GGTGGCTCCTAGAGGGAATAAAATATCAATATTGGCATTTGAAGTAGCTAATACAATAAGCAGGGGAGAAATTCTGTTTC AATCATTGTCTGAAGAAGACATTCAGTCCCTTGAAAAGGAAATTGAAGAATCAGAAGGGGTGCAAAACCTAGTATCTACT GATAAAAAGGAGTTAATCAGTTTTCTTGAGGCTGACAAAAGGTTCCAACTTGTTCACACATCATAATAAGATTTTTGTTT TAGCTTCAAACTTCACTAAATGCATTTGTGGAAACTCTCTTCCACAATTGATTCTGAAGTCAGAATCAATTTTGGGTAGA AACTTCTATGAGTAGTTTTAGAGTTTCTGATTTGATTCTTATGAAATAGAAGTTGATCCAAACATACTATAAATGAATAT TTTGCATCCTATAATGTTCTTCACCTCTGAGCTTTGGTGTAATCTGCAGGAAAGAATTCAATTCTTTCTCCCGTGAAGTA GCTAGATTTGGAAATTCATGTAAAGACCCTCAGTGGCATCACCTAGATCGATATTTCTCCAGGTGAGCTGGTTTGCTTGA TTTTACATGCTGGTTTATGACAAGATTATGCTAACTCGTTACTCATCTTGGTAGAATTCTTAAATAATTGCGAACATTTC AGATTATATTTTTCATCCCATAAACAATTTCAGGTTAGATTTAGATGTCTTGACCAACACACAACCTAGGGTAGAGGTAG AGAAGACAATGCAGGAGTTGACGGCTCTAGCTCACGATACTGCTGTAAGCAAATTGTGATTCTAAATAAAGTTTGCTTCC TACTTCTGATATTGTTAAAGTTTCTTCTTTGCTATTGAATTTTTTTTCATTCCTACTTTAAATGAATATTGTACTTCTTC CTGTGTAAGGAATTATACCAAGAGTTGAGTGCTTTAGAACGTTTTGAACAAGATTATCAACAGAAAGTTAAGGAAATGGA GTCTTTAAATCTTCCCCTCAATGGTTAGAAATCTCATAATATAGTATTCCTTACAAGATTTTCAACAAGATTATCACAAA TTCAGTTTTCTTTATATATGCAGGGGAAAGCCTTACAGCTTTTCGGAGTGAGCTAAAGCATCAAAGAAAACTTGTGAGGA GCTTGAAAAAGAAATCCCTTTGGTCCAGAGATTTGGAGGAGGCATGTAATTTGCTTCTAATTCTAACAATTTCAACTTTA TAGGAATGAATAGTCCCTTGTTTGTAACTATTCTTATTGAATGCATAATTTCCATTTTTCTTGCTTCCCACCGCAAGTTT TACACAACAAGGAGCTTATTCCGTAGATTTACTCATTGCAGATAGTTGAAAAGCTAGTTGATATTGTTATCCATATACAT CAAGCAATTTTGGAGTATCTTGGAAATTATGGTATGAGAGCATGGCTTGTATTGATTCCAAAGGACTTTAGAACCATTGG AAATTATTCCTTTTACCCATAATAGTTTATTTTAATGTGCATAAATTAATTAATTGTTCACCTCTCTTTTTTTTTAATTC TTCAAATTAAGAGTCAGTGTACTATAACAGCAAGCTTTAAAAGAGAAGTGAAGAAACTCAAATTAAATGCCAAAAGAGCC AATGATTTGAGATACTTCACTCTCATTTGAAACTTGATATTATAACTGGTTCCAATAAAAAGAAAAAACAAGCCTAGCAA TTAATTAATTATACTAAGGGAACTGTATCCTATATAACCTTGTTCTCCCTATTCTTTCATCATCATAGGCAATGTGGGAA TTGGATGATGTTTCATTACAATCAACTCCAACACAGACTTACCTCAGGAAAATAGATGTGTCTGGTTATTAATCTTCTAA CATGATTTTATCAAATTGTGGATTCATAGCAGGTACAACCAGTATCCAGCATAGTGAGGGTTCTCAAAGGCTTGGTGTAG CTGGTCTTGCACTGCACTATGCTAATATTATCAATCAGATAAATATAATTGTAAGTTTGCATCATATGCTAACATAATAG CAATGACCTTAGCAATTAGTTTTCTTTTTCTGGTCTAAATAAAATGAAAATGTTCCTATATATCTTTTGTTTCAGGCATC TCGACCAAGTGTTCTTCCTCCAAACGTAAGGGACACATTGTATCATGGGTTGCCCATTAGTATTAAAAATGTTCTTCCTT CACGGTTACAAAATGATGATTACACAAAAGAGGTGCACCCAATTACCTAATACGTAAAGTATAGATTTTTATTTCATGTT GGAAATATGCTCCTAACTTGAAATTTTGAACAGCTTTCCATTGCTCAGGTCAAAGCTGAAATGGATAAGATTCTCCAGTG GCTTACTCCATTTGCCACAAATACGACCAAGTAAGATAACAAAATAACACTAATTTAATTTCTCTTCCCTATGCACCTAT GCTAGCCTTATTTATAGTTACTTGAAATTGCTTATTTATTTTTCTGAATTATATATGTGGCAGAGCACATCAAGGTTTTG GATGGGTTGGAGAATGGGCAAATACAAGGTTGGTTGCTAGTTTTTTTTTTGAAAGATCAAATTTATTGAAACTGAAGAAG CATGATACAATCAGATTGCTATAGCACCACTAGGAAGCTATTAGCAAAACCCAACCCGGCAATACAAAAAGCCCTGTGCC TTAGCAAAACCAACAGACTGCCAATTTACAAGCGCAGTGCACCTAGGTGCCTTATAGTAGTGAACCGTAAGAAGCAAGAG AGTTAATTTGGTCTTCTATCTTCCAGCAAAACCCAAAGGGGATCGAAACCTTCACAACCTGTGTTTGCCAAGAAATCAGC AACCGAGTTTCCTTCTCTATATGTGTGCCTAATTTCAAGGACATTGATTTCCTTCATCTGTTAATTTGGTATTACGATTT GCACATAACTCAATGTATGTTTGCATGCTAATATCCTCTTAATCAATAGTGGCACGCTACTTGCAGAAACTTCTAATTGA TTTTAATGGTACCATTATAGAAGGATTTCCAAATATACATTAAGAATTTTCACATATGATTTTGTGATTATATTAAAAAT GAGTGAAAAGTGAAATTATTTATGTTTAGATATGAAAAAAGTGGTTTTTGAAGGTGGTGTTGTAAAATCCAGTTGTAAAA TCTCAGAAACTGCTCTCTTTAGCGAGAAGAATTGATTTTGAAGCTGAAATTTATTCTCTAAAACAACTACTACAGGTATA ATAATAATGTTAGCATGTGATGCAAAGTTAGTTGAGGTTTGTTTGTGGTTTTGCAGCAATGTGTTTGGCCAAAAGACCGC CAAAGAAAGTAACTTGATTCGCCTCCAGACACTTGAATACGCGGATAAGCAGAAGATAGATTTTTACATCTTGGAATTGT TGGCTCGGCTTCACCATTTGGTTACCTTTGTGAGATACAGACATAACAATAATAATAGTCATGTTGGCACAAAGACAATG CCTAAACGAATTACTTCTTCTCCAAAGGGACTTCATCTTCAGTCAAAGATGTTGCAGTTTATATCCTTGGACCGTGTCAG CACTCAACTTTCTGAAGAGGATAGGAGGTTGTTAGAGAAAGTAGCTAAGAGGAAATGGACTCCAGGGGTTAGCAAAAGTG AGAATCTTGCAGGGATCAAGAAAACAGAAGCCACAGTTTGGCATTTCAGCAACAGTGTTGGGAGTTCACCCGTTAAGAGG CTTTTAGCTATGCAACCTCAAAGGTATGACGTTTTGGATGTCATGGATGGACTATAATCGGCCAATTTGTATCTCCCAAT ATTGGACAATTCAAATTAAGGGCAGGTTTTGGTATAGCAACGATAATATATACACACCAAATAACTTAATGACTTCAATT TATAGGAACCAAAAGGTTATCTTACACAATATCATTCGATGTGAGACTGGGACTAATATACACAAAAAGTTCAAGTTTTC TGACACAATAATATCATATGATGTGGGACTGAGTCGCAGACTCATTCATGTGTTCTTTCTCCTCAATTCCCTTATGCTCA CCAATTCAATTTCTCACCTCTCTTTGCTTCGAAATGTAGACACATTCATTCCTTTCCATGTTTCTGTTTTCTGGTGGATT CTGTCTCATAGGC
CDS sequence (LotjaGi5g1v0005300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCGGTTTGCTCAGCTGGTAAGGCAGAGATAAATAAAAATGGAGGGAAGACCTTGGGGTGTGGGGGAAAGCTTGA GAAATTGAAGAGCTTTGTTAAGAAGAGCGGAGGTTGTTATTCAAATTCAAAGACTAGTGATCGTGGTAAAATGGAGAAGA AGCGCAACTCTACATTTTCAGGTGAATTCAAGATATCCAATCCAAGTGAAATGGGGAGAAAACAGGTCTCTCAAAGAAGC TCCTTTCTAGGGCGAGCTGGTGAGAGGGCAGTCGAAGTCCTGGACACACTTGGAAGTAGCATGCCTAAGTTAAACACCAG CAATGGGTTTAGCTCTAGCATGGTGGCTCCTAGAGGGAATAAAATATCAATATTGGCATTTGAAGTAGCTAATACAATAA GCAGGGGAGAAATTCTGTTTCAATCATTGTCTGAAGAAGACATTCAGTCCCTTGAAAAGGAAATTGAAGAATCAGAAGGG GTGCAAAACCTAGTATCTACTGATAAAAAGGAGTTAATCAGTTTTCTTGAGGCTGACAAAAGGAAAGAATTCAATTCTTT CTCCCGTGAAGTAGCTAGATTTGGAAATTCATGTAAAGACCCTCAGTGGCATCACCTAGATCGATATTTCTCCAGGTTAG ATTTAGATGTCTTGACCAACACACAACCTAGGGTAGAGGTAGAGAAGACAATGCAGGAGTTGACGGCTCTAGCTCACGAT ACTGCTGAATTATACCAAGAGTTGAGTGCTTTAGAACGTTTTGAACAAGATTATCAACAGAAAGTTAAGGAAATGGAGTC TTTAAATCTTCCCCTCAATGGGGAAAGCCTTACAGCTTTTCGGAGTGAGCTAAAGCATCAAAGAAAACTTGTGAGGAGCT TGAAAAAGAAATCCCTTTGGTCCAGAGATTTGGAGGAGATAGTTGAAAAGCTAGTTGATATTGTTATCCATATACATCAA GCAATTTTGGAGTATCTTGGAAATTATGGTACAACCAGTATCCAGCATAGTGAGGGTTCTCAAAGGCTTGGTGTAGCTGG TCTTGCACTGCACTATGCTAATATTATCAATCAGATAAATATAATTGCATCTCGACCAAGTGTTCTTCCTCCAAACGTAA GGGACACATTGTATCATGGGTTGCCCATTAGTATTAAAAATGTTCTTCCTTCACGGTTACAAAATGATGATTACACAAAA GAGCTTTCCATTGCTCAGGTCAAAGCTGAAATGGATAAGATTCTCCAGTGGCTTACTCCATTTGCCACAAATACGACCAA AGCACATCAAGGTTTTGGATGGGTTGGAGAATGGGCAAATACAAGCAATGTGTTTGGCCAAAAGACCGCCAAAGAAAGTA ACTTGATTCGCCTCCAGACACTTGAATACGCGGATAAGCAGAAGATAGATTTTTACATCTTGGAATTGTTGGCTCGGCTT CACCATTTGGTTACCTTTGTGAGATACAGACATAACAATAATAATAGTCATGTTGGCACAAAGACAATGCCTAAACGAAT TACTTCTTCTCCAAAGGGACTTCATCTTCAGTCAAAGATGTTGCAGTTTATATCCTTGGACCGTGTCAGCACTCAACTTT CTGAAGAGGATAGGAGGTTGTTAGAGAAAGTAGCTAAGAGGAAATGGACTCCAGGGGTTAGCAAAAGTGAGAATCTTGCA GGGATCAAGAAAACAGAAGCCACAGTTTGGCATTTCAGCAACAGTGTTGGGAGTTCACCCGTTAAGAGGCTTTTAGCTAT GCAACCTCAAAGGTATGACGTTTTGGATGTCATGGATGGACTATAA
Protein sequence (LotjaGi5g1v0005300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVCSAGKAEINKNGGKTLGCGGKLEKLKSFVKKSGGCYSNSKTSDRGKMEKKRNSTFSGEFKISNPSEMGRKQVSQRS SFLGRAGERAVEVLDTLGSSMPKLNTSNGFSSSMVAPRGNKISILAFEVANTISRGEILFQSLSEEDIQSLEKEIEESEG VQNLVSTDKKELISFLEADKRKEFNSFSREVARFGNSCKDPQWHHLDRYFSRLDLDVLTNTQPRVEVEKTMQELTALAHD TAELYQELSALERFEQDYQQKVKEMESLNLPLNGESLTAFRSELKHQRKLVRSLKKKSLWSRDLEEIVEKLVDIVIHIHQ AILEYLGNYGTTSIQHSEGSQRLGVAGLALHYANIINQINIIASRPSVLPPNVRDTLYHGLPISIKNVLPSRLQNDDYTK ELSIAQVKAEMDKILQWLTPFATNTTKAHQGFGWVGEWANTSNVFGQKTAKESNLIRLQTLEYADKQKIDFYILELLARL HHLVTFVRYRHNNNNSHVGTKTMPKRITSSPKGLHLQSKMLQFISLDRVSTQLSEEDRRLLEKVAKRKWTPGVSKSENLA GIKKTEATVWHFSNSVGSSPVKRLLAMQPQRYDVLDVMDGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 601 | 601 | 0.0 | – | |
| PANTHER | 1 | 601 | 601 | 0.0 | – | |
| MobiDBLite | 41 | 76 | 36 | - | – | |
| MobiDBLite | 60 | 76 | 17 | - | – | |
| Pfam | 124 | 179 | 56 | 8.5E-18 | ||
| Coils | 141 | 161 | 21 | - | – | |
| Pfam | 342 | 427 | 86 | 4.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0005300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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