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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0011100 |
| Transcript ID | LotjaGi5g1v0011100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dehydration responsive element binding transcription factor; TAIR: AT1G75490.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LQZ2|DRE2D_ARATH Dehydration-responsive element-binding protein 2D; TrEMBL-Plants: tr|A0A0R4J3F8|A0A0R4J3F8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0011100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2568840..2570345) extracted from Lotus japonicus Gifu genome v1.2.
CAGTGAGGCTCTTAGTTGACACGATCAGCCTGGTTCATCATGCCAAGTAGCAGCTCAACTCCACTAAGGGCCACGTTTCA GAAACTGGTGTGTTCAGTATTTACTCACATTCACTTGTTTTCCCTATAAAAACACCTTAAATCACTCACTCTTCATTCCT TCAATAATCAATAAGCCAAGCTGCTTATTTCTCTTTTAGGTAAAGAATAGAAGGAAAGAAAGAAGAAGAGTCCCCACCAC CAATGATGAAATCAGGCATGGGAATTGAAGAGAGAAAGCAGCTGAAGAGGCCAGCGCAGGCCAGTTCCAGAAAGGGTTGC ATGAGAGGGAAAGGAGGTCCTGAGAACGCGAGCTGCACCTACAAAGGCGTGAGACAGAGAACTTGGGGGAAGTGGGTTGC TGAAATCCGTGAGCCCAACCGCGGTGCTAGGCTCTGGCTTGGGACATTTGAGACCTCCCATGAAGCTGCCTTAGCTTATG ATGCAGCCGCGCGTAAGCTTTACGGCTCTGAAGCCAAGCTCAATCTCCCAGAGCTCTCTGTGCCCGCTGCAAATTCTCAT CATCAATCTGTACCTGACACCACCATCACCACCGCCCCCGCCAACAACCAGGTTGTTGTTCCTCAAATGCATCAACAACA ACCTCAAATTCATCAAAACTTTGATGATGCCGCTGTTACAAGTGTCCTCACATCTTCTGATTTCAGCAGCAACATGATGA TGAACAACCCTGCTATCTCCATGCCTTCTCATCATCATCATCAGCATGTTGTTGGTGATGGATCAATGTATAGCAGTGAC TCAGTGGTGCCTCTTCTTCCATTGGAGACCAACAACAACACTAATGCAGCAGCAATGGACACTACTGATGACATGTTCCG TTCGTTTTTCGGGACAGTGAACAACGAGACCATGCCACCCGTGTTTGATGATTCCATTTGGGCAGAAGCTGCCATGTCTC TTGATTTTCCTGTGGTTGCAGATGATGGAATTTACACAGCTTCTGGAAACTTCGGAGAAGTGGGTGTTTGGGATACGCTG CAAACACCATGGTGCATGTAAAAATCAAAATCAACATCAGCAACAAGATCAAGATCAAGTGAAACATAGGACATAATACA CCATAAAATAAATAACTTCCATCAGAGGGAGCATATATGTAGTGTGTATATAACTATGTTTGGCCTTAAGTACATATAAA AGTTAAGATTATAAGGGGTATATATTAGCATATATTAGAGTGTGCGTATATATTAATTATTTGTATAATAATTATATATG CTTGAGAGTTTCCACCTCATATAGACCATAGACCATGATATAGTGGTGATTTTACTATCCCGTTGTCGTGGTTTTTTTGG GTGTTATTGTAAATACTATATTATTAGGTTAAGGGAGGGTGATAGTAGAAAAATATGTAATGTGCCCCTAGTTACTTGTT TAGTTATGAATATCAGTTTGTGTTATGCATGTAAATAGCTTCTATATATTTTTATGTGTGTTATTA
CDS sequence (LotjaGi5g1v0011100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAATCAGGCATGGGAATTGAAGAGAGAAAGCAGCTGAAGAGGCCAGCGCAGGCCAGTTCCAGAAAGGGTTGCAT GAGAGGGAAAGGAGGTCCTGAGAACGCGAGCTGCACCTACAAAGGCGTGAGACAGAGAACTTGGGGGAAGTGGGTTGCTG AAATCCGTGAGCCCAACCGCGGTGCTAGGCTCTGGCTTGGGACATTTGAGACCTCCCATGAAGCTGCCTTAGCTTATGAT GCAGCCGCGCGTAAGCTTTACGGCTCTGAAGCCAAGCTCAATCTCCCAGAGCTCTCTGTGCCCGCTGCAAATTCTCATCA TCAATCTGTACCTGACACCACCATCACCACCGCCCCCGCCAACAACCAGGTTGTTGTTCCTCAAATGCATCAACAACAAC CTCAAATTCATCAAAACTTTGATGATGCCGCTGTTACAAGTGTCCTCACATCTTCTGATTTCAGCAGCAACATGATGATG AACAACCCTGCTATCTCCATGCCTTCTCATCATCATCATCAGCATGTTGTTGGTGATGGATCAATGTATAGCAGTGACTC AGTGGTGCCTCTTCTTCCATTGGAGACCAACAACAACACTAATGCAGCAGCAATGGACACTACTGATGACATGTTCCGTT CGTTTTTCGGGACAGTGAACAACGAGACCATGCCACCCGTGTTTGATGATTCCATTTGGGCAGAAGCTGCCATGTCTCTT GATTTTCCTGTGGTTGCAGATGATGGAATTTACACAGCTTCTGGAAACTTCGGAGAAGTGGGTGTTTGGGATACGCTGCA AACACCATGGTGCATGTAA
Protein sequence (LotjaGi5g1v0011100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKSGMGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYD AAARKLYGSEAKLNLPELSVPAANSHHQSVPDTTITTAPANNQVVVPQMHQQQPQIHQNFDDAAVTSVLTSSDFSSNMMM NNPAISMPSHHHHQHVVGDGSMYSSDSVVPLLPLETNNNTNAAAMDTTDDMFRSFFGTVNNETMPPVFDDSIWAEAAMSL DFPVVADDGIYTASGNFGEVGVWDTLQTPWCM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PANTHER | 3 | 248 | 246 | 1.1E-80 | – | |
| PANTHER | 3 | 248 | 246 | 1.1E-80 | – | |
| CDD | 38 | 98 | 61 | 1.33686E-22 | ||
| SUPERFAMILY | 39 | 96 | 58 | 8.5E-21 | ||
| Pfam | 39 | 88 | 50 | 2.8E-13 | ||
| SMART | 39 | 102 | 64 | 2.6E-36 | ||
| ProSiteProfiles | 39 | 96 | 58 | 22.234 | ||
| Gene3D | 39 | 98 | 60 | 9.5E-30 | ||
| PRINTS | 40 | 51 | 12 | 1.3E-9 | ||
| PRINTS | 62 | 78 | 17 | 1.3E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0011100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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