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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0012000 |
| Transcript ID | LotjaGi5g1v0012000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein; TAIR: AT1G35180.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136; TrEMBL-Plants: tr|I3T1S6|I3T1S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0012000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2663707..2668722) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGAAGAAGTCAAATAGAGAGGTGAATAAAAAATTTAAAAGGTACAAAAAAATTTCTATTATTATCTATCATCTATC ATAAATTCATAATCATAATTATGGTAGTTGGGTCATAATTTGCTGTAAAGTCCATGCCTACCTGTTCTTGTCAACACTGC ACAGCTTCACCCGTTTCTGGTGGCAGTTCCGCAGTTGTTACATCCATTGCAAGCTATTATTTGTGGTATTTTCTTATCCA TTCTCTTAGATATTAATTATATTGAGTTACAAGGTTTGAAAGTTTAGCTTCTTCACAAATTTATCACACATACATATGTA TGAAAATCTTCACTCTGAGATGTAAGCAAGCATATTTCTCTTAGAATTCCTCATTAGAAATATTGTATATCTGGAGAAAA GTATCAATCTATCAACTCCGTTGAAATTTCATTTTCTCTCTATTACTCTATATGTGCTTAGCATACTTTTCTTTGTCAAT TTTTATAGTGTATGTTTAGATTTTAAAGTCAAAATCAATTCTGCAAGTAGCTTTCGCTTATCTGAATTGATTATGAAAAG AGAAGCAGTCTAAACATGCTTATAGTGTAGTATATCTTCTATGGTAATATATTTGCAGAAACTTCATTTGAAAACAAAAA CAGAATTTTTGCAGCTGGCATGGTATAGAGAGAAATGGAAGACTACATTACAAAGATCATAGTTGTTGGGGTTGTTTCAT GGACAACAGCCTTTGTCCTAGTAAGAAGAATCTTTCCCAAACGCACCTTTGATTTCTCCAACCGCATTGTCTCTACAATC CATGCAACTTTAGCAGTAACATTGGCTTCCCTTTCTGTCGAAGATTGGAAGTGTCCAATTTGTCCTGTGGCCTCAAAATC TTCCCATCCAAAGGTACTGAGTTTATTGCATCTTAGAGTTCGGATTAGGCCTACCCTAACTCAAAAACTAGTTCAGAGAC GATGATTACTCTACCTTTTATATAGACTTATTTAGTCATATTTCTAGTGCTACAAACATCACCCTCCAGATGTCCAGTCT TAGTCTTAGACGACAGAGAAGAGTGTTAAAGTATCACATTGATAAGAAATATAGTTAAAATAATTCTTATAAATGTATGA GCAATCATCATCCTTGAGCCTCTATGTTATGGGTTGATTTTGAGGGAAATGTCATCATTTTTATGAATTGTGTAGATTTT GCTTTAAAAGTGGAATGTTTGAACTCTGAGCAGATGCAAGTTCTGGCAGTGAGCCTTTCTTACCTCATTTATGATTTAGT GTGTTGTCTCTTTGATGGAAGAGTCAATATGGACAACACCATCCACCATTTGGTGAGCATTGTTGGAATTGGAGCAGGTC TTTATTATCAAAAGGTATTTAATCACTTGAATTGAATTATTTCTCACTCAGATTGTTTATGTCTAGCATTCTATTCCTTA TTAAAAAAACAGATAGAGTAACAAAAAAATAATTAACAAAAAAAAAACAGATAGAGTATTTAAGAGAATTCATCTGTAAT ACCTAGCAGAGCACTGCTTAAATATATAAAAGAAGGGCACTTATACATAGACCACGATAACGGCAGCAAATTACACCAGA CACTTACTTTTGTGGAGATATTTTACCGCCACAAAGTCTTGTGAGGGTTTTTTACCGTTATAAAGTTGAGATGGTAAAAA ACCACTACAAAAGTGAGTGTATGGTGTGGTAGCTATTGTATATAAGGTTTGTCTATATTTTTTGAAATAAAAATGGTAAA TGATTGATTTTTCTTATATAATCTGGAGGTCGAGTCTTGTGAATGAAAAAAAAAACCCTCTGTTGGAAGAGCTAATCTCA CCATGTTGTGAATGTTCCTGCCTAGAACACAATTGTCTCATGTGAGGGATACATGTGTTGCAACCAAAACAAAAAATGTT TTCAAAAACTTATTTGAGTTTATGCTATAAACCATTATGTAAATGTTTGGACTCTATAAATTGTTTTGTCCTTATTTATT TTCATAAGTTGTTTTTTATTAATATGCACTTATATCTATTTATAAACTATTTTTAGCTTATAAATAATAGTTTATATGAT ATAGCAGTACGTTTAATCCTATTTTTGGAGTTTCTTAAATTTACTTATAAATAAACATTTACATACTGAGTAGCTATTAA CATACATCAAGCTCTTTATGCCCTAACACTCATAGACTCATAGTAGATGCGCTACCGTAGACCTGGAAACAATTTCCACA ATATATTTGAGTAAAACTCAAACAATGAGTTTCTCTCCAAAACCTTGGTGATCAATTCCCGTAAAATTTGGCAATAAATT TCCTTAATTTCTACTAGTACTGCCAAATTGCTTTCTTGATATCAAGGTAGTAACATTTTGCCATATATGTGGAGTGACTG TGAGTAGTGTGGGTCAGAAATGGTGGCGGCATTATGGGTAACAGAAATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTC TGAAGGAGCTTGGTTACAGGGATACCCTCCTTAATTTCACTGCTGATGTAAGTAATTAAGGCCTTATCATAGTACTATAT TTTCTTTCTGCATTACCTGCATCTGTTAGTTATATCATATCACCGACATTTTTGTTGAGCACACCAAATATAATGTGGCT GTTAAATTTAGCTAAATAGAATTCACCTCCTTTGAAGTGAGTACTTTAGATGATAAAAAAAGCATTATTAGTGATTTTTT ATTTATAAGTAAGCATTATTAGTGACTATTTACTTAAAAAAATAATAAAATAATTCAATCACTAGTTGTGATACTTTACA TTTTAAAGTGAGTTCACTCATTTTAAAGGAACCGGACCTAGCTAAATAACGACATACATTTTTCTACATCTAAAATGTCA TAATAAATGTGAGAGGAATTTAATTTTAGCGCATTGCAATTGAAAATATTATATAAGTATACTACTTTCCTTTTTGAAAG AATATATAAGTATACTACTAGTACTAGTTATGTATTGTCATGTTCTTTAATTAGTTTGGCATTTCAAATAGTTGTTAATA TAATCAAATACAAAATTGAATCATTGTTAAAAATATTACATGTTAATAAGTGCTTCAAAATCAAACTCGTGTGGTAATCC CTTCAGACATCTCCTACACAAACATTCAAGCATTAATGGGATTATAACTGCAGAAACAACAAGCACACCTTATTTCTTCA GGGGCAAAATATAGTATTTTTGGACAGGGGCGATATAGTTTTTTTTTATAACGGTGATTCGATTAAAGCCAGAAAGCAGC AAAACCACACCCACATAAGATAAATGGGAAAATCTTACAAGCAATACAACAATGCTTCACACATAATGCCATACATCACA TGACACACTTGATCACAAATCCATAGTAACACAAGGATAAACACAGGAGAAAATAAGAAACCCCATAAATCCATAATAAC ACACAAGTTTGTCACTAAAACTAGGTCTTTGGCTAAATGCTTCTTAAATCATTTTTTTTCGTTTTTTTCCCTCTCTTTAT TTTTGAGCTCAGCCGGCTCTGCCGAAGATGTTGCGATAATGCAATCAAAGAACATTCGGGGCAGCGCACTAAACCCAAGC CACATAGTTGAGTAATCACTCATTGTCATTTTGAAATGGATCTTATGGTTTTATGTTCACTAGCAAATAAGAGGTTAAGC ATAAAATAAAATAAATCAAAACGTGTCAAGAGTTTTTAAGCATGCATGAACCATATCTAAATTAGCCAACAGCTGAATTT GGAACAATGTCACAGATACTATTTGCTGCAATATTTACATTTGCTCGGATGATGGCTGGACCTTGTCTCACTTATGTAAC TTTATCTGCCAACAACCCATTTCTCATAAAGGTATGATTTGTTAGCTTTTCATTAGGAGGAAGTTTTTTCCTCAAAATAA CCTTCCTTTTGTATTCTGGGCTACCCACATCACACATGTGCTTAATTCCTTCCATTGCTACAGGCTATGGGATTGGGTTT GCAGCTGGTAAGCACTTTCTGGTTCTTCAAAATTGTGAGAATAATGAAACACAAATTAACCAAGAGATCAACAATGACAA ATGGCATCAAGCACGCCGACACAAGGAGGAAGATGTCTAACTCACAGTTTCAGCATAGCTAGAGATCAACATTTGAGAAC TTAATAATCTGCTATTTAGTTCGATGATGAGACACGGTGCAAAAGGATAAATCTAAGTGGCTTGATCAATCATTTCAGTG CATGTTTGTAAATTTTTCTATAATTGACTTTAAAGCCAAAACCAATTATGGGGAGAAGTTTCTGTGAGTAATTTTTGGAC GCCAGAATTGATTTTGAGAAAAAATAAGCTAATCTAAACATGCTATCAATTTGTCTTTGTGAAGAAAATATATGTAACTA CACAGCAATTTTGCTGCTAAAGTTGATTGGCCTATTAACCCGGGAGATAACAATATTTTTATTATTTCAAAAAATGGTTA ATATGGAGGCTAGCATAAATGGTTAAAGCAATGTTTGGACACCAGTGCAAATAGACGTTAGCAGTCACTTTGAGACAAAA AGTGAACGGAACTTTTCAATTGCAATGAAAGTTCATTCACATTGAACTCAACTGGATCCAAACACAACACTAAACTATGC AAATTGATTTAATAAGCTGTCTTCAATCTTAAATGGGGAGAAACTCAAAGTTAAGACCCATTTCAAATATCAGTAATATG TCCAATACAAAACTAAAAACCAATGCAATTGTTTAGGAAAATAACTCAACTGAACACCATCTGATTTTTGGTTGATAATT TTTTCATCTAACTGCATTTTCAGATAGTACAAACTACAAAGCATAGCCCAAAAAGGCTACTACTTACCAAGGTCTGACCT TCTGGCCTAAAAAAATGCACTGCCTACGTATCCTGGCTCTGAGAATTTTAACGCAGTTTTTAGTCTTTCCCAAAATCAGC ATTGTAGTGAGCACTGGATTCAAGTTTCTTTGCCTCATTTAGTTTTCTAACAGCCT
CDS sequence (LotjaGi5g1v0012000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACTACATTACAAAGATCATAGTTGTTGGGGTTGTTTCATGGACAACAGCCTTTGTCCTAGTAAGAAGAATCTT TCCCAAACGCACCTTTGATTTCTCCAACCGCATTGTCTCTACAATCCATGCAACTTTAGCAGTAACATTGGCTTCCCTTT CTGTCGAAGATTGGAAGTGTCCAATTTGTCCTGTGGCCTCAAAATCTTCCCATCCAAAGATGCAAGTTCTGGCAGTGAGC CTTTCTTACCTCATTTATGATTTAGTGTGTTGTCTCTTTGATGGAAGAGTCAATATGGACAACACCATCCACCATTTGGT GAGCATTGTTGGAATTGGAGCAGGTCTTTATTATCAAAAGTGTGGGTCAGAAATGGTGGCGGCATTATGGGTAACAGAAA TGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTGAAGGAGCTTGGTTACAGGGATACCCTCCTTAATTTCACTGCTGAT ATACTATTTGCTGCAATATTTACATTTGCTCGGATGATGGCTGGACCTTGTCTCACTTATGTAACTTTATCTGCCAACAA CCCATTTCTCATAAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGCACTTTCTGGTTCTTCAAAATTGTGAGAATAATGA AACACAAATTAACCAAGAGATCAACAATGACAAATGGCATCAAGCACGCCGACACAAGGAGGAAGATGTCTAACTCACAG TTTCAGCATAGCTAG
Protein sequence (LotjaGi5g1v0012000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDYITKIIVVGVVSWTTAFVLVRRIFPKRTFDFSNRIVSTIHATLAVTLASLSVEDWKCPICPVASKSSHPKMQVLAVS LSYLIYDLVCCLFDGRVNMDNTIHHLVSIVGIGAGLYYQKCGSEMVAALWVTEMSSPFLHLRELLKELGYRDTLLNFTAD ILFAAIFTFARMMAGPCLTYVTLSANNPFLIKAMGLGLQLVSTFWFFKIVRIMKHKLTKRSTMTNGIKHADTRRKMSNSQ FQHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 224 | 224 | 2.9E-103 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Phobius | 28 | 160 | 133 | - | – | |
| SMART | 29 | 218 | 190 | 1.2E-37 | ||
| ProSiteProfiles | 29 | 218 | 190 | 36.511 | ||
| Pfam | 33 | 211 | 179 | 2.3E-22 | ||
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 161 | 183 | 23 | - | – | |
| Phobius | 184 | 188 | 5 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 189 | 210 | 22 | - | – | |
| Phobius | 211 | 244 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0012000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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