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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0012000 |
| Transcript ID | LotjaGi5g1v0012000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain protein; TAIR: AT1G35180.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; Swiss-Prot: sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136; TrEMBL-Plants: tr|I3T1S6|I3T1S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0012000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2664559..2668048) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGACTACATTACAAAGATCATAGTTGTTGGGGTTGTTTCATGGACAACAGCCTTTGTCCTAGTAAGAAGAATCTT TCCCAAACGCACCTTTGATTTCTCCAACCGCATTGTCTCTACAATCCATGCAACTTTAGCAGTAACATTGGCTTCCCTTT CTGTCGAAGATTGGAAGTGTCCAATTTGTCCTGTGGCCTCAAAATCTTCCCATCCAAAGGTACTGAGTTTATTGCATCTT AGAGTTCGGATTAGGCCTACCCTAACTCAAAAACTAGTTCAGAGACGATGATTACTCTACCTTTTATATAGACTTATTTA GTCATATTTCTAGTGCTACAAACATCACCCTCCAGATGTCCAGTCTTAGTCTTAGACGACAGAGAAGAGTGTTAAAGTAT CACATTGATAAGAAATATAGTTAAAATAATTCTTATAAATGTATGAGCAATCATCATCCTTGAGCCTCTATGTTATGGGT TGATTTTGAGGGAAATGTCATCATTTTTATGAATTGTGTAGATTTTGCTTTAAAAGTGGAATGTTTGAACTCTGAGCAGA TGCAAGTTCTGGCAGTGAGCCTTTCTTACCTCATTTATGATTTAGTGTGTTGTCTCTTTGATGGAAGAGTCAATATGGAC AACACCATCCACCATTTGGTGAGCATTGTTGGAATTGGAGCAGGTCTTTATTATCAAAAGGTATTTAATCACTTGAATTG AATTATTTCTCACTCAGATTGTTTATGTCTAGCATTCTATTCCTTATTAAAAAAACAGATAGAGTAACAAAAAAATAATT AACAAAAAAAAAACAGATAGAGTATTTAAGAGAATTCATCTGTAATACCTAGCAGAGCACTGCTTAAATATATAAAAGAA GGGCACTTATACATAGACCACGATAACGGCAGCAAATTACACCAGACACTTACTTTTGTGGAGATATTTTACCGCCACAA AGTCTTGTGAGGGTTTTTTACCGTTATAAAGTTGAGATGGTAAAAAACCACTACAAAAGTGAGTGTATGGTGTGGTAGCT ATTGTATATAAGGTTTGTCTATATTTTTTGAAATAAAAATGGTAAATGATTGATTTTTCTTATATAATCTGGAGGTCGAG TCTTGTGAATGAAAAAAAAAACCCTCTGTTGGAAGAGCTAATCTCACCATGTTGTGAATGTTCCTGCCTAGAACACAATT GTCTCATGTGAGGGATACATGTGTTGCAACCAAAACAAAAAATGTTTTCAAAAACTTATTTGAGTTTATGCTATAAACCA TTATGTAAATGTTTGGACTCTATAAATTGTTTTGTCCTTATTTATTTTCATAAGTTGTTTTTTATTAATATGCACTTATA TCTATTTATAAACTATTTTTAGCTTATAAATAATAGTTTATATGATATAGCAGTACGTTTAATCCTATTTTTGGAGTTTC TTAAATTTACTTATAAATAAACATTTACATACTGAGTAGCTATTAACATACATCAAGCTCTTTATGCCCTAACACTCATA GACTCATAGTAGATGCGCTACCGTAGACCTGGAAACAATTTCCACAATATATTTGAGTAAAACTCAAACAATGAGTTTCT CTCCAAAACCTTGGTGATCAATTCCCGTAAAATTTGGCAATAAATTTCCTTAATTTCTACTAGTACTGCCAAATTGCTTT CTTGATATCAAGGTAGTAACATTTTGCCATATATGTGGAGTGACTGTGAGTAGTGTGGGTCAGAAATGGTGGCGGCATTA TGGGTAACAGAAATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTGAAGGAGCTTGGTTACAGGGATACCCTCCTTAA TTTCACTGCTGATGTAAGTAATTAAGGCCTTATCATAGTACTATATTTTCTTTCTGCATTACCTGCATCTGTTAGTTATA TCATATCACCGACATTTTTGTTGAGCACACCAAATATAATGTGGCTGTTAAATTTAGCTAAATAGAATTCACCTCCTTTG AAGTGAGTACTTTAGATGATAAAAAAAGCATTATTAGTGATTTTTTATTTATAAGTAAGCATTATTAGTGACTATTTACT TAAAAAAATAATAAAATAATTCAATCACTAGTTGTGATACTTTACATTTTAAAGTGAGTTCACTCATTTTAAAGGAACCG GACCTAGCTAAATAACGACATACATTTTTCTACATCTAAAATGTCATAATAAATGTGAGAGGAATTTAATTTTAGCGCAT TGCAATTGAAAATATTATATAAGTATACTACTTTCCTTTTTGAAAGAATATATAAGTATACTACTAGTACTAGTTATGTA TTGTCATGTTCTTTAATTAGTTTGGCATTTCAAATAGTTGTTAATATAATCAAATACAAAATTGAATCATTGTTAAAAAT ATTACATGTTAATAAGTGCTTCAAAATCAAACTCGTGTGGTAATCCCTTCAGACATCTCCTACACAAACATTCAAGCATT AATGGGATTATAACTGCAGAAACAACAAGCACACCTTATTTCTTCAGGGGCAAAATATAGTATTTTTGGACAGGGGCGAT ATAGTTTTTTTTTATAACGGTGATTCGATTAAAGCCAGAAAGCAGCAAAACCACACCCACATAAGATAAATGGGAAAATC TTACAAGCAATACAACAATGCTTCACACATAATGCCATACATCACATGACACACTTGATCACAAATCCATAGTAACACAA GGATAAACACAGGAGAAAATAAGAAACCCCATAAATCCATAATAACACACAAGTTTGTCACTAAAACTAGGTCTTTGGCT AAATGCTTCTTAAATCATTTTTTTTCGTTTTTTTCCCTCTCTTTATTTTTGAGCTCAGCCGGCTCTGCCGAAGATGTTGC GATAATGCAATCAAAGAACATTCGGGGCAGCGCACTAAACCCAAGCCACATAGTTGAGTAATCACTCATTGTCATTTTGA AATGGATCTTATGGTTTTATGTTCACTAGCAAATAAGAGGTTAAGCATAAAATAAAATAAATCAAAACGTGTCAAGAGTT TTTAAGCATGCATGAACCATATCTAAATTAGCCAACAGCTGAATTTGGAACAATGTCACAGATACTATTTGCTGCAATAT TTACATTTGCTCGGATGATGGCTGGACCTTGTCTCACTTATGTAACTTTATCTGCCAACAACCCATTTCTCATAAAGGTA TGATTTGTTAGCTTTTCATTAGGAGGAAGTTTTTTCCTCAAAATAACCTTCCTTTTGTATTCTGGGCTACCCACATCACA CATGTGCTTAATTCCTTCCATTGCTACAGGCTATGGGATTGGGTTTGCAGCTGGTAAGCACTTTCTGGTTCTTCAAAATT GTGAGAATAATGAAACACAAATTAACCAAGAGATCAACAATGACAAATGGCATCAAGCACGCCGACACAAGGAGGAAGAT GTCTAACTCACAGTTTCAGCATAGCTAGAGATCAACATTTGAGAACTTAA
CDS sequence (LotjaGi5g1v0012000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGTTCTGGCAGTGAGCCTTTCTTACCTCATTTATGATTTAGTGTGTTGTCTCTTTGATGGAAGAGTCAATATGGA CAACACCATCCACCATTTGGTGAGCATTGTTGGAATTGGAGCAGGTCTTTATTATCAAAAGTGTGGGTCAGAAATGGTGG CGGCATTATGGGTAACAGAAATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTGAAGGAGCTTGGTTACAGGGATACC CTCCTTAATTTCACTGCTGATATACTATTTGCTGCAATATTTACATTTGCTCGGATGATGGCTGGACCTTGTCTCACTTA TGTAACTTTATCTGCCAACAACCCATTTCTCATAAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGCACTTTCTGGTTCT TCAAAATTGTGAGAATAATGAAACACAAATTAACCAAGAGATCAACAATGACAAATGGCATCAAGCACGCCGACACAAGG AGGAAGATGTCTAACTCACAGTTTCAGCATAGCTAG
Protein sequence (LotjaGi5g1v0012000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVLAVSLSYLIYDLVCCLFDGRVNMDNTIHHLVSIVGIGAGLYYQKCGSEMVAALWVTEMSSPFLHLRELLKELGYRDT LLNFTADILFAAIFTFARMMAGPCLTYVTLSANNPFLIKAMGLGLQLVSTFWFFKIVRIMKHKLTKRSTMTNGIKHADTR RKMSNSQFQHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 6.0E-72 | ||
| ProSiteProfiles | 1 | 145 | 145 | 31.053 | ||
| Phobius | 1 | 87 | 87 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| SMART | 1 | 145 | 145 | 4.3E-9 | ||
| Pfam | 3 | 138 | 136 | 7.4E-18 | ||
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 88 | 110 | 23 | - | – | |
| Phobius | 111 | 115 | 5 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 116 | 137 | 22 | - | – | |
| Phobius | 138 | 171 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0012000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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