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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0014500 |
| Transcript ID | LotjaGi5g1v0014500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Yellow stripe-like transporter 1; TAIR: AT5G53550.1 YELLOW STRIPE like 3; Swiss-Prot: sp|Q2EF88|YSL3_ARATH Metal-nicotianamine transporter YSL3; TrEMBL-Plants: tr|A0A0B2QDZ9|A0A0B2QDZ9_GLYSO Metal-nicotianamine transporter YSL3; Found in the gene: LotjaGi5g1v0014500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3051869..3056626) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTAGTACAACATATGACAACACTACTCCGATCCGTTGCACACTTGCATATATTGTACTACAATGCGGGGGTTGGTG TTGATCTTTTTGGTCCCTTTAAAGCCTGAGACATTAACATCGGATTATTGTGCTGCATGCAAATCTTTCCGCCTTCAGTC TAGTTTTCTAGATTGGTTTCTGAGTTCTGACAAAACTTTTGAGAGATTCTGGTGTGTGTTTGTGAGATTCTTGTCTCACC CCATTTGAGTTTCTTCGACTCATCAAATTCTTGTTCATTGCCGCAGAGGTACGATGTTTAATTTGTTGGGGTTTCATTAT TCTCGCGCTTCAGAATCAATTATACAAGAATTTCCAAACATGCGCAACGTAGCAATGTCACGTGGGGGGCATAACATGGA AAGAACTTTTCCCTAGCATGATGGGATTCTCATTCCTTTTGTTAATAATGGGTGAGACAAATTTTTCACTTGCTAACTTG TTATCCAATTTGGATTCCAGTTCCTTTTGTAGGATATATGATGAATGCAATGAGCAATATAAACAATGAAGAACTCAAAG AGATTGAGAGTTACGAAAGAGATGACATTGAAAAGATTGTGGTTGAAGCAGAGGATGTGAGCAAAATAGCACCATGGAGA GAACAAATCACAATGAGAGGACTAATAACAAGCTTCCTAATTGGCATCATGTATAGTGTCATTGTGATGAAGCTGAACCT CACAACTGGTTTAGTTCCTAATCTCAATGTTTCAGCTGCTTTACTTGGCTTTGTGTTGATTCGAGCTTGGACTACTCTGC TTGAGAAAGCAAAGATTGTTTCAACACCTTTCACTAGACAGGAGAACACCATAATTCAGACTTGTGCTGTTGCATGCTAT AGCGCGTCTTTTGGAGGTCGGTTTTTTCTTAATTTGATTAGCTTATCTTTCATCAGAATCAACTCTGAAACCTATATACT ACGCACATAAACATCTATCCATAATTGATTTTGCCTTCAGAATCAACTGTAGAAGGGTTTCCAAACACGCACTTAATTAG TATTTGTATAATCAATGATGGGTGTATATATCTGTAATGTGTTAAAATTTTACTTGTTTATTTGTAGGTGGTTTTGGGTC TCACCTCTTGGGTTTGAATAGGAGGACATATGAGCAAGTAGGGGGGGTTGATACACCGGGGAATACTCCTATGACCAAGG AGCCTGGAATTGGCTGGATGATGGGCTTTCTCTTTGTGACATACTTTGTTGGGTTAGCATCATTAGTTCCCCTTAGAAAG GTATTTGTATTTCTTATCCTTCTATGACACTTTCTCTTGCTTAATTGAATACATTTGGTTATTCAGAGATTGTTCATGAT TTAGACTTTTCCAAGGCAATCAGAATTGATTTAGACTTCAGATAAGATTATACAACGTGTTCCCCGAATATGCACATAGA TAAATTGGGTTTGGAGTAACTGGAACGGTGTTGCTGATGCAACTTATGTTATTTAACAGATGATGATAATAGACTACAAA TTAACTTATCCAAGTGGAACTGCTACAGGCGTTCTGATTAATGGATTCCATACTTCTAAAGGAGATGGAATGGCCAAGTA TGAATCTGATTTTGGTTTGTGTTATTTTTTCTTTTTATGTTAAACATAGTGAATCTGTATTCAATATAAAACTAGTTCAA CTTTTTTCACAGGAAGCAGGTTCATGGTTTCATGAGGTTCTTCTCATTCAGTTTTCTTTGGTCTTTCTTCCAATGGTTCT ATGCTGGTGGAGATAAATGTGGATTTGCTCAGTTTCCTACTTTTGGGTTGAAAGCATGGAAAAACACGTGTGTTCTTCGA TTCCATCTTCCATTAACTTCAATGAGTCTGAACCATGAAAAAATTGTCCATTATCATTTATCAAATGCTTTGAATTTTGC AGATTTTTCTTTGATTTCAGCATGACTTATGTTGGAGCCGGAATGATTTGTTCCCATCTTGTCAATTTATCCTTGCTTTT TGGTGCTGTGCTCTCATGGGGTGTTATGTGGCCATTGATCAGAGGACTACATGGAAAATGGTTCCCTGACAATTTATCTG AGAGTAGTATGAAGAGTCTTAATGGTTATAAGGTCTGAGCAAAAATCAACGGACTAGTTTAATTTAAGATCTTCCCTTTT CAAGTGTTAACTTTCTTTCATTTCCTTGATGCAGATTTTTATTTCCATTGCCTTAATCCTTGGTGATGGATCCTACAATA TTGTCAAAATAGTCTATTTTGCTGCTGCAAATATCCATGCCACCATGAAAAAGAGGAATCACAAAACATGTAAACAACTT TCCCTTTTATCATTTTTTTCAGTTCATGGGTTATGTAAATCTTAAGTTTAGGTTTTCAGATGCTTATTTTTCAGTTACCT CTTCATTTAATCCTTTCCCTAAAATAGAAGAAGCAAACCATATCAACGGGACAAGTGATTAATATATTGTTGTCATAAAC CAACTATTCTAAAAGCTTACACTTTCCCTATGAAAGAGACCATTGGAATCACAAAATATATTTGGCTTTTAGTTGAGAAC CCTCACAATCATGGTTTTGACAAAAGTAACAATAATATCTTTTACCAAAAAGCATGGTTTCAGGAGGCCCAAATGCAAAA TCAAACACATTATCTATTCTAAGCTCCTAGTGTTCTGTTTGTATGAGGTAATCATTCAATGTATGTTCTGTTTTGCTTGC TCAACTTGTAACAAAATAACATCGCAGCCAGAATTTATCTCTGCAGCACTTTTTTAACTGTTGGCCAACCAGCTATCAGA AAAGCTTAAACTGTTGGGTGGACACATATGAATGGTTTTATATTATATTTGTAACAAGTCATCTCACGCAAGAGCCCGTC GGGCATAAAACGTGGACAATGCACATACCCACCTACCACATGTTGAAATTCAACATTTTATTAGAATAATAAGGGAAACA GTGATCGAACTCTGAACGTCTTGGTCATAGAGGCTCTGATATATGAATTGTTTTATATTTTGTTTCTGTCAAGAACATAA AATAAGCTAATTCAACAATGGCCTAATAGAGATAACTTAGTTACTGTACCTGCATTTGGTGTTTAGCCTATCAAAAGTGT TCTAAGCTGAACAGTAGTTTATGGTATCAATGAGTTTCATATTTCTTTGTGAACTCTAATAATGTTTTTTTGTGATGTGC AGTTTCATTATCAGATAACCAGAAGCAGCCTAATGATTTTCTTAGACTCAATGATGAAGTGTTCATGAAAGAAAGCATTC CAATGTGGTTGGCATGTGTAGGGTACATTCTCCTCTCCGTCATTTCCATCATTGTGATCCCTTTCATCTTCCCTCAGGTG AAGTGGTACTATGTGGTAGTTGCCTATGTTCTTGCACCCTTTCTCGGCTTCTGCAACGCCTACGGCTCCGGCTTAACCGA CATGAACATGGCCTACAACTACGGCAAAGTGGCCCTCTTTGTGCTTGCAGCCTTAGGTGGGGAAACTAATGGTGTAGTTG CTGGACTTGTAGGGTGTGGTGTGATCAAATCCCTAGTTTCCACCTCATCTGATTTGATGCATGATTTCAAGACTGGCCAT CTAACCTTCACGTCACCGAGATCAATGCTTGTAGCTCAAGCTATCGGGACAGTAATAGGTTGTGTTGTTGCTCCACTCAC ATTCTTTCTTTTCTACAAGGCTTTTGATGTGGGGAACCCAGATGGTGAGTACAAAGCTCCATATGCAATCATATATAGAA ACATGGCAATTCTCGGTGTTGAAGGGTTCTCAGCTCTCCCCCAACATTGCTTGGAGCTATGTTGTGGTTTTTTTGCATTC GCTGTGGTGACCAACTTGGTGAGAGATTTGAATCCAAAAAACATTGGGAGGTGGATTCCACTTCCAATGGCAATGGCTGT GCCATTTGTGGTCGGTGCTTACTTTGCAATTGACATGTGTATGGGGAGTTTGATTGTGTATGTTTGGGGTGCTTTGAAAA GGAAAGAAGCTGGTTTGATGATTCCAGCAGTTGCTTCTGGTTTGATTTGTGGAGATGGGTTGTGGATTCTTCCTTCTTCT GTTCTTGCTTTGTTCAAGGTTCGTCCCCCAATGTGCATGAGCTTCTTGGCATCCAAATAGAAAAGTTCAATTGCAGAGAC CAGAGGAAATAGTTAAAACTTACTCATGGTGATTGTGATCTTACTATGATGGTACAAAGGCCAGTTTCATAAAGATCCTA GTCAAAGGAATGTGCAGATTTGTATAAAATTAGTTTACATGGCTAGGGAAGAATAAGTATGAACATGTCACAGAAATGTT GTGACATATTTTTGGCATTTGACAGGGTGAATGACCCAACTTGAGGATGCTACCCCTCACTTTGTTGTTTTTTTCTATGA GCAAGAGAATTATTTTAAGGGAAAAGAACATGTTTGAGCACAAGATGTAACCAAAACCGAGATACAGAATTAAATTACAA AAGAAAAAGTTGACAAATTGATGTTACAACCAAGTCAAGAGTCATGAAGTTCTTCTGAGCACCTTACTCTCTCTACCTTT GATGCAAACACCAACTTTTTGGAACTATAAACAACCAAATGGAAGCGATTCCTGGTAGAGAAACAGAGTAAAGAAGTGTT TTTTCCTTGCCCTCAACCATCACCAAGATCTTAGCTTAATCAGATGAAAAATCTCAGAGGTGCAAACCTTTGCCTCACCT TAAGTAATTGATGTGAACAGTTTTTATTATTATTATTT
CDS sequence (LotjaGi5g1v0014500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATGCAATGAGCAATATAAACAATGAAGAACTCAAAGAGATTGAGAGTTACGAAAGAGATGACATTGAAAAGAT TGTGGTTGAAGCAGAGGATGTGAGCAAAATAGCACCATGGAGAGAACAAATCACAATGAGAGGACTAATAACAAGCTTCC TAATTGGCATCATGTATAGTGTCATTGTGATGAAGCTGAACCTCACAACTGGTTTAGTTCCTAATCTCAATGTTTCAGCT GCTTTACTTGGCTTTGTGTTGATTCGAGCTTGGACTACTCTGCTTGAGAAAGCAAAGATTGTTTCAACACCTTTCACTAG ACAGGAGAACACCATAATTCAGACTTGTGCTGTTGCATGCTATAGCGCGTCTTTTGGAGGTGGTTTTGGGTCTCACCTCT TGGGTTTGAATAGGAGGACATATGAGCAAGTAGGGGGGGTTGATACACCGGGGAATACTCCTATGACCAAGGAGCCTGGA ATTGGCTGGATGATGGGCTTTCTCTTTGTGACATACTTTGTTGGGTTAGCATCATTAGTTCCCCTTAGAAAGATGATGAT AATAGACTACAAATTAACTTATCCAAGTGGAACTGCTACAGGCGTTCTGATTAATGGATTCCATACTTCTAAAGGAGATG GAATGGCCAAGAAGCAGGTTCATGGTTTCATGAGGTTCTTCTCATTCAGTTTTCTTTGGTCTTTCTTCCAATGGTTCTAT GCTGGTGGAGATAAATGTGGATTTGCTCAGTTTCCTACTTTTGGGTTGAAAGCATGGAAAAACACATTTTTCTTTGATTT CAGCATGACTTATGTTGGAGCCGGAATGATTTGTTCCCATCTTGTCAATTTATCCTTGCTTTTTGGTGCTGTGCTCTCAT GGGGTGTTATGTGGCCATTGATCAGAGGACTACATGGAAAATGGTTCCCTGACAATTTATCTGAGAGTAGTATGAAGAGT CTTAATGGTTATAAGATTTTTATTTCCATTGCCTTAATCCTTGGTGATGGATCCTACAATATTGTCAAAATAGTCTATTT TGCTGCTGCAAATATCCATGCCACCATGAAAAAGAGGAATCACAAAACATTTTCATTATCAGATAACCAGAAGCAGCCTA ATGATTTTCTTAGACTCAATGATGAAGTGTTCATGAAAGAAAGCATTCCAATGTGGTTGGCATGTGTAGGGTACATTCTC CTCTCCGTCATTTCCATCATTGTGATCCCTTTCATCTTCCCTCAGGTGAAGTGGTACTATGTGGTAGTTGCCTATGTTCT TGCACCCTTTCTCGGCTTCTGCAACGCCTACGGCTCCGGCTTAACCGACATGAACATGGCCTACAACTACGGCAAAGTGG CCCTCTTTGTGCTTGCAGCCTTAGGTGGGGAAACTAATGGTGTAGTTGCTGGACTTGTAGGGTGTGGTGTGATCAAATCC CTAGTTTCCACCTCATCTGATTTGATGCATGATTTCAAGACTGGCCATCTAACCTTCACGTCACCGAGATCAATGCTTGT AGCTCAAGCTATCGGGACAGTAATAGGTTGTGTTGTTGCTCCACTCACATTCTTTCTTTTCTACAAGGCTTTTGATGTGG GGAACCCAGATGGTGAGTACAAAGCTCCATATGCAATCATATATAGAAACATGGCAATTCTCGGTGTTGAAGGGTTCTCA GCTCTCCCCCAACATTGCTTGGAGCTATGTTGTGGTTTTTTTGCATTCGCTGTGGTGACCAACTTGGTGAGAGATTTGAA TCCAAAAAACATTGGGAGGTGGATTCCACTTCCAATGGCAATGGCTGTGCCATTTGTGGTCGGTGCTTACTTTGCAATTG ACATGTGTATGGGGAGTTTGATTGTGTATGTTTGGGGTGCTTTGAAAAGGAAAGAAGCTGGTTTGATGATTCCAGCAGTT GCTTCTGGTTTGATTTGTGGAGATGGGTTGTGGATTCTTCCTTCTTCTGTTCTTGCTTTGTTCAAGGTTCGTCCCCCAAT GTGCATGAGCTTCTTGGCATCCAAATAG
Protein sequence (LotjaGi5g1v0014500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNAMSNINNEELKEIESYERDDIEKIVVEAEDVSKIAPWREQITMRGLITSFLIGIMYSVIVMKLNLTTGLVPNLNVSA ALLGFVLIRAWTTLLEKAKIVSTPFTRQENTIIQTCAVACYSASFGGGFGSHLLGLNRRTYEQVGGVDTPGNTPMTKEPG IGWMMGFLFVTYFVGLASLVPLRKMMIIDYKLTYPSGTATGVLINGFHTSKGDGMAKKQVHGFMRFFSFSFLWSFFQWFY AGGDKCGFAQFPTFGLKAWKNTFFFDFSMTYVGAGMICSHLVNLSLLFGAVLSWGVMWPLIRGLHGKWFPDNLSESSMKS LNGYKIFISIALILGDGSYNIVKIVYFAAANIHATMKKRNHKTFSLSDNQKQPNDFLRLNDEVFMKESIPMWLACVGYIL LSVISIIVIPFIFPQVKWYYVVVAYVLAPFLGFCNAYGSGLTDMNMAYNYGKVALFVLAALGGETNGVVAGLVGCGVIKS LVSTSSDLMHDFKTGHLTFTSPRSMLVAQAIGTVIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIIYRNMAILGVEGFS ALPQHCLELCCGFFAFAVVTNLVRDLNPKNIGRWIPLPMAMAVPFVVGAYFAIDMCMGSLIVYVWGALKRKEAGLMIPAV ASGLICGDGLWILPSSVLALFKVRPPMCMSFLASK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| Coils | 2 | 22 | 21 | - | – | |
| PANTHER | 25 | 673 | 649 | 0.0 | – | |
| PANTHER | 25 | 673 | 649 | 0.0 | – | |
| TIGRFAM | 37 | 654 | 618 | 4.9E-115 | ||
| Pfam | 43 | 658 | 616 | 5.0E-139 | ||
| Phobius | 44 | 66 | 23 | - | – | |
| TMHMM | 45 | 64 | 20 | - | – | |
| Phobius | 67 | 71 | 5 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 72 | 91 | 20 | - | – | |
| Phobius | 92 | 111 | 20 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 112 | 134 | 23 | - | – | |
| Phobius | 135 | 160 | 26 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 161 | 182 | 22 | - | – | |
| Phobius | 183 | 222 | 40 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 223 | 241 | 19 | - | – | |
| Phobius | 242 | 260 | 19 | - | – | |
| Phobius | 261 | 279 | 19 | - | – | |
| TMHMM | 263 | 282 | 20 | - | – | |
| Phobius | 280 | 285 | 6 | - | – | |
| TMHMM | 284 | 306 | 23 | - | – | |
| Phobius | 286 | 304 | 19 | - | – | |
| Phobius | 305 | 323 | 19 | - | – | |
| Phobius | 324 | 349 | 26 | - | – | |
| TMHMM | 326 | 348 | 23 | - | – | |
| Phobius | 350 | 390 | 41 | - | – | |
| Phobius | 391 | 412 | 22 | - | – | |
| TMHMM | 391 | 413 | 23 | - | – | |
| Phobius | 413 | 417 | 5 | - | – | |
| TMHMM | 418 | 440 | 23 | - | – | |
| Phobius | 418 | 438 | 21 | - | – | |
| Phobius | 439 | 505 | 67 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 506 | 528 | 23 | - | – | |
| TMHMM | 506 | 528 | 23 | - | – | |
| Phobius | 529 | 561 | 33 | - | – | |
| Phobius | 562 | 583 | 22 | - | – | |
| Phobius | 584 | 594 | 11 | - | – | |
| Phobius | 595 | 625 | 31 | - | – | |
| TMHMM | 602 | 624 | 23 | - | – | |
| Phobius | 626 | 636 | 11 | - | – | |
| Phobius | 637 | 661 | 25 | - | – | |
| TMHMM | 639 | 661 | 23 | - | – | |
| Phobius | 662 | 675 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0014500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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