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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0015100 |
| Transcript ID | LotjaGi5g1v0015100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G47270.1 tubby like protein 6; Swiss-Prot: sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5; TrEMBL-Plants: tr|I1M8B1|I1M8B1_SOYBN Tubby-like F-box protein; Found in the gene: LotjaGi5g1v0015100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3075154..3080914) extracted from Lotus japonicus Gifu genome v1.2.
AACCAATTATAGTATAAAACTGGTTTCCATGTTTATTTAATTGAACCGCTAGCACATTCATTTTCAGGTCTGGTGCTGCC ACTAGCTGCAAAGGGCAGAGTTATTTTTGTCTTTGTGGTTGTGAAGAAGGGATGCTTTGCTTGATGCTTGTAAAAAACAA AAAACTAAAGGCACGATGATGTGATGCCCCCATTGGTCTAGTTTTAGTTTTCTCCACAACCTTTGTTTTGTAGTAACTCA CAACACAACTTTGTAACCTATAAACCCACAACCATAGTTTCTTCCTCATTTCCCACTCTCACCTATTTGTTTTATCCAAG ACATTGGCTTTGGAGTTTGAGGCACCATCCTTCGTGTCTTCCAAGTTCTCTGCAAGGTTTCCTCACTTTCTAGGACCTTG TCTCATGGTACATGCACCTAACTCTAAATCTTTGAGCTTTTCCTTTCATTTCTCTTTTTGTTTCTTCAAATAAAATCTTA ATGTGTATGAGTCTGTGTTGGATAAAGGATTTCAATCTTGTTGGTTGTAGCAATAAGTGAGTTTGTATTGAATAAAGAGG ATTTGAATCTTGTAGGTAGTAGCAACTTTTTATGTTTTCAAGTTAAACCTCTCATCCCACTAATTTCAATATATATTCTC ATTCCATCATTGTTATATACAATAAATCTGTTGAACTTAGGCACAAAAATGTTATGCAAAGTTTGATTTTTCTTTTCAAA CACAATGGTTGTGCTAGTTCCACAATGAATTTGGATCCTCTCCGGCAACCACCGTTGATTTTTATAATCAATGGCTAAGA TTAATTTCAATAAAGAATAATTTATCAAATTAGATAGTTGATGGTGATTTATATTTCTGTAGAGGCTGGAGAGGCAATAG AGGATTTGAATTCGTCCTACAACAACACCTATCACAATGTCATTCAAGAGTATTTTGCAAGAGCTAAAGGAGATAGGAGA GGGCATTGGAAACATGTATAGAAGAGGGGCAGAAGCCAAGCATGTACATCGCCATGGAAAATCTCATATTGCACCAGAAT GTTCCTCACCAGCACCAGCACCTTCACCTTCACCTTCATCATCATCATCACAGAGCCGGTGGGCTAGCTTACCCCCTGAG TTGCTACTAGACATAATTCAAAGGGTGGAAGCCAGTGAAACTTCCTGGCCTGCACGCCGAGCGCTTGTAGCGTGTGCATC AGTTTGTAGGTTGTGGAGAGAGATAACAATGGATGTGATCAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATAT CACTTAAGCAGGTAACCTTTACTCATTATATAAATGATATCAATGCATACCAAAGAGCATTTATTTGAGCTCATCTACTA AAAAAACACTAGATAAGCTCCGGTAAGTGATCTTTGGCCTGCTTCCAAACAGGCTCTTATTAGCTTCAAGCTTGGAAGCA CATGGCAATGGTACTAATGTGTAGTTTTTTATCTGTGTTTATCAGCCTGGTCCAAGAGACAATCCAATCCAGTGTTTCAT TAAGAGAGAAAGGATGACTTCAACATATCGTTTATATCTCGGTCTAAGCCCCGGTAAGATTGCTGTGCTCACAAAATTTA TTCTCCATTTCGAAATAGATTTGTTAGAAATTCAGTAATACATTAAGGTTTTTCTTTGAATCTGAAATCAGTATATGGTT GTTTAAGCACCCTCCTTGAGGAATTTTGGTTTTTAGAGTCTCTTCCTTAATAAGTTCTTTAATCATTCTGTTTTCTAGTG AAGCATGACTTCCCTATGTTTCTATTTATGGAACTTTCTATTGAAGATTATGGGTTTGATCCACTGCTTTAGCTCATAGA AAGACTTATCTTGTGTTTTTCTAGTTGTAAAGCAGTTCTACTTATTTTGTGTTTCATATTCTCTTTCAAATTCCAATCAC CTCAGAAGTGGATTACTGAATCCTTGTGATAATTGCAGCTCTTTCTGGTGATATGAGCAAGCTGCTATTGGCAGCAAAGA AGATCAGAAGGGCAACATGCACAGAATTTTTAATATCATTGGTTGCTGATGATTTCTCTAGAGCAAACAATACTTACATT GGAAAGCTGAGGTTAGTTCCTTCTCTCTCTATTGTTCTTAACCTTCTATAACAGGGTCATTATTCTAGTGTTGATTTGAT CTGTGAGCAATTAACAGGTCTAATTTTCTGGGCACCAAGTTTGTGACCTTGGATGGTCATACTCCACATGATTCTTCACT TCCATTGAATTACAAGTTGCAGCAAAGAGTTCATGTGAAACAGGTACTTCCAAGGGCTGCTACTGCTGCTAGTGCTAACT ATAAAGTGGCCACAGTATCTTATGAACTTAATGTTCTCCGAACAAGAGGTCCAAGGCGAATGCGGTGCGCGATGCACTTA ATTCCCATGTCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAAGTTTACCAATTTTCTTAATGAGCATGCATC TACCATGCAAATTCCAAAGGGAAAGAAAGCAGAAACTGTAGTTGAGTTTGGCTCAACTGGCACAAGCAACACTCCAGAAT CAACCCAGAGTTCAGTGGAGCCACTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACAGCTGCAATGTTGGTGCTTG AATTTCAAGGGAAGGGTTACAGTGGCCTCTGTTAAGAACTTCCAGCTTGTAGCAGCTGTAGAACCTTGCTTGAATGTTTC AGCAGCAGAACAAGAGAAAGTGATACTACAGTTTGGGAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCC TCTCCGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGTTTTGACACAAAACCAGCTTGTGAATGATAGTGCCTTTCCTCC ACTGTCACAAATCTTTGATATAAAATGTACATATTTTCGTAAGAAATGAGAGAAGCTGGGGCAAAATAACTCATCATATT GAGTGCTTTCATTCTGCAGGCACAAGTTTGTGTGGTGCTAGCTGTTAGCATTGATGTTTAATGGGAAATCTGTTTGTCTA ATGTAAACAAGTTTTTTTTCTGTTAATTTCCCCAACCACGAATCACATCACATGAGAGAACCACTTTATAGTTTTGTAGT TTTGACAGACAGATTCTAAGTTCCTCATTGCCAAGAATATTATCTTATAATGTAAATGAACAATTAAAATTAAAAAATTA CATTGCACATAAAAATAAGAATAAAAAGTTGCATTTCATAATACATATTGCTGTGGATGTTGTTGACACTGATCAGAATC TCTCATGTGGAAACTCCACGTGTCATTATCATGTTTCAAGTTTTGTGTCTATGTCTCTCGGGTTAAATAGGTGGGACTCT GAATATTTATGAAGATAGAGATAGACACAAAGTTTCACTTGACATTGTCACATGACATAAGAGGATTCTAATCCAGGGAT CCGGTCAACGCTTGCATGATGGAAGTACTACATCACATACGTCTAAAGCAAATGAAACTAGCTCCTTATTTTCTTTAAAA TGAGTATTGCAATACTTTATACAGGGTTACTTTGAGTGTTGAAGGGAAGCTGTGGTTGTTTGTTCTGTCACAGAATCTCA ATGTCTTCAATGTTGTTGTCACAACTGAACTTGCAACCATGACGGCGAGGATTGTCAAGGTTATCCGGGTCAAGGTCATT TGGTTCCCGGAGAAGGCCTCTGGGGTATCTTCTTCTAACTGTTGCCTGAAAGGTTGACTTCTGGGCCCTGCTAATGTTGA ACTCAGTCTTGTGAGTGTCCTTATCATCTGGCTTGATAGGCTCTGCAGGCTTTTGTGGAAGACTCACTTGAACTCCAGGG TCCCTTTCAGTGATTGAACCATGAAACATGAGTGAATTGTTGATGCTTTGTATGTTGCTGTTGACATATGCCTTCCCCAC TTTACTATGCTCCATTGAACTGTCAGAGTCTTCTTCAGTGTTGGTATTTTCCTCTCCATCTGTGGTCACCTCAGGGCTCT CTTCCGGATCAGTCTTGTAGGCGCGGTGTATGTGGATTGACCCCTCTCTCTTCTCTGGCTCGGGACCAACATGCATTGTA GCTCCTCTGTTGTCACCAGCCAGTGTTATGACACTGAATTGTTTGTCAATGTCGTCCATGTCTTGTGTTGGGTGCACAGA GGCTAGTTTGTCAACCAACTTTGAAATATCTTCTTTAATACCTTTTTGCAGTGGTGCCTTTTCCATGCTGGATGAAACAG TTCTTTCTGGACCTGTGGAGCTCAAAACTCTAGTGTCTTTCTCACTGGAGTTGGATGTGGAAAACATTACCTTTCTCTCT ACAGTTTCTCGAACCGCATGTAGCTTCTTATCTGAATGAACCGCATTGGCAGATTGTGCCTTTGCGCCTGAAGCAGATGC TGTGGTATGCCTAGAATGTTGGCTAATAGTTGTGTCTTTGGCTTTTCCTTCCTTTTTGGTTTTGTGTACCGCTTTTTCCT TTTCTTTAGATTGAAGGAACTTGCTTTGGGAGATTGATCTTTCCTCATCGCCTGAAGTTGTTGCTGTAGGCTGTGTAAAC AGATTCTCAGGTTGGGAAGAGGTTTCTGGTGACTTGGGGATAGTTTTCAGTGGTGACTTCATCTTTGGTTCAGCTTCTTG TGGCACAAGTTCAGAAACTGCCACTGTCATCTTCTCTTTTTCTTCTTGGGAGTTAGATGCTGCAGGCGGAGTGCTTTCTT CAGGTTTAGCCTTTAACTCCTCCTCGCCTCGCTCTGAGGCTGAAGGAGACGATGGATGAGGCTGAAAGGAAGGGACAGTT TTAGAGACTGGGGATGAGTCTGGAATGGAACTAGGTTGTTGTTCAGAGCCTGCAGGCGGTGTTGACAAGCTCTCAGGTTG AAAAGAGGTCTCTGGTGACTTGGTGATTGCTCTTAATGGTGAGTGCACTTTCAACTCCGCTTCTTGTGGCGTTGGTTCAG ACACAACCATCTTTTCCTTTTCCTGTTCAAAGGGAGATGATGATGCAGGATGAGTTCTTTCTTCAGCATCAAGCTTTGGC TCCTTCACGGCACCGTCCGAGGCAAAATGAGAGGGAGACTGAGGTTGAGTTTTTGGGGGTGAAGGAACACTATGAGCCTG AGTGGGAGAGCCTGTATGAGATGATGGCGGTGGAGAGATAACCGACTTTGGGGATCTGGATGGAGAAGGGGGTTTCGGCT TAGAAACCGGGGACTCAGTGATCAGAGAAGATGGTGCTGGCTGAGTTGGATGAAGTGGTGATTGCTTTTGAGGTTCAGTT CTTTGTGTTATCTGAGTTTTGGAAGGACTAGAAGGAGACTCTGCAGAGGTTATCTCAGAAGGCCTAATGGGTACATTTGT TGTGTCTGGAGAATTTGATCTATGGTTAAAATTACGAGACAATGATTCAGGGGTTGCTGCTAGCCAAGGGATCCTAAAAC GAAATGAGTGCTTTCTCTGTGCCATGGATGTTTTAAGATTTGATAACCCAAACGAATGGTGTTTTTCCGGTGCTTTGGCT GAATATAATGATGCAGATAGGAATGATTGTTTATGTATATATACATGATTAAGCTTTTATACCTAGGATGCATAATGGGG CTTTCATTGGATAATTTTACTTGAGCTCAAATTTTCTTATTTCTTCGTTTGGAACATTTCAGGCTGATTCCCTTGAAAAA TTCTCCATTGGTTCTTTTCTTAATCATCTTAAACTTCTAATGAAACGTTTTCCATTGTCACAATTAGGGGAAAGAAATTT C
CDS sequence (LotjaGi5g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCAAGAGTATTTTGCAAGAGCTAAAGGAGATAGGAGAGGGCATTGGAAACATGTATAGAAGAGGGGCAGAAGC CAAGCATGTACATCGCCATGGAAAATCTCATATTGCACCAGAATGTTCCTCACCAGCACCAGCACCTTCACCTTCACCTT CATCATCATCATCACAGAGCCGGTGGGCTAGCTTACCCCCTGAGTTGCTACTAGACATAATTCAAAGGGTGGAAGCCAGT GAAACTTCCTGGCCTGCACGCCGAGCGCTTGTAGCGTGTGCATCAGTTTGTAGGTTGTGGAGAGAGATAACAATGGATGT GATCAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTTAAGCAGCCTGGTCCAAGAGACAATCCAATCC AGTGTTTCATTAAGAGAGAAAGGATGACTTCAACATATCGTTTATATCTCGGTCTAAGCCCCGCTCTTTCTGGTGATATG AGCAAGCTGCTATTGGCAGCAAAGAAGATCAGAAGGGCAACATGCACAGAATTTTTAATATCATTGGTTGCTGATGATTT CTCTAGAGCAAACAATACTTACATTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTGTGACCTTGGATGGTCATA CTCCACATGATTCTTCACTTCCATTGAATTACAAGTTGCAGCAAAGAGTTCATGTGAAACAGGTACTTCCAAGGGCTGCT ACTGCTGCTAGTGCTAACTATAAAGTGGCCACAGTATCTTATGAACTTAATGTTCTCCGAACAAGAGGTCCAAGGCGAAT GCGGTGCGCGATGCACTTAATTCCCATGTCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAAGTTTACCAATT TTCTTAATGAGCATGCATCTACCATGCAAATTCCAAAGGGAAAGAAAGCAGAAACTGTAGTTGAGTTTGGCTCAACTGGC ACAAGCAACACTCCAGAATCAACCCAGAGTTCAGTGGAGCCACTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAACA GCTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCCTCTGTTAAGAACTTCCAGCTTGTAGCAGCTGTAG AACCTTGCTTGAATGTTTCAGCAGCAGAACAAGAGAAAGTGATACTACAGTTTGGGAAAATTGGGAAGGACATATTCACC ATGGATTACCGATATCCCCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGTTTTGACACAAAACCAGCTTGTGA ATGA
Protein sequence (LotjaGi5g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFKSILQELKEIGEGIGNMYRRGAEAKHVHRHGKSHIAPECSSPAPAPSPSPSSSSSQSRWASLPPELLLDIIQRVEAS ETSWPARRALVACASVCRLWREITMDVIKTPEQCGWLTFPISLKQPGPRDNPIQCFIKRERMTSTYRLYLGLSPALSGDM SKLLLAAKKIRRATCTEFLISLVADDFSRANNTYIGKLRSNFLGTKFVTLDGHTPHDSSLPLNYKLQQRVHVKQVLPRAA TAASANYKVATVSYELNVLRTRGPRRMRCAMHLIPMSAIQEGGTAPTPLKFTNFLNEHASTMQIPKGKKAETVVEFGSTG TSNTPESTQSSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCLNVSAAEQEKVILQFGKIGKDIFT MDYRYPLSAFQAFAICLSSFDTKPACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 427 | 427 | 4.5E-206 | – | |
| PANTHER | 1 | 427 | 427 | 4.5E-206 | – | |
| MobiDBLite | 26 | 61 | 36 | - | – | |
| SUPERFAMILY | 50 | 106 | 57 | 1.83E-7 | ||
| Pfam | 61 | 108 | 48 | 3.6E-8 | ||
| Gene3D | 62 | 107 | 46 | 4.1E-6 | – | |
| SUPERFAMILY | 111 | 427 | 317 | 5.75E-91 | ||
| Gene3D | 120 | 427 | 308 | 8.5E-92 | ||
| Pfam | 125 | 422 | 298 | 3.6E-91 | ||
| PRINTS | 178 | 194 | 17 | 2.8E-70 | ||
| PRINTS | 194 | 218 | 25 | 2.8E-70 | ||
| PRINTS | 246 | 273 | 28 | 2.8E-70 | ||
| PRINTS | 337 | 354 | 18 | 2.8E-70 | ||
| ProSitePatterns | 355 | 368 | 14 | - | ||
| PRINTS | 355 | 371 | 17 | 2.8E-70 | ||
| PRINTS | 384 | 403 | 20 | 2.8E-70 | ||
| PRINTS | 405 | 427 | 23 | 2.8E-70 | ||
| ProSitePatterns | 412 | 427 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0015100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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