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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0017000 |
Transcript ID | LotjaGi5g1v0017000.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G42720.1 Glycosyl hydrolase family 17 protein; Swiss-Prot: sp|Q9M069|E137_ARATH Glucan endo-1,3-beta-glucosidase 7; TrEMBL-Plants: tr|K7M5G2|K7M5G2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0017000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3247065..3251751) extracted from Lotus japonicus Gifu genome v1.2.
GTATCCACATACATTCCTTCATTATGATTCATATTTTGAATTCCTGAACATATATCGCATTGGCATTGGCATTGGCATTG GCATTGGCATTGGCATATGCTAAGTAAGACACACTAATCAAAATCTACTTTTAAACCATCTTGAAAAGCATTGAAAATAA CTTCACACTTTCAACTCTACCCGTTTTACCCCCAACCCCTTGCTATATATATTTCCATTTCCCCCCTTTCTTTCACTCAG AAGAAGTTCATTCTTTCCTTGCAAGTTCCAACATGGCAATCTTGGTCTCTTCCTCTAGAGTCCTTCTACCTATCCTGCCA CTCTTTCTCGCATTCAATCTTGCAAGTAAGTGTTCTTGAAACCTTGAAATAATCCCACTTACTTGAAACTTATGCACCAC TCTTAAGATTCACAAGACCGAGTCGGGTGAGGTGAAGACAAAATGTTTTTCAACAGTGCTGCTCTTAAGATTCGAACTGT TGACAGTTCAAAGTTCAAACAACCACTTTTTACCACTGGACGAGACGTAGCAAGTTGAAACTTAGATTTTAGATATTTTG TGTCTTTTAATTTGCTATTAACGTGAACAAGAAAGTGTAGTGATAATTGCCACTATTATTCTGTGCAGATTCTGAACCGT TCATCGGCGTGAACTATGGCCAAGTCGCCGATAACCTACCACCGCCGTCAGCCACGGCGAAGCTTCTCCAGTCCACCGCC ATCGGAAAGGTCCGGTTATACGGAACCGACCCGGCGATAATCAAGGCCCTAGCCAACACCGGGATCGGAATCGTGATCGG AGCAGCGAACGGCGACATTCCGGCGCTCGCCTCCGACCCGAACTTCGCGAAAACCTGGGTGAGCTCCAACGTCGCTCCTT ACTACCCCGCCAGCAACATCATCCTCATCACCGTCGGCAACGAGGTGATAACCTCCAATGACACCGGCCTCGTGAACCAG ATGCTGCCGGCAATACAGAACGTGCAAAACGCCCTCGACGCCGCTTCGTTTGGTGGTGGCAAAATCAAGGTCTCGACGGT GCATTCCATGGCGGTTTTGGGTAACTCTGAGCCTCCTTCTGGCGGGAAATTTCACGCTGAATACGACACCGTTTTGCAGG GGTTGTTGTCGTTTAACAATGCTACAGGGTCACCCTTTGCTATCAACCCTTACCCTTACTTTGCCTACAAGAGTGACCCT GGTAGACCTGATAACCTTGCGTTTTGCCTCTTCCAGCCCAACTCGGGCCGGGTTGACCCAAACACCAATCTCAATTACAT GAACATGTTTGATGCTCAGGTGAGTCTAAATATGAACTGTGATGGTTACAATTTTACTTGAAAATAGCTTATCGCGTGTT TATAAACTGTTTTGAACTTATTTTCATAAATCGCTCATATTAGCTTATGATAAGCACTTATTGCTTAGTTAAGTTGTTTT TACTTTATAGTAACATAAGTAATTATGTGATTTTACAATTTAACTTGCAAAAATAAATTCTCTCATAAATGTATCCAAAT TTAATCACTTAATTTCAACTCACTTTTGTCAAAATTTATTTTACCAAAATCAATTCTATCACCACTATCGCTTATGACAT GTTTATAAACCATATTGAGCTTATTTTCATAAATCAGTCGGATTCGCTTATGATAAGCTCTTATTGCGTAGTTAGGTTGT TTTTTTTTGGTGCGTGCTTAGTTAGGTTGTTTACCGTACCATTATGTGATTTTACAATATTACCTTACAAAAATAAGTTT TCTCATAAATGTATCCAAATTTTAATTTTAATCGCTAAATTTGAACTCGCTTTTGTCAAAATTGATTTTACCAAAATCAT TTCTATCCACGATCAATTATTAGAATGTTGATCCAATCACACTCATAGTGTCTTTTAATTGTTAATGTATGTTATGATAT GTGTCTTGTGCCATATAGGTGTTTAATGTTATGTTGTGTTGTGTGCAGGTGGATGCTGTGAGGTCTGCGTTGGATTCTCT GGGGTTTAAGAATGTTGAGATTGTGGTGGCCGAGACTGGGTGGCCTTACAAAGGAGACAACGACGAGGTTGGTCCTAGTC TTGAGAATGCTAAGGCTTACAACGGTAATCTGATTGCGCACCTTCGATCCAAGGTTGGAACCCCACTGATGCCAGGGAAA TCAGTGGACACTTACCTCTTTGCTTTGTACGATGAGGACTTGAAGCCAGGACCTGCTTCTGAGAGAGCATTTGGGCTTTA CAACCCTGATCAATCCATGATCTATGATGCTGGCCTCTCCAAGCAACAACAGCAGAGTAGTAGCCCTTCCCCTGTGGTTG CCCCGGTATGGACATATATTTGAATTCCACTTGCATAACATGAGTACTTTAATATTATCTTACACTTCTATATATGACCA TGGATTGATCCGATGCTGTCATTGATTGAGTAACCAGCTTAAATTGTTACATGGACATGAAGTATATCTGCATAAAGCAT CATTTTTCTTAGTTCTTAATATCTTGAAGCTGTTCTATAGAGTAGTGCTTCTAGTCTAGAGACTAGTGTTTAACAAAATG TGTTTCTGAATTTGATTGAAGACTCCGGATGTGTCAAATTCTCCAGCGACTCAAACTCAAGTCCCAGTGGTGATCCCCCC GGTATATATATCTGAATTCCATGCATGATGACTATACTATTATCAATTTATCATTTTTTTTCTATATATAACCTTTGATT AGTCGAATACTGTCATTGATTGATTAACCAGCTGAAATTGTTACATGGGCATGAACACCATATATGCATAAAGCATCATT TTTCTTAGTTGTCAATATCTTGAAGCTGTTCTAGAGTAGTACTTCTAGTCTAGAGACTAGTGTTTAACAAAATGTATTTC TGAATTTGATTGAAGACTCCGGATGTGTCGAAATCTCCAGTGACTCAAACTCGAGCGCCAACAGGCCCAAGTCCAACGCC AAATAAAGCGGAATCCTTAAACCGACACGACGCCCCCATTTTGCAATCTTTAATCATGTTCACTCTTCTCATCTTAAAGC TGTTCTAGTGTAGAGTAGCTTGTGGTTGTATTTAATAATGTAATATTTCTTAATTTTATTGAAGACTACTCCGGATGTGT CAAAATCTCCTGTGAATCCGACCCCAAGAGTTTCAAGTCCAACGAAACCAAATAATAGTGCAACATGGTGTGTGCCAAAA GCAGGAGTGGCAGATGCAGAGTTACAAGCAAATTTGGATTATGCTTGCGGACAGGGGATAGATTGTAGCTCAATCCAACC AGGAGGAGCTTGCTTTGAACCAAACGCATTAGTGAACCATGCTGCATATGCCATGAATCTCTTGTATCAAAAGTCTGGGC GGAATCCATTCAGTTGTGATTTCTCGCAAACTGCCACTCTATCAACATATAATCCAAGTATGTACCAATGTGATTTCTGT TCAACATGCTTTCTGCCTTTCCCATCTTTGAAAGTTGAAACATTGTGGGGTTCGGGCCTTTTTTATTGGAAACATGTTGA TAGATATCCCATAAGGGTGTCTACACTTTAAATACAAAGAAATAATAGGAAGAGCAGGGTTAAATTAATATATGATAAAT GATATGATCTGATATGAAGATAGACAGAAAAGAATAAGTGAAAATATTATTGGGTTGTCAAAAAATTCAGAATTTTTATG TTGTTCTCTAGTGTGAGGCGAAAAAACTGAATAACTAGTAAGAGATTATTTAGTTAGGTCTCAAGTCTCAAGTCTCAATG CCAAATGCATTGCATGAAAGTTTGATTTGATGTAGTACATTGTTCCACAGGGCACTTTTTTGAAAAAGTTATGATCACCG CATCTAGCTTAGATCCGGTCTAATATATATGAACATGGGATTTCTGATTTTTTTTTGCTAAATACTGCTTTGATCATCCC ACTAAATCGATGTCCTCACTTTTCAATCTTTGCTCTTTGTTTATTTTATAGGTTACAATAATTGCGTGTATGCCGGAGGA GCTGCCTAACCTAAAAAACAAGAAAGTAGATACGTGTGGCCCTTTTTGTTTGTTTAAATTATTCTCTCTTAATGGCTAAG GAATGTTTTTGTTTTGGAGCGCTCTGAAGTAGAAGGGCTTGCATGAAGGTCCTCTATTTAGTGTTACCTTTTTTAATGTC TCTGTCAGAAGGAAGCTTCTGTGTTGTGTTGTCTATGATGTGGGTGAACTGTGAATTGTGATGTGTAGTATATGTATGTA TGTTGAGTCATTATTTAAAATCTCAGGGTCCATGTATATACTATGTTGTACTGGTTCAGTAAAAAGTTTTTCTTTCTTAA GGTTTCGCCAAGTTTTCAGTTTAGTCTAATAAATTAAGTGTGCCACATACACTTAGTGCATGTTTGGAAGCTCGTTTGAT GACAAACACTTATTCTTGATCTTAATGCAGTTTTAGCATATCATATACGGTGCATTTGCCACATAAGAAAAGCCATCTGG TACAAACTACTTATGTGCTAGATATGGAGCAAACAAACATCACAGTATATCATTTATCCTTTTGAGTTACCATGTCCTCT AAGTTCATTGGATAACACAATTTAGTGTACCGACCATTCCATATGTTATCTGCAAGAATCGCATTCACTGCATCAGTTGG ATGAAACTGGTCCCACCAAATATAGTTGGAAGCATTCTTGCATGCCA
CDS sequence (LotjaGi5g1v0017000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATCTTGGTCTCTTCCTCTAGAGTCCTTCTACCTATCCTGCCACTCTTTCTCGCATTCAATCTTGCAAATTCTGA ACCGTTCATCGGCGTGAACTATGGCCAAGTCGCCGATAACCTACCACCGCCGTCAGCCACGGCGAAGCTTCTCCAGTCCA CCGCCATCGGAAAGGTCCGGTTATACGGAACCGACCCGGCGATAATCAAGGCCCTAGCCAACACCGGGATCGGAATCGTG ATCGGAGCAGCGAACGGCGACATTCCGGCGCTCGCCTCCGACCCGAACTTCGCGAAAACCTGGGTGAGCTCCAACGTCGC TCCTTACTACCCCGCCAGCAACATCATCCTCATCACCGTCGGCAACGAGGTGATAACCTCCAATGACACCGGCCTCGTGA ACCAGATGCTGCCGGCAATACAGAACGTGCAAAACGCCCTCGACGCCGCTTCGTTTGGTGGTGGCAAAATCAAGGTCTCG ACGGTGCATTCCATGGCGGTTTTGGGTAACTCTGAGCCTCCTTCTGGCGGGAAATTTCACGCTGAATACGACACCGTTTT GCAGGGGTTGTTGTCGTTTAACAATGCTACAGGGTCACCCTTTGCTATCAACCCTTACCCTTACTTTGCCTACAAGAGTG ACCCTGGTAGACCTGATAACCTTGCGTTTTGCCTCTTCCAGCCCAACTCGGGCCGGGTTGACCCAAACACCAATCTCAAT TACATGAACATGTTTGATGCTCAGGTGGATGCTGTGAGGTCTGCGTTGGATTCTCTGGGGTTTAAGAATGTTGAGATTGT GGTGGCCGAGACTGGGTGGCCTTACAAAGGAGACAACGACGAGGTTGGTCCTAGTCTTGAGAATGCTAAGGCTTACAACG GTAATCTGATTGCGCACCTTCGATCCAAGGTTGGAACCCCACTGATGCCAGGGAAATCAGTGGACACTTACCTCTTTGCT TTGTACGATGAGGACTTGAAGCCAGGACCTGCTTCTGAGAGAGCATTTGGGCTTTACAACCCTGATCAATCCATGATCTA TGATGCTGGCCTCTCCAAGCAACAACAGCAGAGTAGTAGCCCTTCCCCTGTGGTTGCCCCGACTCCGGATGTGTCGAAAT CTCCAGTGACTCAAACTCGAGCGCCAACAGGCCCAAGTCCAACGCCAAATAAAGCGGAATCCTTAAACCGACACGACGCC CCCATTTTGCAATCTTTAATCATGTTCACTCTTCTCATCTTAAAGCTGTTCTAG
Protein sequence (LotjaGi5g1v0017000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAILVSSSRVLLPILPLFLAFNLANSEPFIGVNYGQVADNLPPPSATAKLLQSTAIGKVRLYGTDPAIIKALANTGIGIV IGAANGDIPALASDPNFAKTWVSSNVAPYYPASNIILITVGNEVITSNDTGLVNQMLPAIQNVQNALDAASFGGGKIKVS TVHSMAVLGNSEPPSGGKFHAEYDTVLQGLLSFNNATGSPFAINPYPYFAYKSDPGRPDNLAFCLFQPNSGRVDPNTNLN YMNMFDAQVDAVRSALDSLGFKNVEIVVAETGWPYKGDNDEVGPSLENAKAYNGNLIAHLRSKVGTPLMPGKSVDTYLFA LYDEDLKPGPASERAFGLYNPDQSMIYDAGLSKQQQQSSSPSPVVAPTPDVSKSPVTQTRAPTGPSPTPNKAESLNRHDA PILQSLIMFTLLILKLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 26 | 26 | - | – | |
Phobius | 1 | 26 | 26 | - | – | |
Phobius | 1 | 9 | 9 | - | – | |
Phobius | 10 | 21 | 12 | - | – | |
PANTHER | 14 | 366 | 353 | 3.7E-213 | – | |
PANTHER | 14 | 366 | 353 | 3.7E-213 | – | |
Phobius | 22 | 26 | 5 | - | – | |
Phobius | 27 | 417 | 391 | - | – | |
Gene3D | 29 | 360 | 332 | 1.1E-121 | – | |
Pfam | 30 | 348 | 319 | 1.4E-81 | ||
SUPERFAMILY | 30 | 349 | 320 | 1.3E-89 | ||
MobiDBLite | 351 | 393 | 43 | - | – | |
MobiDBLite | 351 | 396 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0017000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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