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LotjaGi5g1v0018100.1

Overview

Field Value
Gene ID LotjaGi5g1v0018100
Transcript ID LotjaGi5g1v0018100.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T2B7|I3T2B7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:3533995..3538809) extracted from Lotus japonicus Gifu genome v1.2.

GTTAATATTTGACAAATGGATTAGAGAGTTGAGTTGCTAGTTGCTACTAAACTAAAAACACATTTTGTTTGTTCTGTCTA GTGTCTACTTCACTCACTCCTCACTCTCTATTCAGCTGGGACTGTGAGTGTGAGCTTTCACTTCATTGCTTTTTGGAACT TTGTCATTCTCTCTCTAATGGCGGCTCTCTTCCAATCTGTGATTGTAAGTTCTCTTCCTCTTTCATTCATTCATTCACTC ATTCTTCTCAGTTGGGGTTGTAACAATATGTAACACTTGCTTCTTGCTTTTGAGGTCACTTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTCTGCATTAGCATTACCCGGTACTCTTTGAGATCATTCCTTTCT TTACCAAAGTACTAGCATTTTTCTCTCTTTTCTCTGAGATGTTTGTTGCATAGCACTCTTCTGTATGTAGATCTGAACTA AACTTAGAATATCTCTGCTGTGAGGCCTAACTGTTCATTTTTTCATGTTAATTTGGATAGTGCCCCCTCTGTTTCTAGTT CATGCCTGCTCAATTTTTCTGCTCTCAACAACTTTTCTGTGATCTGATACTTGTCCTGGTTTGCTCCTCATTTTGCATAA TGTAGTTAAGGTCAAGATGCTATTTTGTGCTGAGAATTAAGAACCTATTTGGGTTTTTTTCACTCTGGAAATTATTTAGA AGATCTCTTATAAAATATTGGGAAAAAGGGAAAATTTCCCTCAGTGAATGTACCCTTGTCATTACCTCAGAAATTTGTTG GGATTCTTTTCCTTGCTATAGTTCAACAACCAGAGAGTTGCAATTTTAGTTCCACTTGCAACCTCTCTTTTTTCTTCCTG TAAAAAGCTAACTAGCCTCCAGTTGAGAGAGAGAGAGAGGGAGAGAGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGA ATATCTTCATTGATTGTTAAGATTTGTTTTGGTGAAGTTAAATTGAATACTAAGTTTATTAACATGCTTGCAGGCCTTTG GATTCTATATCAATTTGTAAATTTCTTCTTGCACTTAAAAATAGTGCACTAATTGAAATCTGAAGGCATTTTTACTTGTA TTTCCTTTATAATTACTCATAAGAAGCAAGTTGCTGCTGATAAATTTTTTCGAAAAAGTACTCCCTCCGTTCCTATTTAA CTGTCCACTTTGAAGAATTTTTTTTGTTCCTATTTAACTGTCCACTTAGCATTTCAAGAGAGCATTAAATGATGTTTTTA CATATAATGCCCTTAACAGAACAATAAATGAGGAGAGATAACACACTTTAAATGGTAAATTAGGAAAACAATCCTCACTT TTTCTAAAAATCAACAAAATTAATTACACCCTTAATATGTGTGCCTCCACCCAAAGTGGACAGTTAAATAGGAACGGAGG GAGTATGTTTTTAGAATTAAAAAATGTGCAACTTTATTGTCTTTAGAAAAGGAAGGAATTGCCAAGTCTTAGCAAAATAC TTTCTATGCACAATTGAAGATGTGAACATAAGTAGATGATGCACTATCTTAAATGTTTGTGGAGTGCAGGTAGTATGTCA GTCTTCTCCCTAGGGAAAGATGAAATTGAAGTCTAAGAAAGGATGGAAATCTATTGTACCTCTTCATTTGAAAGGAAAGT CAGCGACTCGCTTTTCTTTATTTCGCAAAGTTAATTCAGCTAGCTATGGACCTGGCAAAACACCAGTTTATCTGAATGTG TATGACTTGACACCCATGAATGGTTATGTGCATTGGGCTGGTCTTGGTATATATCACTCTGGTGTAGAAGGTATTATTTA GGCTTCAATGTCTTAAATTTTGATCTTGCTCTGTCTCTTTATCCAGGCATATATGACTTGTAAGTTGTAACTACCGTGCT TTTTTCTCAAATGTAGTACTTCTAGACCGTGTGCTGGAGGAGCATAAATTATTTTCATTTAAATGTGAATTTCATCTTCC AGATAATGAGACAGCCTGGCTGGCAACCTAGGAGACCTAAATTTAAATCCTTGTATGTGATAGTGATATGCCTTCAGTTC AACCTTACCAAGTCTTGCTAGGTTATGCTGTGTCAAAATTATTTCATGACTAGAGAAGGATATTTTTCTTAAGTGGCTGA TGAGTGGTGATTGATTGGATACTAAATTTGCCTAATGCTTATAATCGGTGGCAATATGATAAAAATATTTCTAAACATAT GGTAATTTGGCAGATAATGGCTTTGCAATTGCATTTATAAGAATTTTCAAGTTATTTCTGAAATCACTAATATTTACATA TGAACTTTGAAGTATTCTATGCATCAGTAATGCAAAGTTTAATAGTTCCCTATATATGTTGTTTTATATCTAACATAACA TGTTGATTAGGTATTGTATGATTGTCAATCGTCCTTCTTCCTTCTCTAATATAGCAATGTCAGCATGCAGATTGTCTGAT TGCTTTGCATCTTTTCTCATATAAATTTTTACACTGATAACTTGATGGTACTCTTGAGTGAAGAAACTGGAAAATGCTGC TGAGCACTGAAACACCAATTTGTAACTTCCATTAAGAATATTTGTTCCCATAGTTTCCTTGCTTCGATCTCTTCTTCTTT TCAAGTGCCCTAAATTTTCTCATCTAGAAATCCAAGGGATGTAATTGTTTTTCCTCCGTCATATGCAACTGTATACAGGA TATAAATTAGGGACTTTATTTGTACTCAAGGTGGTTCCCGTATTCCGCATTAAGTTGCTGTTTGGATACCTCTTCTCTTT AAATGTAGCACTTCTATTCTGATGAACTTTACCTGTGTTTTACAGTTCATGGTGTAGAATACGCATTTGGAGCTCATGAC TACGCAACAAGCGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGCTTCAAATTCAGGAAGTCAATATTCATTGGAAC TACATCTTTGGATTCTGTTCAGGTTAGGGAGTTCATGGAACGCCAGTCAGCAAGCTACAATGGTGACACGTATCACTTGA TTGTTAAGAACTGCAATCACTTCTGCAAAGACATCTGCTTCAAGCTGACAGGGAAATCAATTCCAAAGTGGGTTAATCGA CTAGCCAGGCTAGGTATTTTCTCCACTACTTGTTTCATTAAGATGGTAGCTGCAATGTGCTTGATTAGAACAAATGGGGG ATTGAAAGGTTTTATTCAACCTCACTTGTGTTTGGAAGAATTATTTTAGGGGAAGAAATTAACTTTTTACAAGCTTGCCC AAAAAAAAAATCTTTTTACAATTGACCCTCCAAAATCTCATGTTTAGGAGATCTCTAAGTTCATTCCCTTCCTGCCCCTT GCAACTGCTTCTAACCTTATGTTGTCATATATGATTGCTTGTTTTATTTGTATATCTTCATTTCATTATTCTGAAAAATA AAAGCTAACATTTCATGGATATTAGACAGGTTAGAGACATAACACTACATATGAGCTCTGTTCTATGTTTGTGGCGTATT AAAAATAGGACAGAACAAGATAAATTTTGTTTTCACTAAAACAGGTGGACTCCGAGAAATAAAACAAAAGAGACTGTCTC ATTTTGTGCTGTCTGGGGCAGCCGCTTTCTTATGTAGCCTTTGGTTCAGTTTTCTTAGCTTAAAAATTACTATAATGCTA TCCTCTCTGTGCATGGTTGGAAATCTTTCTACAACTGACTCTAAAATCAATTTTAGGGAGAAGCAATTGTAAGTAGCTTT TGGATTTCATTCTGAGAAAAGAGAAGTTGATCCAAACATACCACTAGATATGATGTATACTATTGTTTTATGGCGAAACC TAGTACCACGCATGCATACCCAACATCATCATCAATGTTGATACATTGTGGCAGGTTCAATTTGCAACTGCATTCTTCCT GAAGCACTGAAAATTTCTGCTGTGGGACATGATCCTGATTGTCAGCCTCGTGATAGTGAAAAGAGAAGGCTTCGAAACTC CTTCAATTCCCTGTCCTCGATCTCCATGCGTCAAAAGCAACTGTCTAAATCTTCACTATTTCTGCAGTCGCCACTAAGAG GGTGCTTGTCGTCATCCTGGCCCTCGTGGGAGTTGAGGAAGTCCATTAATCGCTCCTTGAAAGAAAGGTAACTGTTCAAA ATGTAGGAAGGAAATGCATGTATGGTTGTATTCCTACGACTTTTGCTGTCTGTCTTTTGTAAGTAGATTTTAGGTTGTCA CATAACTTGTTCACTTTCAAATACATTTTCTGTTGTCCTTGGCTGTTAAGTTTATCCCTTTCTTATTGAATGTGGCGCAA CGTTTGCCTTCGTCTCATTGATATGGCTTATTGTGCTGTCAATCAAGATGATCCTTCCTGAGCTATGCTGGAGAAAGCTA AGAGAATTGTCAGGTTGAGTTGAGTTTAACTGAAATCTATACATGCTAAGGCTTTATTTTTTGTCAAGGTTACTTAGATT AACATTCAAACGGTTGCCGAGCAGCACTTACAACTTATATCACGTGAGAATAAAACCACATAGTGATTCTACAATACAAG ATAATAAATTAAGAAGGTGATACAAGTAGCTAACACACTAAAAGTCATACCGAGCCCCTAATATCCAAGATTCAACAACA TAACAAGCTGACTTCTGAGCTTGACACTGGAAGAACTCAATCGGCAACATTGAGGGCGAGATGGTGGTGGCAGTGGCTTA GATGGGAGCAGTTGAACTTGGAAATAATACGCATTTGCATGGCACAGAGATCAGCATCCAAAGTCAAATTCTATGAAGGC CATAATTATGCCTGC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0018100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAATTGAAGTCTAAGAAAGGATGGAAATCTATTGTACCTCTTCATTTGAAAGGAAAGTCAGCGACTCGCTTTTCTTT ATTTCGCAAAGTTAATTCAGCTAGCTATGGACCTGGCAAAACACCAGTTTATCTGAATGTGTATGACTTGACACCCATGA ATGGTTATGTGCATTGGGCTGGTCTTGGTATATATCACTCTGGTGTAGAAGTTCATGGTGTAGAATACGCATTTGGAGCT CATGACTACGCAACAAGCGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGCTTCAAATTCAGGAAGTCAATATTCAT TGGAACTACATCTTTGGATTCTGTTCAGGTTAGGGAGTTCATGGAACGCCAGTCAGCAAGCTACAATGGTGACACGTATC ACTTGATTGTTAAGAACTGCAATCACTTCTGCAAAGACATCTGCTTCAAGCTGACAGGGAAATCAATTCCAAAGTGGGTT AATCGACTAGCCAGGCTAGGTTCAATTTGCAACTGCATTCTTCCTGAAGCACTGAAAATTTCTGCTGTGGGACATGATCC TGATTGTCAGCCTCGTGATAGTGAAAAGAGAAGGCTTCGAAACTCCTTCAATTCCCTGTCCTCGATCTCCATGCGTCAAA AGCAACTGTCTAAATCTTCACTATTTCTGCAGTCGCCACTAAGAGGGTGCTTGTCGTCATCCTGGCCCTCGTGGGAGTTG AGGAAGTCCATTAATCGCTCCTTGAAAGAAAGGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0018100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLKSKKGWKSIVPLHLKGKSATRFSLFRKVNSASYGPGKTPVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGA HDYATSGVFEVEPRQCPGFKFRKSIFIGTTSLDSVQVREFMERQSASYNGDTYHLIVKNCNHFCKDICFKLTGKSIPKWV NRLARLGSICNCILPEALKISAVGHDPDCQPRDSEKRRLRNSFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSSWPSWEL RKSINRSLKER
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12378:SF48
11 247 237 5.9E-140 –
PANTHER
PTHR12378
11 247 237 5.9E-140
IPR008580
Gene3D
G3DSA:3.90.1720.30
37 184 148 2.6E-35
IPR042266
ProSiteProfiles
PS51858
41 178 138 57.664 –
SMART
SM01179
41 179 139 2.4E-54
IPR008580
Pfam
PF05903
42 176 135 2.5E-45
IPR008580

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0018100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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