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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0018100 |
| Transcript ID | LotjaGi5g1v0018100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PPPDE thiol peptidase family protein, putative; TAIR: AT1G47740.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|I3T2B7|I3T2B7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3535614..3538145) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATTGAAGTCTAAGAAAGGATGGAAATCTATTGTACCTCTTCATTTGAAAGGAAAGTCAGCGACTCGCTTTTCTTT ATTTCGCAAAGTTAATTCAGCTAGCTATGGACCTGGCAAAACACCAGTTTATCTGAATGTGTATGACTTGACACCCATGA ATGGTTATGTGCATTGGGCTGGTCTTGGTATATATCACTCTGGTGTAGAAGGTATTATTTAGGCTTCAATGTCTTAAATT TTGATCTTGCTCTGTCTCTTTATCCAGGCATATATGACTTGTAAGTTGTAACTACCGTGCTTTTTTCTCAAATGTAGTAC TTCTAGACCGTGTGCTGGAGGAGCATAAATTATTTTCATTTAAATGTGAATTTCATCTTCCAGATAATGAGACAGCCTGG CTGGCAACCTAGGAGACCTAAATTTAAATCCTTGTATGTGATAGTGATATGCCTTCAGTTCAACCTTACCAAGTCTTGCT AGGTTATGCTGTGTCAAAATTATTTCATGACTAGAGAAGGATATTTTTCTTAAGTGGCTGATGAGTGGTGATTGATTGGA TACTAAATTTGCCTAATGCTTATAATCGGTGGCAATATGATAAAAATATTTCTAAACATATGGTAATTTGGCAGATAATG GCTTTGCAATTGCATTTATAAGAATTTTCAAGTTATTTCTGAAATCACTAATATTTACATATGAACTTTGAAGTATTCTA TGCATCAGTAATGCAAAGTTTAATAGTTCCCTATATATGTTGTTTTATATCTAACATAACATGTTGATTAGGTATTGTAT GATTGTCAATCGTCCTTCTTCCTTCTCTAATATAGCAATGTCAGCATGCAGATTGTCTGATTGCTTTGCATCTTTTCTCA TATAAATTTTTACACTGATAACTTGATGGTACTCTTGAGTGAAGAAACTGGAAAATGCTGCTGAGCACTGAAACACCAAT TTGTAACTTCCATTAAGAATATTTGTTCCCATAGTTTCCTTGCTTCGATCTCTTCTTCTTTTCAAGTGCCCTAAATTTTC TCATCTAGAAATCCAAGGGATGTAATTGTTTTTCCTCCGTCATATGCAACTGTATACAGGATATAAATTAGGGACTTTAT TTGTACTCAAGGTGGTTCCCGTATTCCGCATTAAGTTGCTGTTTGGATACCTCTTCTCTTTAAATGTAGCACTTCTATTC TGATGAACTTTACCTGTGTTTTACAGTTCATGGTGTAGAATACGCATTTGGAGCTCATGACTACGCAACAAGCGGTGTTT TTGAGGTTGAACCTCGGCAATGCCCAGGCTTCAAATTCAGGAAGTCAATATTCATTGGAACTACATCTTTGGATTCTGTT CAGGTTAGGGAGTTCATGGAACGCCAGTCAGCAAGCTACAATGGTGACACGTATCACTTGATTGTTAAGAACTGCAATCA CTTCTGCAAAGACATCTGCTTCAAGCTGACAGGGAAATCAATTCCAAAGTGGGTTAATCGACTAGCCAGGCTAGGTATTT TCTCCACTACTTGTTTCATTAAGATGGTAGCTGCAATGTGCTTGATTAGAACAAATGGGGGATTGAAAGGTTTTATTCAA CCTCACTTGTGTTTGGAAGAATTATTTTAGGGGAAGAAATTAACTTTTTACAAGCTTGCCCAAAAAAAAAATCTTTTTAC AATTGACCCTCCAAAATCTCATGTTTAGGAGATCTCTAAGTTCATTCCCTTCCTGCCCCTTGCAACTGCTTCTAACCTTA TGTTGTCATATATGATTGCTTGTTTTATTTGTATATCTTCATTTCATTATTCTGAAAAATAAAAGCTAACATTTCATGGA TATTAGACAGGTTAGAGACATAACACTACATATGAGCTCTGTTCTATGTTTGTGGCGTATTAAAAATAGGACAGAACAAG ATAAATTTTGTTTTCACTAAAACAGGTGGACTCCGAGAAATAAAACAAAAGAGACTGTCTCATTTTGTGCTGTCTGGGGC AGCCGCTTTCTTATGTAGCCTTTGGTTCAGTTTTCTTAGCTTAAAAATTACTATAATGCTATCCTCTCTGTGCATGGTTG GAAATCTTTCTACAACTGACTCTAAAATCAATTTTAGGGAGAAGCAATTGTAAGTAGCTTTTGGATTTCATTCTGAGAAA AGAGAAGTTGATCCAAACATACCACTAGATATGATGTATACTATTGTTTTATGGCGAAACCTAGTACCACGCATGCATAC CCAACATCATCATCAATGTTGATACATTGTGGCAGGTTCAATTTGCAACTGCATTCTTCCTGAAGCACTGAAAATTTCTG CTGTGGGACATGATCCTGATTGTCAGCCTCGTGATAGTGAAAAGAGAAGGCTTCGAAACTCCTTCAATTCCCTGTCCTCG ATCTCCATGCGTCAAAAGCAACTGTCTAAATCTTCACTATTTCTGCAGTCGCCACTAAGAGGGTGCTTGTCGTCATCCTG GCCCTCGTGGGAGTTGAGGAAGTCCATTAATCGCTCCTTGAAAGAAAGGTAA
CDS sequence (LotjaGi5g1v0018100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTGAAGTCTAAGAAAGGATGGAAATCTATTGTACCTCTTCATTTGAAAGGAAAGTCAGCGACTCGCTTTTCTTT ATTTCGCAAAGTTAATTCAGCTAGCTATGGACCTGGCAAAACACCAGTTTATCTGAATGTGTATGACTTGACACCCATGA ATGGTTATGTGCATTGGGCTGGTCTTGGTATATATCACTCTGGTGTAGAAGTTCATGGTGTAGAATACGCATTTGGAGCT CATGACTACGCAACAAGCGGTGTTTTTGAGGTTGAACCTCGGCAATGCCCAGGCTTCAAATTCAGGAAGTCAATATTCAT TGGAACTACATCTTTGGATTCTGTTCAGGTTAGGGAGTTCATGGAACGCCAGTCAGCAAGCTACAATGGTGACACGTATC ACTTGATTGTTAAGAACTGCAATCACTTCTGCAAAGACATCTGCTTCAAGCTGACAGGGAAATCAATTCCAAAGTGGGTT AATCGACTAGCCAGGCTAGGTTCAATTTGCAACTGCATTCTTCCTGAAGCACTGAAAATTTCTGCTGTGGGACATGATCC TGATTGTCAGCCTCGTGATAGTGAAAAGAGAAGGCTTCGAAACTCCTTCAATTCCCTGTCCTCGATCTCCATGCGTCAAA AGCAACTGTCTAAATCTTCACTATTTCTGCAGTCGCCACTAAGAGGGTGCTTGTCGTCATCCTGGCCCTCGTGGGAGTTG AGGAAGTCCATTAATCGCTCCTTGAAAGAAAGGTAA
Protein sequence (LotjaGi5g1v0018100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLKSKKGWKSIVPLHLKGKSATRFSLFRKVNSASYGPGKTPVYLNVYDLTPMNGYVHWAGLGIYHSGVEVHGVEYAFGA HDYATSGVFEVEPRQCPGFKFRKSIFIGTTSLDSVQVREFMERQSASYNGDTYHLIVKNCNHFCKDICFKLTGKSIPKWV NRLARLGSICNCILPEALKISAVGHDPDCQPRDSEKRRLRNSFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSSWPSWEL RKSINRSLKER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 247 | 237 | 5.9E-140 | – | |
| PANTHER | 11 | 247 | 237 | 5.9E-140 | ||
| Gene3D | 37 | 184 | 148 | 2.6E-35 | ||
| ProSiteProfiles | 41 | 178 | 138 | 57.664 | – | |
| SMART | 41 | 179 | 139 | 2.4E-54 | ||
| Pfam | 42 | 176 | 135 | 2.5E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0018100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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