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LotjaGi5g1v0018500.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0018500
Transcript ID	LotjaGi5g1v0018500.1
Lotus japonicus genome version	Gifu v1.2
Description	Peroxisomal membrane protein 11A; TAIR: AT1G47750.1 peroxin 11A; Swiss-Prot: sp\|Q9FZF1\|PX11A_ARATH Peroxisomal membrane protein 11A; TrEMBL-Plants: tr\|A0A0L9TT59\|A0A0L9TT59_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0018500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:3567774..3570596) extracted from Lotus japonicus Gifu genome v1.2.

CTAAACAATCCACTTTTTTTCTCACATTTTTCGGGTGAATACTCATTTTTTGTCCGTGAAAATGTAAACGTCGAGCAAAT TAGTCTCCAGAAGAAGGAAATACCTCAATCACTTATTGTCCAAATGTCGATTAAGTTAGTTCCTATGGTAAAACATTATT CATGTAGTAGGGGCTAACTTGATAGAGATTCGATACAATGCGAGAGGTATTTCATTTTTTTAATGACTATATTGCTTGGC GCAAGGACAAAATTGAGCATTCAATCCATCTTTTTCTCTACTCCTGTCATCTCTTATCACATTTTTTTAGCGAGTCTCTG ATCACGTTCTCTATTCACACTTTATGGAGTAAACCAAACAAAACATTAGTGTTATGGTCGGCTCTAAAAGCTATGTAACC CGACGACACCGCGACAGACTCCACAAGTAATGCTATTAAGCAGACACTAGGCGGTTGGCCGAAACGACCTAGTCCAGGAA CATGCCACCCTGACGAGACTAACAAAGTGTCTGACCAGCCCGACAAAGGTTCGAGACAAATGCCTAAGTACGACAACACC AAACCAACCGTGCGCTCGGAAGCTTCACTTAAAGGGCTTCTCATTAGGCTCGAAGTAACATGTTAAATCCAGCATGTTCT ATAACGTTTTCACAACGTGACTTTGCTACTCATCATCTCTAAGTAGACTGCCATCAAGCAATTGCGAATTTGCCACAACC ACCGTCTCGGAATCTGCAATGGATTCAGAACCTCCAGCTCCGCCGCAGAACCCGAAGCCAACCCCACCACCACCGCCACC GAGTGCAACCGCCACCACAAAACCGAACGACAAGAGAGACTTTCTGAACCACGTGGAAGCCTACCTCGCCAAGCGAGACG GCGTCGACAAGCTTCTCAAGATCTCACGTTACACCACCAAGCTCCTCCTCGCCTCTTCCCCGAACCTCCTCCGTTCGGAC ACGAACCTCTCCCAACGCCTCAAGGCCTTCGAGTCCAGCGTCGGCGTCAGCCGCAAGGCCTTCAGGCTCGGGAAGTTCGT GCAGGATCTCAACGCGCTCCGAGCCTCCGATCCAAAACGCGACCTCGTGTTCTCCGTCATCGCCTACGGCGGCGAAGGCT TCTACTACTTCGTGGAGCAGTTCGTGTGGCTGGCGAAATCGGGGTTGATCGATCCGAAACATTCCCGAACGTTGGGGAAG ATTAGCGCCTGGGCGGAATTCGTTGGGTACTTCGGAAGCATCGCGTTGAAATTGAGGGATTTGAGGTTGATTATCGAGGA TGAAGCGTGCTTGCAATCGAGCGTTGAGATTGCGGGGTTGAGAGGGGTTGGGTGTGGAGAAGAAGAAGGGAAATTGGGGA AGTTGAGGGAGAAGAAACTGATGAAGCAGCTTTCAGTTGTTCAGGATTTGGCTGATGGATTGATGGCTTTGGATGATATA TTGGATGGGAAAGCACCGTTTTCGAAGCCGATTTTGCTTTCTTCTGCAGGGCTTTTGTCTGCTCTCATCAGCACTCACAA GAATTGGGTGTCTTGCTGAGTTTGAATCAGCTTCAGTTTTCGCGGAATCAATTCTGACACGTAGAAGCTACTCAGGGAAG CTTTTACTCAATTGATTTTGGCTCTAGAATCAATTTTAGAAGGATTGCAATCTGGTGCGTTAATTAGTTCCGATGAATCA TTTTTATTGTTTACCTTTCACACATGAAAGATGTAGGAAATATTCATAATAATATATATACACAGACCCCGAGTGAAGTT GCTTGGTTAGTTGGTTTATCTGCACTGATCCTTGAATAAAATGACCGGTTGACCGTTGATTCTATTTGTTCTTAAGGTTT GTTTTTGCAGAAATTTCTTTGTTTGGGTCTGTCATGCTGTGATTGAGGCATTTTTCAGGTTGCTAGATTTGCTTCATATT AGCAATTTAGCATCTGTATTTTGTTGTATTATATGGTCAATTTGGATTTCTGTTGATAGGTAACATGAATTACTAAATGA AATGATTAGAGGGATGGGCAGTTTATATGTTCAGAGGCATTATAACAAGTATGGCTTCCCAGTTCCCATTGATTTAACAA AACACAAAACTGAAATTTAAATAGAGAAAGAAAAAAAAAGGTTGAATTCCTATGAAACTTGATTTGGAATGGCTGTTAAA GTGGAAATGAATTTTACATGGTTACTTTTTCAGTTTTTCATGTGGACTGCACTATAGATTGTAATTTAAATCGTGTAATA ATGTTATGTTTCTTGTCTATTGAAGCATTTATCTTGAAGAGTTTTGTTTTAGAGCTTCTATGTAGTGTAAGCATGAGGAA AGTTTTCTTTAGTCATTCCTATTTCCTCTATCATCTCTCCATTAGCTACATTATTAAGCAAGACTGGTGTCCTAATCCAA CTTCTATCTCTCTTTCATATTGGGGAAGAGGGCTGCTACTGACTTGAGAATTTCCATCTTAATGCTCCTTTGGACATGTA TTACTTTCCTCAACACGTTGGTTTATTGCAACTCTTATTGGGTGATTATGGAAAATGGGATGTTTCTTTTTTGAGAGTAT CTGTTGTTCCATGAAAAGTAAAATAAAAAAAAAATGCCAAAACTATTTCTAAAGGAATTCAATTATGTTGGATTGTGTAT TTTAGTTTGTTTACAAAGGTTGTTTTGATGTTATTTATGGGGTTGAAATTGTATTGCTCTAGACAGTGAAAAGAAGATTA TATTACTATATTTTGTTCCTGCCACCTTTCAGGATATTATGTGCTTTTTCAGAACACATTTATTTGTGTGTTTGAATTTT CATTAAACTAATGTGAATCTACG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0018500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTCAGAACCTCCAGCTCCGCCGCAGAACCCGAAGCCAACCCCACCACCACCGCCACCGAGTGCAACCGCCACCAC AAAACCGAACGACAAGAGAGACTTTCTGAACCACGTGGAAGCCTACCTCGCCAAGCGAGACGGCGTCGACAAGCTTCTCA AGATCTCACGTTACACCACCAAGCTCCTCCTCGCCTCTTCCCCGAACCTCCTCCGTTCGGACACGAACCTCTCCCAACGC CTCAAGGCCTTCGAGTCCAGCGTCGGCGTCAGCCGCAAGGCCTTCAGGCTCGGGAAGTTCGTGCAGGATCTCAACGCGCT CCGAGCCTCCGATCCAAAACGCGACCTCGTGTTCTCCGTCATCGCCTACGGCGGCGAAGGCTTCTACTACTTCGTGGAGC AGTTCGTGTGGCTGGCGAAATCGGGGTTGATCGATCCGAAACATTCCCGAACGTTGGGGAAGATTAGCGCCTGGGCGGAA TTCGTTGGGTACTTCGGAAGCATCGCGTTGAAATTGAGGGATTTGAGGTTGATTATCGAGGATGAAGCGTGCTTGCAATC GAGCGTTGAGATTGCGGGGTTGAGAGGGGTTGGGTGTGGAGAAGAAGAAGGGAAATTGGGGAAGTTGAGGGAGAAGAAAC TGATGAAGCAGCTTTCAGTTGTTCAGGATTTGGCTGATGGATTGATGGCTTTGGATGATATATTGGATGGGAAAGCACCG TTTTCGAAGCCGATTTTGCTTTCTTCTGCAGGGCTTTTGTCTGCTCTCATCAGCACTCACAAGAATTGGGTGTCTTGCTG A

Download CDS Sequence

Protein sequence (LotjaGi5g1v0018500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSEPPAPPQNPKPTPPPPPPSATATTKPNDKRDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQR LKAFESSVGVSRKAFRLGKFVQDLNALRASDPKRDLVFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHSRTLGKISAWAE FVGYFGSIALKLRDLRLIIEDEACLQSSVEIAGLRGVGCGEEEGKLGKLREKKLMKQLSVVQDLADGLMALDDILDGKAP FSKPILLSSAGLLSALISTHKNWVSC

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	25	25	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	31	31	-	–
PANTHER	PTHR12652:SF10 View details on PTHR12652:SF10 Search for proteins/transripts with this domain View external data on PTHR12652:SF10	33	265	233	1.1E-60	–
PANTHER	PTHR12652 View details on PTHR12652 Search for proteins/transripts with this domain View external data on PTHR12652	33	265	233	1.1E-60	–
Pfam	PF05648 View details on PF05648 Search for proteins/transripts with this domain View external data on PF05648	36	263	228	1.9E-42	IPR008733 Show description in modal box View details on IPR008733 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005779 View details of GO:0005779 AmiGO InterPro QuickGO	Cellular component	Integral component of peroxisomal membrane	The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.	Subterm of View details of GO:0031231 View details of GO:0031301
GO:0016559 View details of GO:0016559 AmiGO InterPro QuickGO	Biological process	Peroxisome fission	The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments.	Subterm of View details of GO:0048285 Part of View details of GO:0007031

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0018500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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