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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0018700 |
| Transcript ID | LotjaGi5g1v0018700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase complex subunit SAP30; TAIR: AT1G19330.2 histone deacetylase complex subunit; Swiss-Prot: sp|O75446|SAP30_HUMAN Histone deacetylase complex subunit SAP30; TrEMBL-Plants: tr|A0A151RBL7|A0A151RBL7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0018700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3587605..3590411) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTCTCTCTGTTTATGCTCTGTCTCTCACTCACACCCAAACGTCACTTTCTCTCTCTTCTTTCTCTCTCCTCTATCT ACTTCATTTTCGTTTCTCTGAATTTCTCTTCTCACAATCAAGCAATGCAAATGCATGATCTCTTCTTTTTCTTCTTCTCT GCTTCTTCGATTTCTGATTAATAATTAGGGTTACTGTTACTACTATTTTTTCAATTTTGGGGGAAAATGCTGGAAGCAAC AATGGAAAGCTCTTCAGTCAATGGTGGTGGTGATCGATTCTCTCAGTTGCAGAGCTGTGGAGATAGCAGCGAAGAAGAGC TCTCCGTGCTCCCTCGTCACACCAAGGTGGTTGTCACCGGAAACAACCGCACCAAATCCGTACTCGTTGGTCTTCAGGGA GTTGTCAAGAAAGCCGTTGGCCTCGGTGGTTGGCATTGGCTGGTAACTTTCTTCACCAATTTTGAATAAGAAAATGGTTA TTATCTGAATCTAATTTTGGATTGTTAATGTGGGTTTCTTTCTGTTTTTGGAATTATAGCAAGTTGTTTATAGCAATTTC GGTATATTTTAATTTATTTAACTTTTTTTGTGTGGCTATTTTGTGATCCGTTTAATGACTAAAATCTTATATTTTTTGTT TAAAATATTAATGAAGACTTATCCAAATTAATTTTTTTTCTTCAAATGATAATCCTTTCATGTCTTATCCAAATCATTTT AGGGGCATTTACTAAATTTTGAAATTTCCATGTTCTGGGGTTATCCAAGTTGCAATTTGATTGCTTTGAATTGTATTTAC ACTAAGTATCTTACTTTATCTTTGGATCTGGGTCTGGGGTTTAAGGAGTTCCTAAAAAAAATCAGTTGTTGTTGTTTTTT GTTTTTAGTGATCTTGTCTTGGGTTGTGGGGTTAGTAATTCTTAAATGGGTTATTAATTTTTGTATGTTCAGTGATGTAT TTGTTTTGAACTGAGTAGTATTTTAACGTATTTTTGACAATTTTTCCTATTTTATTGGTCTTTGCTTGATGGTTTTTTCT CCAGCAGGTGTTAGTGTTTGATATCAGATTATCACCTCTTCGCTACATGCATGCTCTGATTATGAATCTTCTCTTTTTAT TCTAGATAAAATTATGAAATAAGGAGATGAGTTATTATGTGCTGAAATCAATAGTCCTTCATATCCTACTTTAATCTGAA TCAATGTTACTTTTAGACACATTTGGATTCTGAACAAGAACTCTATTGTTGGGTGTGGAGAGAATTTCAATTTTTCATCT ACAATTATGCTTGTTGTGCAGCATATATTTGGTTTTATTCCCTGGTTATTTGGGAAACCATTTGTTCTATCATGCATGAT GATTGCTTAATATTCTGCTTGTTACAAAAATGTGCAGGTTCTTACTAATGGTATTGAAGTGAAGCTGCAGAGGAATGCCC TTAGTGTGATTGAAGCACCCACCGGGAATGAGGAAGATGATGACCTTGAATTTGAAAATACGCAGTGGAATGGATCCGAT ATGGGTGGGTTACTGTTCTTTCTCTATGTTTCCAGTTTTTTTTTTCAACTTAATTTGAAAATTATGTGTTGATTTGTAAA GGTTGTTTAATTTGATACGTCTTATATTATCTGTCTTGCATGTTCAGTGGTACTAGAGTTATGGTTTATAGCTTGCATAA ATTTTTTTCATTTTATTTTCTCCTTCAATGTAACTATTTATTATTCCTGGCTTAATTCCTACTTGACCCTCAGTATTGAA GGTAGTGGATGAACTGTAACATTGTATTTTTGTGACTTTTTTTGCTGTGGTTTTCCATGTCTCTGTCTGTGAGTCTGGGA TGTTACATTGGATCCATTTATGCAATTGTTTCTTTGCCTTTTGCTTTTGACTATTTCTTTCAGTAGGCTCTATTGTGTTT CTTTTTTTGGCCCCACCCTCATTTCTAATTTTGTTTGTACTATCTTTCATTTGATTTCTCAGCATCTGATGACACACAAA AGTCCCACAAATCAAGGCACAGGACACATAGATCATTAGGATCATCTCACAAGACTACAAGCAGGTCCTTCTCTGCTGAT TCCCAGTCTAAAGGATCAATTTCTATGCCCCATGGATGGACGGTATATCATCTTCACTGTTTTTCCCCTTCAATAATTGA TTTTGCCACTCCAAAAATCAATTTGGTGATATTTCAACTATTCAAATTGTGCTTAAATGTTTTCTGTAGAAGGTTGACTT GAGCAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTAAACAAATTCCTGAACCTGTCTGGTT GCTTACTGTCTCCTGGGAGAGATTCTTGTGTTCGAAAGTTTCCAATTTTCTGACACCTAAAATGGGTGTGCAGGTGGATG CTGTCCCTAACCCATCGAAAGAGCAGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCCCAGGTATTGAAAAAGTTCATG ATTGCACTTGCATCCTTTTTTCGAACAGCATTTCATGTTTTGAAAAATCTTTCGCTTCTGGCAATGTATGTGTTTCGAGC CTGTCTCTGATAGCATATTTGGACTGGTGGTGGCACCCAATCCAAATTATGGTATATCTGGAAGCTTCTTTGCAGAAATG ATTATGAGGCTTTTTCCACCACAAAACCATACACACTATAAGCATTGAGATGATAGGAGACAAGTATTAATTATGTTTTT CCTTTACTTTTGAAGCAAATGGACGAGTTGCAGGTGATTATGGGATTTGTCCAAGCTGCTAAGAGGCTCAAGACTATGTG CAAATGA
CDS sequence (LotjaGi5g1v0018700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTGTCTCTCACTCACACCCAAACGGTTACTGTTACTACTATTTTTTCAATTTTGGGGGAAAATGCTGGAAGCAAC AATGGAAAGCTCTTCAGTCAATGGTGGTGGTGATCGATTCTCTCAGTTGCAGAGCTGTGGAGATAGCAGCGAAGAAGAGC TCTCCGTGCTCCCTCGTCACACCAAGGTGGTTGTCACCGGAAACAACCGCACCAAATCCGTACTCGTTGGTCTTCAGGGA GTTGTCAAGAAAGCCGTTGGCCTCGGTGGTTGGCATTGGCTGGTTCTTACTAATGGTATTGAAGTGAAGCTGCAGAGGAA TGCCCTTAGTGTGATTGAAGCACCCACCGGGAATGAGGAAGATGATGACCTTGAATTTGAAAATACGCAGTGGAATGGAT CCGATATGGCATCTGATGACACACAAAAGTCCCACAAATCAAGGCACAGGACACATAGATCATTAGGATCATCTCACAAG ACTACAAGCAGGTCCTTCTCTGCTGATTCCCAGTCTAAAGGATCAATTTCTATGCCCCATGGATGGACGAAGGTTGACTT GAGCAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGCTGTCCCTAACCCATCGAAAG AGCAGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCCCAGCAAATGGACGAGTTGCAGGTGATTATGGGATTTGTCCAA GCTGCTAAGAGGCTCAAGACTATGTGCAAATGA
Protein sequence (LotjaGi5g1v0018700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCLSLTPKRLLLLLFFQFWGKMLEATMESSSVNGGGDRFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQG VVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMASDDTQKSHKSRHRTHRSLGSSHK TTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQ AAKRLKTMCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 11 | 21 | 11 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 250 | 224 | - | – | |
| PANTHER | 31 | 249 | 219 | 6.2E-114 | ||
| PANTHER | 31 | 249 | 219 | 6.2E-114 | – | |
| MobiDBLite | 129 | 178 | 50 | - | – | |
| MobiDBLite | 158 | 178 | 21 | - | – | |
| Gene3D | 165 | 250 | 86 | 1.3E-16 | ||
| Pfam | 190 | 243 | 54 | 5.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0018700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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