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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0020400 |
| Transcript ID | LotjaGi5g1v0020400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein (DUF616); TAIR: AT5G42660.1 DNA-directed RNA polymerase subunit beta (DUF616); Swiss-Prot: sp|Q9VLL0|ACSF4_DROME Acyl-CoA synthetase family member 4 homolog; TrEMBL-Plants: tr|I1M8H0|I1M8H0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0020400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3788999..3792910) extracted from Lotus japonicus Gifu genome v1.2.
AAATACAGCAATGATTAAGCCCGTAGCTCTGAGAAGCAAAATCAGAGGCAATTTTGTGGTCGTTTTAGTTTGTCTGCATT GCCTGCAAATTTGATTTTAACAGCGATAAACCCATTTCCATTTGCTACTTCAATTCTCTCCTCTTCTCATTCCACTTTCC TCAATGTTCCACAACAACAATAGCCTCAGCGTCTCGATCCCCGTCTCCGACGACGAACCCGATGAACTGGGTCGGATGCG TGTGCGCGCGCGGCGGAAACGGAAGAAACTCACCCACCGTCGGTTCCTCCGGAAGCTTCTTGTCAGATACTGGATGCTAC TCATCATCATCCCCACCGCGTGTTTGCTCTTCTTCGAGGCCTCCAGAATCGCTCGGAAGCCTAGTTTCAATGTCAACTCC GATATACAAACACGCACGCCAGTTGATCGATCTAGTCCCCCATTGAGGAAGGAGACACACAGCAACCTCAATCGCCTTGA TCCTACTACCCATGTTGTTGCTGGTGTCAGAGAACGTGAGTCCTCATCAACCCTTTACTTTTTTCCCTCAAAGAGTGAGG TTCTATAATTTTCATTAGTTTTCTTAATTTTAGACTTTGATGGAGCTATGTTTTAAGATTTATTAGTGTAGGGTGTTTAA ATTCAAGAAGGGACATGTTATGTGTGAATGTGATTTAGGCTCACTTTGGATTAACTTCTAGATTATGATAGTTTTTTAAG TATTTGATTGATAACTAAAGAAAAAGACTTTCTAAGTTAGTTTATTGGTGTTTGTAGACAAGTTAGATGAACTAGTTTCT GAAGATGTTGAAATGGACATGCTGAGGTTTATGTTAACTTATTTGGGAAACTGTTATTTAAGAAGACTCGTAGTAATTGT AAGATTATTTGAATTGTTCTTTCCCTATGAGTGTTTGTTGGTTGGGAAATTGATTCAGATTAGCACTTGATTCTATCAGG TTGTTTGAAGCTCCTGCCACCTGAAAAACTTGATCAACTGGATATTCCGGTGGAAGAAGAATCTAGATTGCCTGTTGGTA AAGTTCTATACATGTCAGAGAGTGATCTGTCTATTCCGGGAGGGAATGCTACATTGTCTCAACTGCGTGCTGAAGACACA AGATTTAATTTATTTACTGGAAATCAAACGTTTGAGCAGAGAGATCGAAGTTTTGAGGTGATGAACTGCTTTCTAATATC TTTCAAAGTACCTGGATTTTGTTTGATTTTTCTTAAAGTAGAGCTGCTTTCTACTACTTGATATGCATGGCTGGATGTGG GTTATATAGGCTTTATTTCTTTATATAGGTGAAAGAAACAATGATGGTACATTGTGGGTTCTACAGTGAGAATGGAGGGT TTAAGATATCTGATGAAGATCGAAGTTACATGCAAGAATGCAAAGTTGCGGTATCTACTTGTGCGTTTGGTGGCGGTGAT GATCTCTATCAACCAATTGGAATGTCTGAGGCTTCGCTGAAGAAGGTTACTATGTTGTATAAGGTTTATTATTGATTTAT ATTAGAAGTCAGTAATCTTATATGCCAAATCTATTTAGTGTCATGCAGGTTTGCTATGTAGCATTCTGGGATGAAATCAC CCAAAAAGCGCAGGAATTAGTGGAGCGCAGAATTGGCGAAGATGGATTTATTGGAAAATGGCGTGTTGTTGTCGTCCGGG ATCTTCCTTTTGCTGATCAAAGGCTGAATGGTAAAATCCCCAAGGTATTAAATCTGTTTATAGCCATCTCCCCTCTTTCT CATTTGCTATATCTTGATAGTGCTTGAAGTGCATAATCTAGGCGCAGCTGCACTTTGTTCCATATCCTGCCCTATCTTTA CCCTGAGATTCTTTTGTTTTTTTATCCACTGCTATGTATTCACATATGTGGAGTGGTTGTTGTCTTAATTAACTTCTCCT TTAATCCTCACTAATAACTCCATCAATTGTGCATTTTGACACATGCTTTATTTATTAAGTATAAAACAAGTTATATGTCT AGGATGGTCTTTCATTTCTCTACTTCTAATTTTGGCTATTATCCTTTTATAGATCCTTCTTTTATTTGTTTCATTTTTCA ACCTTTGGGGACTTGGATATCTTTCAGATGTTAAGCCATCGTCTTTTTCCTCAAGCAAAATACTCTATTTGGGTAGACTC CAAGTCCCAATTTCGGAGGGATCCATTAGGTGTGCTAGAAGCACTCATTTGGCGCACAGATTCTATACTGGCCATATCAG AACATGGAGCTCGTAGTAGTGTCTATGATGAGTCCAAGGCTGTTGTCAAGAAAAACAAAGCCAAGCCGGAGGAAGTTGAA GTGCAACTGAATCAATACAGAAAAGATGGCTTGCCTGAAGACAAGAGATTTAATGGAAAGAAAGGTATGCAAAGACTTTA TTTTCATTAGCTAACTGTGATTTTAACATTTTTCTTCCTTCCTTCATATAAGAAAGACTGTTGTTCTATTTAAGACAATA TTTTTCCGTCATTTTTGTGACTGTTAGGGTCTCACATTGACTAAAAATATGGCTAAATGAACTCCTTATAAATGGTAGAA CAGTCCCCATCCCTGAGCTATTTTTCTGGTGGAGTTAGGCCTAACCCGAATACTAAGATGGTATCTAAACCTATCTTAGA TCTGTTTAATGGGTCAACCATAAATGGTCCCCCTGCAAATGTCCAGTCGTGCAAACCTCACGATGTAGATGTCCAACGAG GGTGTGTCAAGGTCCTACATTTGCTAGAGATATGGCTAAATAAGTCCTGATAATGGGTAGAGCAATTCTCATCACTGAGC TAGTTTTTTGTGTAAAGTTAATCCTAATCCGCATTTGGAAGCTCACTCCTTGGGTCAGGGCTTGTGTGCCTTTCTCCACC TCATTGGGTACGCTTTTTGTGCTCCCCTCAGGTTGTGGAAGTTGCTCGATTGTTAGCGCTCCTCACCCGAGGATCCCTAA CTTGTTTGCTTAGTAGCTCTAGAAAGTAAACCGGTAGCTCATCATTCTTTGTTGCCTCTGTCATTCCTGCTCCTCACCTG AGGATCAATCACTTGGAGTTACTTATAATGTCTATAGCTGCATGTCAATAGATGTCAGTCCTCTCTCTTTTACTTACACG GGATAGTTTTCCAACCTTTGCTATAATATTTTGAAAAATGTTTGATCAAACTTTTTCTGTGCAGCTCTATGTGAAGCCTC TGTTATCGTGAGGAAGCATACACCAATAACTAATCTATTGATGTGCACCTGGTTCAATGAGGTGGTTCGCTTCACTTCTA GGGATCAGCTCAGCTTCCCATATGTCTTGTGGCGTCTGAACGCATTCAAAAGCATCAATATGTTCCCTGTCTGCACCCGC AAGGATCTTGTCAATAGCATGGGCCATATCCGAAAGGCCAAACCACTGCAAAGCTGATTTAGTTAAATTGGTTGAAGAGA TGCTTACCTGCATTTACCTAACCATTATTATTCCATTAGTTTCATTAGCCAATATGAATCAGTCAATCAGGTATATGTGT TGTTTTTCTAACCCCACCCCATTTCTCTTAACCTGTGTACATGATAATTTGTATTTTGTTTACTGGGAGCTCTTGGATTA GATCATTCCAGAAAAGATCTAGTTGATGGAAGGGTCAAATCATACAAACAAGAGATTTTGCTTTTGATCTGTTTCAACAC ATAATTTTTTTTAATAAACTAATGTTTTCATAAAATTGTCAGATAGTTGTGCTCTTTATACTGTTTTAAATTCTTTGTAG TGTGTTAGGATATCAGTTGAATGTAACGTGAACGGACTTCCATCATAATTCATAAGCAGAGTTTTGTTCACAATTTTCCT TGAAGTGCATCCGTTTGCACTGTTTACCAGTTATTTTTGAAGTGGGATTTCATGGCTAGAATAATGATCAAG
CDS sequence (LotjaGi5g1v0020400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCACAACAACAATAGCCTCAGCGTCTCGATCCCCGTCTCCGACGACGAACCCGATGAACTGGGTCGGATGCGTGT GCGCGCGCGGCGGAAACGGAAGAAACTCACCCACCGTCGGTTCCTCCGGAAGCTTCTTGTCAGATACTGGATGCTACTCA TCATCATCCCCACCGCGTGTTTGCTCTTCTTCGAGGCCTCCAGAATCGCTCGGAAGCCTAGTTTCAATGTCAACTCCGAT ATACAAACACGCACGCCAGTTGATCGATCTAGTCCCCCATTGAGGAAGGAGACACACAGCAACCTCAATCGCCTTGATCC TACTACCCATGTTGTTGCTGGTGTCAGAGAACGTTGTTTGAAGCTCCTGCCACCTGAAAAACTTGATCAACTGGATATTC CGGTGGAAGAAGAATCTAGATTGCCTGTTGGTAAAGTTCTATACATGTCAGAGAGTGATCTGTCTATTCCGGGAGGGAAT GCTACATTGTCTCAACTGCGTGCTGAAGACACAAGATTTAATTTATTTACTGGAAATCAAACGTTTGAGCAGAGAGATCG AAGTTTTGAGGTGAAAGAAACAATGATGGTACATTGTGGGTTCTACAGTGAGAATGGAGGGTTTAAGATATCTGATGAAG ATCGAAGTTACATGCAAGAATGCAAAGTTGCGGTATCTACTTGTGCGTTTGGTGGCGGTGATGATCTCTATCAACCAATT GGAATGTCTGAGGCTTCGCTGAAGAAGGTTTGCTATGTAGCATTCTGGGATGAAATCACCCAAAAAGCGCAGGAATTAGT GGAGCGCAGAATTGGCGAAGATGGATTTATTGGAAAATGGCGTGTTGTTGTCGTCCGGGATCTTCCTTTTGCTGATCAAA GGCTGAATGGTAAAATCCCCAAGATGTTAAGCCATCGTCTTTTTCCTCAAGCAAAATACTCTATTTGGGTAGACTCCAAG TCCCAATTTCGGAGGGATCCATTAGGTGTGCTAGAAGCACTCATTTGGCGCACAGATTCTATACTGGCCATATCAGAACA TGGAGCTCGTAGTAGTGTCTATGATGAGTCCAAGGCTGTTGTCAAGAAAAACAAAGCCAAGCCGGAGGAAGTTGAAGTGC AACTGAATCAATACAGAAAAGATGGCTTGCCTGAAGACAAGAGATTTAATGGAAAGAAAGCTCTATGTGAAGCCTCTGTT ATCGTGAGGAAGCATACACCAATAACTAATCTATTGATGTGCACCTGGTTCAATGAGGTGGTTCGCTTCACTTCTAGGGA TCAGCTCAGCTTCCCATATGTCTTGTGGCGTCTGAACGCATTCAAAAGCATCAATATGTTCCCTGTCTGCACCCGCAAGG ATCTTGTCAATAGCATGGGCCATATCCGAAAGGCCAAACCACTGCAAAGCTGA
Protein sequence (LotjaGi5g1v0020400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHNNNSLSVSIPVSDDEPDELGRMRVRARRKRKKLTHRRFLRKLLVRYWMLLIIIPTACLLFFEASRIARKPSFNVNSD IQTRTPVDRSSPPLRKETHSNLNRLDPTTHVVAGVRERCLKLLPPEKLDQLDIPVEEESRLPVGKVLYMSESDLSIPGGN ATLSQLRAEDTRFNLFTGNQTFEQRDRSFEVKETMMVHCGFYSENGGFKISDEDRSYMQECKVAVSTCAFGGGDDLYQPI GMSEASLKKVCYVAFWDEITQKAQELVERRIGEDGFIGKWRVVVVRDLPFADQRLNGKIPKMLSHRLFPQAKYSIWVDSK SQFRRDPLGVLEALIWRTDSILAISEHGARSSVYDESKAVVKKNKAKPEEVEVQLNQYRKDGLPEDKRFNGKKALCEASV IVRKHTPITNLLMCTWFNEVVRFTSRDQLSFPYVLWRLNAFKSINMFPVCTRKDLVNSMGHIRKAKPLQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 44 | 44 | - | – | |
| PANTHER | 5 | 470 | 466 | 7.2E-249 | – | |
| PANTHER | 5 | 470 | 466 | 7.2E-249 | – | |
| Phobius | 45 | 64 | 20 | - | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Phobius | 65 | 470 | 406 | - | – | |
| MobiDBLite | 80 | 101 | 22 | - | – | |
| Pfam | 168 | 461 | 294 | 3.3E-117 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0020400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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