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LotjaGi5g1v0021700.2

Overview

Field Value
Gene ID LotjaGi5g1v0021700
Transcript ID LotjaGi5g1v0021700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Signal peptidase subunit family protein; TAIR: AT3G05230.1 Signal peptidase subunit; Swiss-Prot: sp|Q9MA96|SPC3A_ARATH Signal peptidase complex subunit 3A; TrEMBL-Plants: tr|I3S8P8|I3S8P8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0021700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:3923337..3924605) extracted from Lotus japonicus Gifu genome v1.2.

TCATTCTTGCAGGTCAGCATGACACTAAATATATCAGCTGATTTACAGTCTCTTTTCACGTGGAACACAAAACAGGTTCT TGACTTCATTTTTTCATTATAATCATTTCCCTCCCCCTTTTTGCTTCTGAAAAGAATGGATATTGTTAGCAGAAAGTAAA ATGTCAGGACTGGGTGGGGGAAGAATGGAAATTTATGATGTATCTGGTTTTCCATGTGTTGCATTATAATTTAATCTATG CTTCTTGTGTTCTCTTATATTTCCTTGTTATACTGTTTTACTTTGATTTCATCTTCTTCCAATGCTTCTATTTTTCTACA TTGAGAGGTTATTGCAGTATCTTTTTTACTTCCTCTTAGTGTTATATTTTTTCTAGTCTGTATCAGTTTCATTTTGTCAA ATATGTATTTCCATTATTGCCCTCTGATTTTTCTATGTTGTATATAGATTGTACTTCTATCGAAGTGTTAAAACTGTTTG ATGTTACATATGCACAAGTTCCTTAGTTTTAATCAGTTATTTTAAACAGCTTGAAAGCTAGAATTTTAGTGTTGTCTAGA GGCTTAGCTTGTTCCTCTCTTATAAGCTTGCAGGTTTTTGTATTTTTGGCTGCTGAATACGAAACTTCAAAGAATTCTTT GAATCAGGTATGATTTGATTACTTTAATTGTTTTTGCAAACCTACGTTGAAACACAAACATCTAAATTGTAAGCTTGCCT GCTCCTTTTAGTAGAGGAATGAATAAAAGGAAGCTATAACTATAGTGGGTTGGTGTATCTTGAATTTCATTTGTTGAGGC TGCAGCTTCTGAGTTTGTTTTCACTGTTTTACTATTTGTGTCACTTGGACAACTGTTCTATTGCATTTTATGCTGCATCA CTGCAATCTTTGGTATGTGTTGTGTCATATATGCTGCTTAGATTCTTGAGATGCCATTTTACAGATATCATTATGGGACG CTATCATTCCCTCGAAAGAGCGCGCGAAGTTTTGGATCCATACGTCAAATAAATACCGCTTTATTGATCAGGTATACAAC TCTCCTATGATGTTATATGACTAATATGAATTGCTTCAGGCTGCCTTAGACCTTAATTTTGCCATTTTTTCATGTCCAGG GAAGCAATTTGCGCAGTAAAGAGTTTAACTTGACTATGCACTGGCATGTTATGCCGAAAACTGGCAAAATGTCTGCAAAT AAAATAGTCATGCCTGGTTACCGATTGCCTGATGAATATATATAAAGCCTTCTTGTAATGTTAATGTTT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0021700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACACTAAATATATCAGCTGATTTACAGTCTCTTTTCACGTGGAACACAAAACAGGTTTTTGTATTTTTGGCTGCTGA ATACGAAACTTCAAAGAATTCTTTGAATCAGATATCATTATGGGACGCTATCATTCCCTCGAAAGAGCGCGCGAAGTTTT GGATCCATACGTCAAATAAATACCGCTTTATTGATCAGGGAAGCAATTTGCGCAGTAAAGAGTTTAACTTGACTATGCAC TGGCATGTTATGCCGAAAACTGGCAAAATGTCTGCAAATAAAATAGTCATGCCTGGTTACCGATTGCCTGATGAATATAT ATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0021700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTLNISADLQSLFTWNTKQVFVFLAAEYETSKNSLNQISLWDAIIPSKERAKFWIHTSNKYRFIDQGSNLRSKEFNLTMH WHVMPKTGKMSANKIVMPGYRLPDEYI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12804:SF8
1 106 106 2.1E-61 –
PIRSF
PIRSF016089
1 107 107 3.6E-34
IPR007653
PANTHER
PTHR12804
1 106 106 2.1E-61
IPR007653
Pfam
PF04573
2 104 103 2.7E-40
IPR007653

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005787
Cellular component Signal peptidase complex A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space.
Subterm of
Part of
GO:0006465
Biological process Signal peptide processing The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
Subterm of
GO:0008233
Molecular function Peptidase activity Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0021700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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