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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0022600 |
| Transcript ID | LotjaGi5g1v0022600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT4G33280.3 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8RYD1|REM16_ARATH B3 domain-containing protein REM16; TrEMBL-Plants: tr|I3SQ62|I3SQ62_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0022600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4033061..4036854) extracted from Lotus japonicus Gifu genome v1.2.
CCCAATAGAAGGTAAAAAAACCCTTGAATTGAAACCCCACTTTGCCTTGTGTTCTTTTGTCTACACAGACAACAAGAACA GCTTCTTCTCTGTTGTGTTCTGTGTTTCATCCTCGTAGTTTATGTTCTCTGTTTCCATTTCACATTTTGTGGTGGCTGTG TTGTTCCATTGAGAAAAACACAACAATGGCAGATCAAAACTGTGGTGGCTGTAGATCCTGGGTGGACGACATTTACTGGT CCCATTTCCAATTCCTTCACTTTGCTCAATTCCTCCGTGCTGATTATGAACAGAACCTTGTTAGTCCTTCTTTCTTTACC TCTTGTTGTGAATCAATGTATAAAAAGTAAAAACCTTGTAAAGTTTTGATTTTTAGGTTGGGTTTTAATTTTGTGTTTAC CCTTTCACACATTGCTTTATGCGTGTCTCACTGTCTCATGTGTGAAAGTTTTCATCTTTCTTTTGGGTTTTGAGTGCATG CATTTCAATTCATTACATGCCCACACTCTCTTGTGATGTTCCTTCTTTTCTTTTCATTCTGTTTCTTCATATTATTTTTA CTTGTCCTCTTATAATTTTTGTAGATAGATTTTTTTTACAACTCTTTTCCTTTCCTGTATATATAATTTTTTTCTGAGAA AGTTTTGTCCTTTATATCAGGTGTTATAGTTTTCATGGTTTTTTATTTTTTTTGTTATTATATATTCTGTAGACTAGACA TGCATGTTTTTAAACAATGTACCTTAGCCAAGGTAGATCCGGTAAGGCGGAGAACACAAATTTGAACCCGAGAAAGTCAT TTGTTGGAAGTGACTGTCATAGTTTTCCTGGACCGGCTAACATGCGGCAAGGACAAAAAAAAATTAATGGCTTAAAATTT TAAACCTGAACATTTCTCATGAACAGTGTAGCTGTTTCCATACCTTTTGTTTGCTTTTGTGATGTACTTTTGATTCTTAA AGGCCTGGTGTTTCTTGGGGCTATTTTTTTGTGTGCTCACATTGCAATGGAGGAAATATGCATCTACATTGTAGGTTCTA CCCATGCATGTACCCTGGTATGATCATGTTTTTTAGGCTCCAAAGGAAAAAAAGAAAGAAAGTGAATAACCAGTGCATGT GTGGAAACTCGTTCGGAAATTATGGTGAAGCCATAATCATGGTGGGCAGAAGCAAAAGCTAAAGGAAGTTGTTGCATCTG GCTAATTTTGGCTTCGCCGTGGGTTTCAAATGAGTTTCCAAATATGCACTATTTATCTGGCATACTTGAGATGGTTCATG GCTGCTTCACAATCAAATAGTTATGATTAGTCTTGGTATATTCTATATGCATGCTTCTTCTGCCCATTTGTATCTTATTC TCAAAGGTGATATCTGTATTTTGATTGCAGGCACTTCCCAAAACATTTTCTGATAATTTAAAGAAGAAGCTGCCGGAAAA TGTGACCCTTAAAGGTCCTGGTGGGGTTGTGTGGAATATAGGACTGACAACCAAGGAAGATACTTTGTACTTCAAGCACG GGTGGGAACAATTTGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGAATCAGTGTTT GATGTTCTGGTATTTGATGGGGAGAGCTTCTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGCGGGCATGCTACTGC TGAAAATGCTGGTGGTGGATGTTCTAGCAAGAGAAGAGATACTGATAACTCTGGTGAAGAAGTTAACACTCCTTCCAATG GGGGTGTTGAGTGTGTTTCTCCTGAGAAATCTGAGCACATTAACAGTATAGGAGTGCCATTTGCAGTTCCTATTGAAAAT CCTAATGAAAAGCCTTCAAATGCTGGTGTTGAATTTGCTTGCCCTGAGCAATTTATGGAGGACGTAGTCCCGGATCGAAA TGCTGTTCCCTCCCAAGCTGTTCCTTCCCAAACTGTTCCCTCCCAAACTGTTACCTCCCAAACTGTTCCTTCCCAAACTG TTACCTCCCAAACTGTTCCTTCCCAAACTGTTCCCTCTGAAACTGATCCCCCGCAAACTATTGGTAAAAGGATCAGGAAG CCTGTTTATGCTGCTACGCCCACCCCGGCTAAGAAGAGAGGAAGACCACCAAAAACATCTAGCTCTCACGAGAGATCCAT TGAATGGGTGACGGGTAACATTTTCAGTTATCAGTAATAATGGAAAGTAATACATCGTCTTTGTTATGGATATAGTTTTA TCTTGAAAAACTTAAATTTGGGGAATTTCCAACTTACAGACAAATACATGTCTAGTGATAGGAAAAAAATTGGAGCAGAA TGTGTAAATCTGTTGATATTCTAGCATTACTTTTTGGTGTCCTCCAACTAATTTTATCCAAATTGCAGAAGGAATTTGGT GGTACAATTAATATAGGAATACTTATTATAGTAGTAATCATAAAAGACACAATGAGCGTGTGTAGGGTGAGATTTTTTTT CTGGTAGAAGTGGGTTTGTTTAGATTTGATATGTGGACTGAACTATGCAACAATTATGGAATGATTTGTTTGTATGCCTG GAAGGACATTGATTTGATAATTTTTGGACACTATGGCCTGTATAGGCTTCTTGTGTGCATGTTTGAGCCTTAAGTGGTAC ACTTGGACTTGCCCAATAACAAAATTGATTAAAGAAATAAAATAGTAACACTTTTCTTGTGTAACATGTGCTTTGCAAGT AGTATTATTTCTTTGAATCAATGTTTGTATTACATGTTGATCCACCTTGGTTTGATCATATTAGTGGAACTTGAACCTGA ACCTGCTTCAGTGAGTAGAACTGGGACAAGTGAGTTATATACCTCAAACAGAAGGCCTGTCACAGAAAATGAGATTGAAA ATGCCCTCCACTTGGCCAGGGCAGCATGTACCGACTTCAGTTGGCATGTAGTTATGCGACCTACTCATGTATACAAGAGA TTCTTCGTGGTAAACTATTGCCTCCCAATTTTTGCTTTTTCAAGTTAATTTTAATCTAAATATTGCATTATGCTAAAAGC CTCCTTGCGACAATTTTAACCTGCTGCAGTTTTCTATTAATTCCATAGATTGCTATTAATTGTATTCTTCTTTGTGACCA GTCAATCCCTAACAAGTGGATATTGAACCATATTTCTCCGTCATCGCAAGATGTAATACTGCGCTCAGGGAACGGTGAAT GGGTTGCCAGATACAGCTACCATGCTATTCGCCACTCTGGAGGACTTACTAATGGGTGGAAGCATTTTGCCGTGGACAAT AACCTCGAAGAATTTGATGTTTGCGTGCTTACACCAGCTGGCAAGGTCAACAACACATTGATTGTAGACGTGAGCATTTT TCGAGTGGTTGAGGAGTTTATCCCTCTCACTGCAGTGAATTCTCCGGGGAAGAGGAGGGGTAGGAAGTCAGTAGCCAGTA TTGCTTAGACAGAAGTTTAGGAGGGCATTTCTGTTGTCTGAGTAAAGTGTCATTGTTGGAATGCAATATTGTAGAACTGT TTAGGGTCACAGACCAAGTTCCATGGTTTGTTTGTAGAGTCTGGATGTTGTCATGTTGGATTGTTTTAACTTTTCAAATC TTCTAAGAGGGTACTTAATTAACGACGTACATCTCGACCTTTTATTGTTAAAATTTGAAATGATGGGCTACATTTCCTCA TTTTGCAAAATTGCACTTTAACATAACTTTTTGAAAGATAGAATTCCAGGTAATGGCTTATTGCAAGTTTGGAAATTATT TATAATTGATTCTGAAGGTAAAATTAATTTTAGG
CDS sequence (LotjaGi5g1v0022600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATCAAAACTGTGGTGGCTGTAGATCCTGGGTGGACGACATTTACTGGTCCCATTTCCAATTCCTTCACTTTGC TCAATTCCTCCGTGCTGATTATGAACAGAACCTTGCACTTCCCAAAACATTTTCTGATAATTTAAAGAAGAAGCTGCCGG AAAATGTGACCCTTAAAGGTCCTGGTGGGGTTGTGTGGAATATAGGACTGACAACCAAGGAAGATACTTTGTACTTCAAG CACGGGTGGGAACAATTTGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGAATCAGT GTTTGATGTTCTGGTATTTGATGGGGAGAGCTTCTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGCGGGCATGCTA CTGCTGAAAATGCTGGTGGTGGATGTTCTAGCAAGAGAAGAGATACTGATAACTCTGGTGAAGAAGTTAACACTCCTTCC AATGGGGGTGTTGAGTGTGTTTCTCCTGAGAAATCTGAGCACATTAACAGTATAGGAGTGCCATTTGCAGTTCCTATTGA AAATCCTAATGAAAAGCCTTCAAATGCTGGTGTTGAATTTGCTTGCCCTGAGCAATTTATGGAGGACGTAGTCCCGGATC GAAATGCTGTTCCCTCCCAAGCTGTTCCTTCCCAAACTGTTCCCTCCCAAACTGTTACCTCCCAAACTGTTCCTTCCCAA ACTGTTACCTCCCAAACTGTTCCTTCCCAAACTGTTCCCTCTGAAACTGATCCCCCGCAAACTATTGGTAAAAGGATCAG GAAGCCTGTTTATGCTGCTACGCCCACCCCGGCTAAGAAGAGAGGAAGACCACCAAAAACATCTAGCTCTCACGAGAGAT CCATTGAATGGGTGACGGTGGAACTTGAACCTGAACCTGCTTCAGTGAGTAGAACTGGGACAAGTGAGTTATATACCTCA AACAGAAGGCCTGTCACAGAAAATGAGATTGAAAATGCCCTCCACTTGGCCAGGGCAGCATGTACCGACTTCAGTTGGCA TGTAGTTATGCGACCTACTCATGTATACAAGAGATTCTTCGTGTCAATCCCTAACAAGTGGATATTGAACCATATTTCTC CGTCATCGCAAGATGTAATACTGCGCTCAGGGAACGGTGAATGGGTTGCCAGATACAGCTACCATGCTATTCGCCACTCT GGAGGACTTACTAATGGGTGGAAGCATTTTGCCGTGGACAATAACCTCGAAGAATTTGATGTTTGCGTGCTTACACCAGC TGGCAAGGTCAACAACACATTGATTGTAGACGTGAGCATTTTTCGAGTGGTTGAGGAGTTTATCCCTCTCACTGCAGTGA ATTCTCCGGGGAAGAGGAGGGGTAGGAAGTCAGTAGCCAGTATTGCTTAG
Protein sequence (LotjaGi5g1v0022600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQNCGGCRSWVDDIYWSHFQFLHFAQFLRADYEQNLALPKTFSDNLKKKLPENVTLKGPGGVVWNIGLTTKEDTLYFK HGWEQFVKDHSLKENDFLVFKYNGESVFDVLVFDGESFCEKAGSYFVRKCGHATAENAGGGCSSKRRDTDNSGEEVNTPS NGGVECVSPEKSEHINSIGVPFAVPIENPNEKPSNAGVEFACPEQFMEDVVPDRNAVPSQAVPSQTVPSQTVTSQTVPSQ TVTSQTVPSQTVPSETDPPQTIGKRIRKPVYAATPTPAKKRGRPPKTSSSHERSIEWVTVELEPEPASVSRTGTSELYTS NRRPVTENEIENALHLARAACTDFSWHVVMRPTHVYKRFFVSIPNKWILNHISPSSQDVILRSGNGEWVARYSYHAIRHS GGLTNGWKHFAVDNNLEEFDVCVLTPAGKVNNTLIVDVSIFRVVEEFIPLTAVNSPGKRRGRKSVASIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 457 | 454 | 2.5E-148 | – | |
| PANTHER | 4 | 457 | 454 | 2.5E-148 | – | |
| Gene3D | 18 | 119 | 102 | 1.2E-27 | ||
| SUPERFAMILY | 21 | 114 | 94 | 1.61E-21 | ||
| ProSiteProfiles | 23 | 116 | 94 | 15.806 | ||
| SMART | 26 | 116 | 91 | 2.7E-16 | ||
| Pfam | 36 | 112 | 77 | 1.2E-15 | ||
| CDD | 38 | 114 | 77 | 1.69648E-20 | ||
| MobiDBLite | 136 | 170 | 35 | - | – | |
| MobiDBLite | 217 | 294 | 78 | - | – | |
| MobiDBLite | 218 | 258 | 41 | - | – | |
| Gene3D | 325 | 446 | 122 | 2.8E-22 | ||
| SUPERFAMILY | 345 | 435 | 91 | 8.63E-14 | ||
| ProSiteProfiles | 346 | 444 | 99 | 9.361 | ||
| SMART | 346 | 444 | 99 | 1.7E-6 | ||
| Pfam | 347 | 437 | 91 | 7.8E-11 | ||
| CDD | 349 | 442 | 94 | 9.42781E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0022600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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