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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0023800 |
| Transcript ID | LotjaGi5g1v0023800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor, putative (Protein of unknown function, DUF547); TAIR: AT5G42690.2 transcription factor, putative (Protein of unknown function, DUF547); Swiss-Prot: sp|Q9FMP8|RGAP6_ARATH Rho GTPase-activating protein 6; TrEMBL-Plants: tr|A0A0R0FI12|A0A0R0FI12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0023800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4180322..4183903) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGCAGAGAAGCTTGAGAAGTGCAAGTAAAGGTGGAAAAGCCTCAAGCAAGGAAAGAAAATTGGCTTTGCAACAAGA TGTATGCTATTGACACTGTTTCTAGTCCATCTTTTTATTTGGGTTTCAACTTTATTTTTGTCACATTTATCATGAAATCA ACTTCTCTTTCTTCATAATCAATTTTGGAACTCAGAAGCTTCTCTCCAAAATTGATTCTGGCTTTAGAATCAATTGTAAA AAGATTTCAAACATGTCGGCGACTGAATTTGAATTCTGTGACTCTTAGGTGGATAGGTTGAAGAAGAAGTTGAGGCATGA GGAGAACATCCACAGGGCATTGGAGAGGGCTTTCAATAGACCTTTGGGAGCTCTGCCACGTCTTCCTCCTTATCTCCCTC CCTATGTCAGTATATGAACTTCTCTCTCTTTGTTGCTCAGTCATTTTCTCAAATAGTACTTCTGTCTGCTGCTAAGTTAG AAAGGAAGAGATTGGAAAACAATTTTGACTTGTTGAATTCTAATGTTGAAAAAATTGTAGACACTAGCACTTCTTGCTGA AGTGGCAGTTCTGGAAGAGGAAGTTGTTAGGCTTGAGGAACAGGTTGTGCATTACAGACAGGACTTGTACCAAGAAGCTG TCTACATGTCATCTTCTAAGAGGAAAATGGAGCATTTACCTCCACCAAACAGTTCAAACTCAATAATGGACAGTCCCAAA TTGGATAAATTGAAGTCTCCTTCCCAAACAGCTGGTAGTCCAGCAACTAGCCACGCCACAACACTCCCTGGTGAGCAACT CATCATTATGTTTAACTGGTTCAAGTTGAATGGGTCAAGAATTGGATCCACTTGCCACAAAACAATAGTTTCTCCTGCAT TAAACATAACCAATTCTTAGAATTTACAACTGAATTTTATAACATTACCCTATAAAAGTCACTATCTTCATTGAAGTATC AAAACATAAATCACATCATTTTAAATCATGTTTTCCATATGGAACTTTATTTAGTAGAATCATTTCTGTTAACGCTAATG TAAACATACAATACAATTAGTGTCCAAAAGAATGTAATCCTTCTCTTATGTCATGTGCTTGTTGTTAGGCTTGTCAGAGA ATAGACAAGGAAAGGAGAACCAATCATGTACAAATTCTTCCAAGACTAAGCAGCAATCCTCCAAGCAAATGAACAAAACG CCAATTAAAAAACTTAATATTGATAATAAAGTACTCCAGAAAAAGTGCAATCCTCCAAAAATGAAGGTATGTCATGTGAA CTAATTTTCATTTGTTTGATAGTGCTACTAGTTGAAAACTGAGGAAAATTCTAAGTCAATAGTTGTGATCTTTCCACTGT GCAGCAAGAACCAAAGGTGAATAACCAGCAAATAGCAGAATTGAGGCATCCTAGTCCAACACACAAAATTTCACCAGAAG CTGAATGCCCAAATATAATATCTGAAAATATTCTGAAGTGCTTATCAAGCATTCTCTTGAGAATGAGTGCTGTGAAGAAT ACAGGTTCTGCAGGTGACATATCACCCTTATGGGCGACGAAACCTCGAACATGTGCTGAAGAAACAGAGTTTTGGGATCC CTATGGTATCTGCTTGGAATGTGGAAAGAGGGATATTGGTCCATACAAACAACTATGTGCAATTGATGCTAAATCTTTCA ATCCAAAACGAACTACAAATACTTTGTTTTTACTACATCGGTTAAAGTATGTCATATTCTATTCAAATTGGATTGCTGAT TTTTTTCCATGACACTAATTTGTTGTGCTTTGGGTGAATTACAAGTTTTAGTTTTCTGATTTTGCGAAATTTGCAGAATT CTTTTTAGGAAACTAGCCTCTGTCAACTTGAAGAACCTCAACCATCAGGAGAAGCTTGCGTTCTGGATCAACACTTATAA CTCGTGTATGATGAATGTATGTATGTTATGTGTATTAGAATAACATTTAGTATGTGCATGTTTTGATACACAATGGAAAA CCACGGTGGACAGCCACAATTGCCAAAATCAAGGTGCCCAACCACAAAAGTTAAGGGAAGTTGCTTCTGTCCACCGAGAT TTTGGTTCACCGTGGTTTTTCACTTTGTATTAAAACATGCACTATAATATAGTCTGGATCTAAAAGTGTGTTTTATTATC CTATGATTTATACGATCAGTTTTAGCTTATCTCAAGTGATGCATTTAATTTCTTCTCAAACCATTTAAAGTTCCACTTTG TTTTAGGCATTCATAGAGAATGGCATACCAGAGAGTCCTGAATTGGCCGTTGCGCTGATGCGGAAGGTATAGAATGGTGT CTTATTGTGATTGTTCTTCTGGTTTAGTATAACATAGCAAGGTGTGTTCAACAACTTGTCGTTTTCTTGTTACTCAGGCA ACAATAAATGTTGGTGGACACATGCTAAGTGCAACAACCATAGAGCATTTCATTTTAAGGCTTCCTTATCACAGCAAATT TGTAAGTCTTGTCCATTTAAACTCTAGCATTTCTATGGATGAGAATAGAGCTAACCACTTAATTCTGAACAGACGTTTTC CAAGGGAGTGAAAAATCATGTAACGATGGCAAGAAGCATATATGGACTGGAACTGTCAGAACCCCTTGTGACATTTGCTC TCTCTTGTGGAACTTGGTCCTCTCCTGCTGTAAGTTGATGAGTAATTCACACAGAGTTTTGTCATCTTCCATAACCCCCG CAACTAAGGCACTCACATTCATGATTTGCATTTTGTCTCATAGCATCATTAAACACCAATAACAAGAAAAGTCTTATCCC ACTAGGTGAGGTCCACTATATAGATCACTGATCCATATTAAGTGCCTGTTTGGATTAGCGTCAAGTGAAGTGAAGTGATT TGTGCTTGGATACATTTATGCAAAAGTGGGTTTTGTTGGGTAATATTGTGAAATTCAGTTGTAAAATCTCAATTGATTAG GTTTAATGCAGAAGCTACACTCTCTAGCTTCTACCAGAATTGATTTTGAGTCTGAAATCAATTCTCCAAAATGATTCTCA AACATCTATATTTTCATCCATAATGGATTTTACTCTACCAGAATTGATTCTAGGATTTCCACTCTAAAGATATCAGCTAG TTTTTCGTTGGCTGCTTAACACAACCTTCCTCCCATACCCGAGCTTAGGACCAGCTATGCAGCATAAGCGGAGTTCATGG CATCATTAAACAAGATTTGAAAATTCTATCCCTCTTTTTATATAACTATTAATGGCTTTATCATGACCTATGCCAAATGC AGGTGAGAGTTTACACAGCATCCCAAGTTGAGAATGAACTTGAAGTGGCCAAAAGAGAGTACTTGCAGGCAGCGGTTGGA ATTTCAACATCGAGATTCGCTATCCCGAAGCTGCTGGATTGGTATTTACTGAACTTCGCAAAAGACTTGGAATCATTGTT GGATTGGATCTGCCTCCAGTTACCAAGTGAACTAGGGAAAGAAGCCATTAATTTCCTTGACAAGAGAAAAACTGAGCCCC TCTCACAATTTGTACAAATTATGCCATATGAGTTCAGCTTCAGATACTTGATAAGCATATAG
CDS sequence (LotjaGi5g1v0023800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGAGAAGCTTGAGAAGTGCAAGTAAAGGTGGAAAAGCCTCAAGCAAGGAAAGAAAATTGGCTTTGCAACAAGA TGTGGATAGGTTGAAGAAGAAGTTGAGGCATGAGGAGAACATCCACAGGGCATTGGAGAGGGCTTTCAATAGACCTTTGG GAGCTCTGCCACGTCTTCCTCCTTATCTCCCTCCCTATACACTAGCACTTCTTGCTGAAGTGGCAGTTCTGGAAGAGGAA GTTGTTAGGCTTGAGGAACAGGTTGTGCATTACAGACAGGACTTGTACCAAGAAGCTGTCTACATGTCATCTTCTAAGAG GAAAATGGAGCATTTACCTCCACCAAACAGTTCAAACTCAATAATGGACAGTCCCAAATTGGATAAATTGAAGTCTCCTT CCCAAACAGCTGGTAGTCCAGCAACTAGCCACGCCACAACACTCCCTGGCTTGTCAGAGAATAGACAAGGAAAGGAGAAC CAATCATGTACAAATTCTTCCAAGACTAAGCAGCAATCCTCCAAGCAAATGAACAAAACGCCAATTAAAAAACTTAATAT TGATAATAAAGTACTCCAGAAAAAGTGCAATCCTCCAAAAATGAAGCAAGAACCAAAGGTGAATAACCAGCAAATAGCAG AATTGAGGCATCCTAGTCCAACACACAAAATTTCACCAGAAGCTGAATGCCCAAATATAATATCTGAAAATATTCTGAAG TGCTTATCAAGCATTCTCTTGAGAATGAGTGCTGTGAAGAATACAGGTTCTGCAGGTGACATATCACCCTTATGGGCGAC GAAACCTCGAACATGTGCTGAAGAAACAGAGTTTTGGGATCCCTATGGTATCTGCTTGGAATGTGGAAAGAGGGATATTG GTCCATACAAACAACTATGTGCAATTGATGCTAAATCTTTCAATCCAAAACGAACTACAAATACTTTGTTTTTACTACAT CGGTTAAAAATTCTTTTTAGGAAACTAGCCTCTGTCAACTTGAAGAACCTCAACCATCAGGAGAAGCTTGCGTTCTGGAT CAACACTTATAACTCGTGTATGATGAATGCATTCATAGAGAATGGCATACCAGAGAGTCCTGAATTGGCCGTTGCGCTGA TGCGGAAGGCAACAATAAATGTTGGTGGACACATGCTAAGTGCAACAACCATAGAGCATTTCATTTTAAGGCTTCCTTAT CACAGCAAATTTACGTTTTCCAAGGGAGTGAAAAATCATGTAACGATGGCAAGAAGCATATATGGACTGGAACTGTCAGA ACCCCTTGTGACATTTGCTCTCTCTTGTGGAACTTGGTCCTCTCCTGCTGTGAGAGTTTACACAGCATCCCAAGTTGAGA ATGAACTTGAAGTGGCCAAAAGAGAGTACTTGCAGGCAGCGGTTGGAATTTCAACATCGAGATTCGCTATCCCGAAGCTG CTGGATTGGTATTTACTGAACTTCGCAAAAGACTTGGAATCATTGTTGGATTGGATCTGCCTCCAGTTACCAAGTGAACT AGGGAAAGAAGCCATTAATTTCCTTGACAAGAGAAAAACTGAGCCCCTCTCACAATTTGTACAAATTATGCCATATGAGT TCAGCTTCAGATACTTGATAAGCATATAG
Protein sequence (LotjaGi5g1v0023800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQRSLRSASKGGKASSKERKLALQQDVDRLKKKLRHEENIHRALERAFNRPLGALPRLPPYLPPYTLALLAEVAVLEEE VVRLEEQVVHYRQDLYQEAVYMSSSKRKMEHLPPPNSSNSIMDSPKLDKLKSPSQTAGSPATSHATTLPGLSENRQGKEN QSCTNSSKTKQQSSKQMNKTPIKKLNIDNKVLQKKCNPPKMKQEPKVNNQQIAELRHPSPTHKISPEAECPNIISENILK CLSSILLRMSAVKNTGSAGDISPLWATKPRTCAEETEFWDPYGICLECGKRDIGPYKQLCAIDAKSFNPKRTTNTLFLLH RLKILFRKLASVNLKNLNHQEKLAFWINTYNSCMMNAFIENGIPESPELAVALMRKATINVGGHMLSATTIEHFILRLPY HSKFTFSKGVKNHVTMARSIYGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEVAKREYLQAAVGISTSRFAIPKL LDWYLLNFAKDLESLLDWICLQLPSELGKEAINFLDKRKTEPLSQFVQIMPYEFSFRYLISI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 541 | 540 | 0.0 | – | |
| PANTHER | 2 | 541 | 540 | 0.0 | – | |
| Coils | 14 | 48 | 35 | - | – | |
| Pfam | 17 | 98 | 82 | 5.3E-21 | ||
| Coils | 67 | 94 | 28 | - | – | |
| MobiDBLite | 106 | 187 | 82 | - | – | |
| MobiDBLite | 110 | 183 | 74 | - | – | |
| Pfam | 335 | 464 | 130 | 3.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0023800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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