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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0024200 |
| Transcript ID | LotjaGi5g1v0024200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G47490.1 RNA-binding protein 47C; Swiss-Prot: sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C; TrEMBL-Plants: tr|V7CRK3|V7CRK3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0024200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4258750..4264492) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTCCCATCCCAGCAGCAGCATTAAGAAACAAAAAATGAATGACGTGAGGTGATTGATCTATATAGTATATAGTTCA TTGACAAATCTCAAAACAAAACAAAAATAGCCCAAAATCGAAAAAAATAGCCCAAAAAAGAAAAAAAGCAGAAAGTTAAC AGAGGAAAAAAAAACTATCCAGAGATGGAAACAATCAAAGGAACGAAAACCTGGCCTGGCGGCGGATCCAGTTACAGAAA CAAACACTAGTGTCCTGCAAATTGCATATCCCTCAGATCCAACGCTCAGTATCAAATTGAATCATTTAATCCAACGGTCA AAACAACCACCGCGTTTTCGAAGAATCCTCCATCATCATCATCATCTTCTTATATACCCTTTCTCCTTGCCGCGCCTCTT CCTTTCTTTCTCTCTCTTCCTCCTCCAGATTCAGCTTTCTCTCTCTAGAAAACCCCAACTTCGATTCCGTTATTCGAATC TACGGTGTTCATTTATTGAACAGAGAGAGAAAAGGGTGAATTTAATTAAAGATGCAACAATCCAACGGCTCTGATTCGTC GACGGAACCGAACAACAAGCAGCGGTCAGCGGCGGTGGCGGTGCCGCAGCAGTGGGTGCCGATGCAGTATCCGGCTATGG TAATGCCGCACCACATGTTACCGCCGCCGCCTCAACATTACCCCCCGCCGCCGCCGCCTTACGTGCCTTACCATCACCAC CACCACCAGTTCGCGCCGCCACATCAGCAGCATCACCATGGATCCAACAATAACATCGAGAACAAAACCGTTTGGGTTGG AGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGGTTCTTTTCTTTCTTTCTT TAATTCTATTTTTTACAGTTCAAGTGTTAAGAGGAAAATCATTTTCATAATGTATCGTATAAGCTTATACTATCATACTT AATACGGACCACGGCGTGCCAAACCAGCCATAACTGTCTTTAAAGTTGCTGTGCAGTTTATTTGAGGGAAGAAAATGTGG ATTTATTTTTTGAGAACTAAGCAAGGTTTTGTTTAGCTGTAATTGGAAAGTTGCTGTGCAGTTTATTTGGTATAAGTTAC GTGGTTTTTATGATTGGTGTTTGAGTTTGTGTTTACATTGTAATAAAAATGTGCATGGGGTTGTTTACTTACCTTTAGTG TTAAATAACCACATTTTAGTTATATCAGTGTATAATTAACATAATCATGTTAAAAAAATTACATCCTTTAAATTTATGTT ACAATGAGGTTGTTTAATCTTTTAGGGTTAGACAAGCTTTTGATTTGAAGTGTAAATTGGGAAGAGTGGTTATCACTATT CAACATTCATGGGATATATATTTATTATATGTATTGTTTTAAATTCAATCCAAACACATGTATAATAATTTACGGTGTGT GTTTGGTTTCGCATATGACGAGTAGCCTATTTTGGTGAAAAGAATACTCACATTAGCTTATTTCATACGCGATTCTCTTT CGTTATGTGATTGTGAGAAAATTTTCCAAACACGACTGACGGCTAATAGTGTCTAAACATGTATTTATCGGAGATTATTC CAATTTAGCAATGAAATGTCAAAGGAACACAATTAAATGTGAAAATAAATTCATATTGGAAATTGGAAAGAGAAATATGG TGCCAACTTTAACCTTTCACTTTAAATTGTGATAAATAAAGTTACTCTATATCTTAAACAACCAACTATACAAACACCCA CATAACCTCATTTTTCTTTTAATCTCTCTCTTCCTATCATATCACATCTATTACTTATCTCTCTTATTTTCCTATCTTTC TCATTTTAATTTGCGTTTAACATCCAAGTGGGGAGTCTATAAAACATTAAAGTTGCAGCTGGAAATGATTTAACTTTTCA ACCCTAAGTAAATGAGCTTTGTATGCATGTGTGTATCACATTGTGTTTCAAACGTTATACATGGGGAGAAAATGTTATAC TAAGAGGTATGCTTAAATTACGGCTGCGTTTCCTAATTGCGGACAGTTGCGGGTATATGCGGCCGTAATTGCGGTCGTGA TGCCAATGGCATGTCTATGGGGCCTTCATTTGATCTATGTTTAAGAAAATTAATGTGAACTCTTTGGCATTATGTGTCTG TGTGTACATTTCTGAACTCTTTGGTGTGATAATATTGTTTCAGAGAAGTTCTACTTCTCTGCCACTCTTATTTATTGAAA ATAAGCCTGCATTTTGGGAAATAAATTTGTTATGACAGAAGATGTTCCCTGTGCCTTCTCATATTGCTTCAGTCATGCTT CTGACCATTATATTTTTTTGCAGATTTCCTCCATCAAAGTTATTCGCAATAAGCAGACTGGTTTATCAGAGGGTTATGGA TTTGTGGAGTTCTATTCACACGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAGTCTTGATGCCCAATACAGACCA ACCTTTCCGTCTGAACTGGGCAACATTTAGCACTGGGGAGAAGACTTCAGATAATGTTTCTGATCTTTCAATTTTCGTAG GAGATTTAGCTGCAGATGTTACGGATAGTTTGTTACATGAAACATTTGCTAGTGTATACCCTTCAGTCAAAGCCGCAAAA GTTGTTTTTGATGCCAATACTGGCCGTTCGAAAGGCTATGGTTTCGTCAGGTTTGGCGATGATAATGAGAGATCCCAGGC TATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGACCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTC ATCAACAAGGTATGCCAAATCACATTACTTGCTTCTGATGTGTGAAATTTTACTTTCAAGAAAAATAAAACTACATTTTA CATTCCATTCAAAGAGAAAGCATCTATCCACCATTTTTACCTCAGATTCCATTTGTTCTTCTGCCTCACAAGCTGTTACT AATGAACTTTAAGGACTACGTTTCTTGCCTGAACAAACAAGAATCACAGTCTAATGGCTTAAATTTTGGTGTCAATTTAA AAGAGTGCTATTTTCATGTCTTTGTAGATGAATAAATTCTTTGAAATGACAATTATTATGTCTTTTTCCCAGCCAAAAGA AAGACAATAATCATATGGTGAACTGAATGCAAATGAACATTGAATTTGTTTGCTGATTTCATTGAATAGGAGCATGCATA GTTGCAAAATCATCTGATTTATTAATTGCTTTAAATCATTCGACGCATGCAGCATGCTCACGTGACAATTTCGTATATTG TTGTGTGGCATGATTTTATTCTTGGTATCTATATCATGGAACTTCTCGAATTGATTTATTTGTTTTTGAAGTATCTGTAC TAACTCTGTTTTGATTTTCTCTGTTTCCTTGTTTAGGAGGCCAGTCAAATGGCACGTCCAGCCAACCTGAATCAGATTCC ACAAATACAACTGTGAGTTTTTCAGCTTATTTCATTAAATTTTACATTTTAGGGATTTGTCATTTAATACAATTGTGAGT CATTATAGATATTTGTTGGAGGACTCGACCCTAATGTTACAGAAGAAGATCTTAGGCAGCCATTCTCCCAGTACGGTGAG ATAGTCTCTGTTAAGATACCTGTGGGGAAAGGGTGTGGTTTTGTCCAGTTTGCAAACAGGTTAAGTCCTTGCCTTCTCAA GTTTTTTCATAGTAACAGATAAAATGCTTTTGAAAGATAACATGTTCTTGAATCTCTTCATTGATGTAATCACTACAATA TCATTTGAACAACTTTTCCAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACAATTGGAAAGCAAACAG TTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGGCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCACTTTTGCAATCCCACATTCTCATTATTATTGCATTAGGTCTCATGATGTTGTAATGAAACAACTATCCCAAAAAGGG TAAAGACACATAAACATTTTTATTTTACACTTCTGGCATGTCCCCTCACACAAGCGCCCATTGGACTTGAGGCAATGACA ATGAACATGTCCACCTAACTTGTGCTGAAATTCAATTATAATGCGTGCAAAAAGAATGCAACTCTAGATCGCTCTGTTAT AGAGACTCCGATATCATGTTATGAACCAACCATGCCAGAAAGTCAAGCTGTTAGGTGAAGACACATGAAACAACTTTGTT TTTGAACAATATTTTAGGTCCCTAACTGCTCACATAAACTAAGTCTGAGTTCACTGCAATCTTTGTAAAGGAAAATTGAA GCAACGTTTTTCTGAATTTTCTTTTAAATCAATAGAAAAAGTAGTTTTTTTCATCTGATCTCTCAAAAATGCTTTGTAAG TGCAGTCTTTCGTGTAATTGCATTGTGTAATTCTCTTTCGATCGATATACCTTTTGATAGCAGTTCTTTGTTCTTTTTGG TTGACTCTTTCGATAGCAGATTAGAATGGATTTCGGCAGTCCCTGGGGAGGGGCATATTATGGGGCACCAGTTTATGATG GCTATGGATATGCTTTGCCGCCACCTCATGATCCAAGAATATATGCTGCTGCTTATGGAGCGTACCCCATTTACGGAGGC CACCAACAGCAAGTAAGCTGATTGAAGTGCACGTCAGGAGTAGTTCTCACAACAGGTCACAACAGCATCACGCTTGAATG AGAAAATTAACTTCTCTTCCATGTAACTTGCTTGATCTGTTGATTTCTTAAGAATCCCTCCTAATTGTGGAGTGGAGTTG AATTTTGATAAGCTGAGCTAGCACGGTAGGGTTTCAATTAATAATTTGTTTAGACTTGTAGGAGTGATGATGACTAATGA GGAATTTGAACTTAATTATCAGAATAATTATGTGTGATTGTGTGCTTGCTTGCATGTCATTTGTTTCCAGCTGTTGACAT TGTTTGCCTTTTTTTTCCAAAGCTTTTAAGGGTCATTTTATATCTCTCAATCACCAATAGTTTTATTGCATGTCCCTATG GTGTTGTTCAAAAGCGATTATAGAATTCAAGTTCCTCTTATTTAGGTTTGGGATCTCATTCATTTTGATGAGTTCTGTGA ATCCTATATTTCTTAGGTTACTTTACATTATGCGTGTTTCCGCATTCAAGGTTGAATTAGAAATCTAGTTCAACTTGGCT AAAATAATCGGTTGCAGTTGCAGAGAAGGGTCTCTGTTTCTTACTCTCTCAGTCTTTAGTTTGGATCGACTTATTTTTCC TTTTTGTGAAGGAATTAGCGCTATATAACTCTTTGTAGTTTGCACATAGTTCATTTTCAAATAAATTGACACCTCTACCA CCAGACCAGCTGATAGAAATGCACACATTTATTTATGAGGTGAATCATGATTAGTTCAACATATCATAAGCATAAGATTA TTTTTATTTTTATTTTAGATGCATGTTCTTATGTAAATTTGTACCTGAATTTCTTGCTCAACATTGAAAAGGATATAAAC TGCGCTTAGGAGCCATTTTATTGTTCTATTTTCATAAAAAAATAAATCATTACATGTGAAAATTTCAGGGATAAATTTTT ATATGAAACTCATCTATCACATTTGCGCATCAATTTTAGCATATGCTAAATAAACTCAAGATTTTAGTTTAGGAGGAAGT TCTCCACGAAGAAAAGAAGTGATCATGGTTAGTGCTCTCTTTGGTTGGGAACTTGGAACCATG
CDS sequence (LotjaGi5g1v0024200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACAATCCAACGGCTCTGATTCGTCGACGGAACCGAACAACAAGCAGCGGTCAGCGGCGGTGGCGGTGCCGCAGCA GTGGGTGCCGATGCAGTATCCGGCTATGGTAATGCCGCACCACATGTTACCGCCGCCGCCTCAACATTACCCCCCGCCGC CGCCGCCTTACGTGCCTTACCATCACCACCACCACCAGTTCGCGCCGCCACATCAGCAGCATCACCATGGATCCAACAAT AACATCGAGAACAAAACCGTTTGGGTTGGAGATTTGCATCACTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTC CACCGGCGAGATTTCCTCCATCAAAGTTATTCGCAATAAGCAGACTGGTTTATCAGAGGGTTATGGATTTGTGGAGTTCT ATTCACACGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAGTCTTGATGCCCAATACAGACCAACCTTTCCGTCTG AACTGGGCAACATTTAGCACTGGGGAGAAGACTTCAGATAATGTTTCTGATCTTTCAATTTTCGTAGGAGATTTAGCTGC AGATGTTACGGATAGTTTGTTACATGAAACATTTGCTAGTGTATACCCTTCAGTCAAAGCCGCAAAAGTTGTTTTTGATG CCAATACTGGCCGTTCGAAAGGCTATGGTTTCGTCAGGTTTGGCGATGATAATGAGAGATCCCAGGCTATGACTCAAATG AATGGTGTTTACTGTTCTAGCAGACCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGG CCAGTCAAATGGCACGTCCAGCCAACCTGAATCAGATTCCACAAATACAACTATATTTGTTGGAGGACTCGACCCTAATG TTACAGAAGAAGATCTTAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTGGGGAAAGGGTGT GGTTTTGTCCAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACAATTGGAAAGCAAAC AGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGGCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCACTTTTGCAATCCCACATTCTCATTATTATTGCATTAGGTCTCATGATGTTGTAA
Protein sequence (LotjaGi5g1v0024200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQSNGSDSSTEPNNKQRSAAVAVPQQWVPMQYPAMVMPHHMLPPPPQHYPPPPPPYVPYHHHHHQFAPPHQQHHHGSNN NIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM NGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC GFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQANSLSLSLSLSLSLSLLQSHILIIIALGLMML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 363 | 363 | - | – | |
| PANTHER | 11 | 363 | 353 | 1.3E-198 | – | |
| PANTHER | 11 | 363 | 353 | 1.3E-198 | – | |
| SUPERFAMILY | 50 | 166 | 117 | 1.07E-22 | ||
| MobiDBLite | 58 | 77 | 20 | - | – | |
| Gene3D | 84 | 164 | 81 | 2.8E-23 | ||
| ProSiteProfiles | 85 | 165 | 81 | 14.658 | ||
| CDD | 86 | 166 | 81 | 2.12937E-46 | – | |
| SMART | 86 | 161 | 76 | 8.6E-14 | ||
| Pfam | 87 | 150 | 64 | 1.4E-12 | ||
| Gene3D | 177 | 253 | 77 | 3.0E-20 | ||
| CDD | 177 | 256 | 80 | 1.52678E-47 | – | |
| ProSiteProfiles | 178 | 257 | 80 | 16.364 | ||
| SUPERFAMILY | 178 | 357 | 180 | 2.87E-44 | ||
| SMART | 179 | 253 | 75 | 6.8E-17 | ||
| Pfam | 180 | 249 | 70 | 2.5E-14 | ||
| MobiDBLite | 253 | 289 | 37 | - | – | |
| MobiDBLite | 258 | 289 | 32 | - | – | |
| Gene3D | 259 | 364 | 106 | 6.6E-28 | ||
| CDD | 282 | 353 | 72 | 2.36804E-41 | – | |
| ProSiteProfiles | 283 | 355 | 73 | 19.229 | ||
| SMART | 284 | 351 | 68 | 3.5E-23 | ||
| Pfam | 285 | 349 | 65 | 6.9E-21 | ||
| Phobius | 364 | 389 | 26 | - | – | |
| Phobius | 390 | 392 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0024200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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