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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0025000 |
Transcript ID | LotjaGi5g1v0025000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P23984|SCAF_ILTVT Capsid scaffolding protein; TrEMBL-Plants: tr|A0A0S3SX19|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0025000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4316001..4317620) extracted from Lotus japonicus Gifu genome v1.2.
TGCGAATCTTCAGGATTCAACTCATGATTACTACATTCATCCGAATGAGAATCCGTCTTTGGTGCTTGTGACTCCGATTC TTGATGGAAGCAATTATCACGGTTGGGCTCGTGCGATGGAAATGTCTCTGCAGATGAAGAACAAGTTTGGTTTTGTGGAT GGTTCTATCACCAAGCTTTCTGATACAGATCCTATGCTCTCTGCCTGGAAGCGTTGCAATAATCTTGTTCTTTCATGGAT CAATCACTCTGTTTCGCATGAGATAGCCACAAGTATCATCTGGATTGATACTGCATCAGCTGCTTGGAAGGATCTGAAAG ATCGTTTTTCACAAGGTGATTCTGTAAGAATCTCTCATCTTCATCATGAATTGTATTCTCTTAAGCAAGCTGATTTGTCA ATTACTGCATATTACACAAAAATGAAGATTCTCTGAGATGAAATGTGCAACTATAGGCCAATTCCAACTTGTACTTCTCC TGATGCTTGTTGTTGTGAAGCTGTGAAAACCTTTAAGAGGTATCGAGACAATGATTGTGTACTTTGTTTCCTGCGAGGCC TGAATGATAACTATGCTGCAGCCCGTTCACAAATTTTGCTAATGGATCCTTTACCTGATTTGCCAAAGATATTCTCTATG ATCATACAGCAGGAGAGACATCTTGGCATAGGAGTGTTGCCAGAACCTGCAACAATGGCAGTTCAAACTTCACAATCACA ATCGCAGAATGCACAATCTCAGTCATCTGTTTCTAACAAAGGAAAACCGAGTTACCAAAAATCTTACAACAAGAGCAACA GGCAGTGTACCTATTGTGGTAGAAACAATCACACAGTGGAAACTTGTTTTCAGAAACATGGATATCCTCCTGGATTTCCA AATGGATATAAGCCAAAGAAGGCTTATCTTGCTGCTTCAGGTGATGATGTTCCTGCTGATGAGGAGCAGTCATCTTCTTC AAGTTTGGAACTCACAAGGGAACAACTTCAAGGTCTCTTAGCTTTGCTCCCTTCCTCTAAGCCTACAGCTACTACACATT CTTCTAATCTTGTGAGCAGTCACAATGCTATTTCCAATGCCATAGGTAAACCTACTAAGCAATGGATCTTGGACTCAGGT GCCACTGATCACATTGCTTCTTCTCTCAGTTTCTTTGCTTCTTATTATGCCATAAAGCCCGTGCCTGTTTCATTACCCAA TGGAGAAAGTGCAATAGCACAACACATAGGAACAGTATATCTTTCTCCCACTTTGACTTTGCATAATGTTCTTTATGTGC CTAGTTTTTCTGTTAATCTAGTATCTATCCATAAACTTACCAAGGTATTGTCATACAAACTGATTTTCAGTGATGATTAC TGTCATATACAGGACAAGATCACTTTGAAGATGATTGGGAGAGCTGAGATCAAGCATGGACTTTATATCATGGTACTTCC ACCACTACAACAAGTTCAACCTTTAGTTACTCTTCATTCAGTCAATATGGCTAGGTCCCTACCAATCCAACTGCCTCATA TTTGGCATCATAGGCTAGGTCACCTTTCCCATTCTTGTTTTGAAAATTTACATAAGTTGTACCCTACTATCCCTCTATCC CATTGTACACCTTGTGATTC
CDS sequence (LotjaGi5g1v0025000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAACTATAGGCCAATTCCAACTTGTACTTCTCCTGATGCTTGTTGTTGTGAAGCTGTGAAAACCTTTAAGAGGTA TCGAGACAATGATTGTGTACTTTGTTTCCTGCGAGGCCTGAATGATAACTATGCTGCAGCCCGTTCACAAATTTTGCTAA TGGATCCTTTACCTGATTTGCCAAAGATATTCTCTATGATCATACAGCAGGAGAGACATCTTGGCATAGGAGTGTTGCCA GAACCTGCAACAATGGCAGTTCAAACTTCACAATCACAATCGCAGAATGCACAATCTCAGTCATCTGTTTCTAACAAAGG AAAACCGAGTTACCAAAAATCTTACAACAAGAGCAACAGGCAGTGTACCTATTGTGGTAGAAACAATCACACAGTGGAAA CTTGTTTTCAGAAACATGGATATCCTCCTGGATTTCCAAATGGATATAAGCCAAAGAAGGCTTATCTTGCTGCTTCAGGT GATGATGTTCCTGCTGATGAGGAGCAGTCATCTTCTTCAAGTTTGGAACTCACAAGGGAACAACTTCAAGGTCTCTTAGC TTTGCTCCCTTCCTCTAAGCCTACAGCTACTACACATTCTTCTAATCTTGTGAGCAGTCACAATGCTATTTCCAATGCCA TAGGACAAGATCACTTTGAAGATGATTGGGAGAGCTGA
Protein sequence (LotjaGi5g1v0025000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCNYRPIPTCTSPDACCCEAVKTFKRYRDNDCVLCFLRGLNDNYAAARSQILLMDPLPDLPKIFSMIIQQERHLGIGVLP EPATMAVQTSQSQSQNAQSQSSVSNKGKPSYQKSYNKSNRQCTYCGRNNHTVETCFQKHGYPPGFPNGYKPKKAYLAASG DDVPADEEQSSSSSLELTREQLQGLLALLPSSKPTATTHSSNLVSSHNAISNAIGQDHFEDDWES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 214 | 212 | 5.7E-52 | – | |
PANTHER | 3 | 214 | 212 | 5.7E-52 | – | |
MobiDBLite | 87 | 115 | 29 | - | – | |
MobiDBLite | 158 | 178 | 21 | - | – | |
MobiDBLite | 186 | 205 | 20 | - | – | |
MobiDBLite | 188 | 205 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0025000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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