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LotjaGi5g1v0025400.1

Overview

Field Value
Gene ID LotjaGi5g1v0025400
Transcript ID LotjaGi5g1v0025400.1
Lotus japonicus genome version Gifu v1.2
Description Heme oxygenase; TAIR: AT2G26550.2 heme oxygenase 2; Swiss-Prot: sp|O48722|HMOX2_ARATH Probable inactive heme oxygenase 2, chloroplastic; TrEMBL-Plants: tr|A0A0B2SHY8|A0A0B2SHY8_GLYSO Putative inactive heme oxygenase 2, chloroplastic; Found in the gene: LotjaGi5g1v0025400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4347792..4352078) extracted from Lotus japonicus Gifu genome v1.2.

CCACAAAGAAGAAGTGAGTGTTTCCGATGTGGTTAAGTGCGAAACCCGTGCAACAACTATGGTTCCCAGCAACACCACCT CCTCCGCCTTCTAAGTGGAGCTCCGCCACAAGAACAACCGTCAAAATGAGGGTGGTTTTCAACAACACTTCTCCGCCGGT GCAAAAGAAGAGGAAGCGGTACCGGAAGCTCTACCCTGGAGAGACCACTGGAATCACCGAAGAAATGAGGTTCGTCGCCA TGAAACTCCGCAACGACACCACCGTCGCCACCGCTCCCTCCACTTCCCATGACGATACGTGGCAGCCCTCCATGGATGGC TTCCTCCGCTTCTTGGTCGACAACAACCTCGTCTTCGCCACACTCGAACGCATCGTCGACGAGTCCGACAACGTTTCATG TAAACCCTTAATTTCAGCTTAGATTTTTCCTTAATTTTGAAATTGGCTAGAATTTCTCAAGTTGAATTCAAGGTTAAGTA AGATTGAGCTCAATTGTAGATCCATATTTACTTCAATACAAATTCAAACATACACTTAGTTGCTATGCAAGTGAGGCTAC TAATTGGTTCCAATATATTATTACTTTATCAATAGAGAAGCTAGAATTGCTTTCGTTTAACCTAACTTGGATCGGAGAAG TAAGATTTTGCCACATTGAGCTCAACGGAAATTCAAACAAACATTTAGTCGTTAATCGCGGAGGTATTATATTAGGTTCC ACTATATTATTACTTTTAAGTTAAGGTATTTTGACAATATGTTATTAATGTATTATACTTATGATTTATTTATTTATTGA TATGGAAGTTGGATAATTATTATGGTTAGATTATGATTATGAGTCTTTTGTGTGTTTGCAGATGCGTACATGAGGAAATG TGGATTGGAAAGATCAAAAGGGATATTGAAGGATCTAGCATGGTTTGAGGAACGAGGGCTTGTGGTTCCGACTCCCAGCT CTCCGGGGGTTACATATGCAAAGTATTTGGAGGAGCTTGCAGAGACAAGTGCGCCCTTGTTTCTCTCCCATTTCTACAAC ATCCATTTTTCTCATATAGCTGCTGGTCAGGTCATAGCAAAAAAGGTTTCTACCTTCCTCTGAAAGTGGGATTTTCTTTC TTTCTTACCAAGGTGTTGTTGTTCGATTGGAGAAACAGGAAAGGAGACAACTGTTTTGAGTCCATTTGATAGTGAGTGAT AGATGAAACAGTTAGATAATTTGTTATATTTTTTAATATAAGAAGTGAAGGGAGTTTTGGAAGTTGATGACATACAGACA GACCCTTGTGAGAGAGAGAGAGAGAGAGAGTAGGAATTTGATTGGTTATCGCTTATCAAATGAAACCACAACTCAAAGAT TTAGCTTTCTTAAAAAACTTGAAGTTCCATTTGCACAAGCATGGATTCATGGAATAACTGAATATAATCTGATTGCCCTT ATTATGTAGGTAGGTATTTGAGGAAATATTGGCCCTTGAAAGGGATGTTGGAAACTTGGAGTAGAATAGGCCATCGGATC AAGCAATTAAATGTTTTTAGTGTGGATCTTGTCCCATTAACTCTTGGATTGTATTGAGTGATAGCTTAATTTTGATTTTG ACACATAATGATATCAGAACAAAGGCAGGAGTAGGTTTTCTGTGCAGATAGACCGTCCAATCTTGCAGAAGAGAGACTAT GATTTGTCTTTCCAATATTAATAGGTTTTAAAACCCTGCAGTTCAACTTTGAATCAGAATTGAAGAATTCCTTATATAAA GAACTTAATTATGTACATAGGATGAAACCCTAAGCTTATCATTCTATTTTTGTTGCTTCTAGGTTTCTGAACAGCTCCTG GAAGGTAAGGAGCTGGAATTTTTCAGATGGGAAGGAGATGTACCAGAAATGCTGAAAGGTGTTCGTGAGAAGCTTAACAT GCTCTCAGAGGTTGATTACTATGTATCCTTTAATTGTGGCTTTAGTATAATATTTAGATGCTCTGTCATTCTTATTTATT TATGTTTGACTGGTTCATGCAGCATTGGTCTCGAGATGAAAAAAATAAATGTTTAAGAGAAACAACAAAGTCATTCCGGT ATATGGGACAGATTGTTCGCCTGATCATCTTATAAGAAGACTGTTGATGCTCTTTCTATTTTGTTAATAGCACTGACTTT TTTTATGGTAAGCTTTCTAGAAATTCCTTTTTCTTCCTTTAACTTCTGGAAATTGAGGCTTTTAATTGATATCGGATCAG GCGAGGTCACCGCTATTGTTTGATGCATTCTTACAAAATGTTTTTCATTCTTAAAAGAGAAATATATGTTTGTTTTACTT TTAATGCTGAAAAGGAAAAATGATACGTTTCATGTTTTAACATGTGGTATTGCTCTTGAGTATCATATTTCTTACATTAG ATTGCATGTAAAATTTGTTTATTGGGCTATTGGAATATTAGTTAAGCCCAAGGAGGTCATAGCAGCAGTCTTGTCACAGC AAATATTGTTGTTGTCTCAGGCCAAATTTCAAAGGGATGACTTTGAGCCTTATCATTTAATTTTAGCATATCCCAGAGAA TACCACAATGCATGCTTTTTTATGGATGTTATATTCTTAATTGGAAATTGAAGAGAAGAAATAAATGGAAATTTTGTGAG ACGGAGACAAACATCGGTAACACATGACTTTTGTATAAGTGAAATAAAAACAAAGTGTATAAAATGTAAGTTAATCAAGA TAGATACGAGTTGTAACTTAGAGGTCAAAATTGGAGAATATATTGGTCTCATGGTTTAGGTACCTTTGGTCCATCATACA GAATATCTGAGACTAAATGTTGGGTGTAAAGAGCTAGCATGAAAGTAAAATTAATGTCAAATAGATGAATTTGAGTTTGT TTCAATGGATAAGTGAATAAACAAGACAATATAGAACTTGTAGTACGATTATTAGGGAGAAAATATGGCTAACTCTTATG TAGAAAAGATGGTAAAGTTTAGTCTGTAGATAATTTTCACATATAATAAGACCCACTAAACCATCAACTAGGAAGGATGA CGAATCTAGAAGTAGAGAGAAATCAACCAAACAATTAATAAAGTTAGAGATTCGTAGTTTACCTACTCAGAAAAGATTTG GTTATTGTTATTGTTGTCACTGCTCACATTTATTCTAATTTCAATGTTTCTTTTAGATGCAGGACATTACCTCTGTCAAG AATTTGCCCATTCCTTATTGGCAAGAATTTTTAAGGTAGAGCCAAAGGGGGTAAGACTTAAATCTTTATTACAGAATACA GATATAGCCTAGCGGCAACTTCTTGAGGTTCATGATTCCTTTCGTATTGTGGACATTATTTCCGGCTAGCTATTAATGGT TTGATGTTGTAATTTGGATGTTGTTGAGATTTTAAGATCCTTTTTAGTGTGTTTGGATACTAGTTGAGTGCAACGTGAAT GAACTTTTACCTCAATCAATATGAAGGGTTTTATTCACTTTTTGTCAACAAGTGTTTGCTAATGTCCTGTACACCGGTGA CTAACGGATATCTTAACAGATATTCCTTATGCTCCTGTTGAGTTGCTATATTGAAAATTTTATCCATAATGTATAAAATT TGTGGTATATATGACTATTGATCTTTACATGGGTGCAATTTTCCATATTATCTCCAAAACCTTTGTCTTTTCACTAACTT CTGTAGATCTACTTGTGGATGCTATTTCCAAATTTATGCTTGGAGAGCATCCCTCTTTAGGAAGATCCCTTACGTTTGTC ATTTAGACTAGTGCACTAATGATTTGAGGAGAAATATGCTAGCAACACATTCTTTTAAGAAACCACTCCAACACACTCAT TATAATTGATTTATATTTTGGAAAAGTCAATTTTTAAAGAAGTGAGAACATTTTCTAAAAAATAAATCAATTACAATGTG AGTTAAGCCCCTCCTGATTTTCATAGATGGCATTGATGGTAGGGTTGATGGTGTGTTATCTCTTTTCTCCTATACTTTTT TAACATACTAATATAATAATAGTGAATCTTCCGAAAGGGATGTAATGAAAAGTATATGCTGATTTTATTTTTAGATAAAT TATACCTTACTTGCGGAGATATGCTTTAATTACATAGTCATTTCATTTAAATCTTTGCATTATTTTGTATAAGAGATGAT TTTTTTAATTTAGTCTAATTCAAAATAAATGATTTTCTTAATAGTAGTAAAAAGCTATGTACATGTTTCTAATGATGAAT TCTATAGCTTATACCACCAAATAGGTGATGTATTAAAATAAATGATT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0025400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGTTAAGTGCGAAACCCGTGCAACAACTATGGTTCCCAGCAACACCACCTCCTCCGCCTTCTAAGTGGAGCTCCGC CACAAGAACAACCGTCAAAATGAGGGTGGTTTTCAACAACACTTCTCCGCCGGTGCAAAAGAAGAGGAAGCGGTACCGGA AGCTCTACCCTGGAGAGACCACTGGAATCACCGAAGAAATGAGGTTCGTCGCCATGAAACTCCGCAACGACACCACCGTC GCCACCGCTCCCTCCACTTCCCATGACGATACGTGGCAGCCCTCCATGGATGGCTTCCTCCGCTTCTTGGTCGACAACAA CCTCGTCTTCGCCACACTCGAACGCATCGTCGACGAGTCCGACAACGTTTCATATGCGTACATGAGGAAATGTGGATTGG AAAGATCAAAAGGGATATTGAAGGATCTAGCATGGTTTGAGGAACGAGGGCTTGTGGTTCCGACTCCCAGCTCTCCGGGG GTTACATATGCAAAGTATTTGGAGGAGCTTGCAGAGACAAGTGCGCCCTTGTTTCTCTCCCATTTCTACAACATCCATTT TTCTCATATAGCTGCTGGTCAGGTCATAGCAAAAAAGGTTTCTGAACAGCTCCTGGAAGGTAAGGAGCTGGAATTTTTCA GATGGGAAGGAGATGTACCAGAAATGCTGAAAGGTGTTCGTGAGAAGCTTAACATGCTCTCAGAGCATTGGTCTCGAGAT GAAAAAAATAAATGTTTAAGAGAAACAACAAAGTCATTCCGGTATATGGGACAGATTGTTCGCCTGATCATCTTATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0025400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWLSAKPVQQLWFPATPPPPPSKWSSATRTTVKMRVVFNNTSPPVQKKRKRYRKLYPGETTGITEEMRFVAMKLRNDTTV ATAPSTSHDDTWQPSMDGFLRFLVDNNLVFATLERIVDESDNVSYAYMRKCGLERSKGILKDLAWFEERGLVVPTPSSPG VTYAKYLEELAETSAPLFLSHFYNIHFSHIAAGQVIAKKVSEQLLEGKELEFFRWEGDVPEMLKGVREKLNMLSEHWSRD EKNKCLRETTKSFRYMGQIVRLIIL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR35703:SF1
33 265 233 2.7E-123 –
PANTHER
PTHR35703
33 265 233 2.7E-123 –
CDD
cd19165
62 263 202 4.66573E-45 –
Gene3D
G3DSA:1.20.910.10
64 264 201 2.8E-30
IPR016084
SUPERFAMILY
SSF48613
91 262 172 8.15E-32
IPR016084
Pfam
PF01126
98 261 164 1.3E-6
IPR016053

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004392
Molecular function Heme oxygenase (decyclizing) activity Catalysis of the reaction: heme + 3 donor-H2 + 3 O2 = biliverdin + Fe2+ + CO + 3 acceptor + 3 H2O.
Subterm of
GO:0006788
Biological process Heme oxidation The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in heme.
Subterm of
Part of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0025400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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