Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0026200 |
| Transcript ID | LotjaGi5g1v0026200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase-like 3; TAIR: AT4G33380.1 dimethylallyl, adenosine tRNA methylthiotransferase; Swiss-Prot: sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog; TrEMBL-Plants: tr|M9RTK5|M9RTK5_9FABA Uncharacterized protein; Found in the gene: LotjaGi5g1v0026200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4410659..4419018) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCTTTTTCAAAACGGATTATCTTGCTTTGGCCCATATTTAACTCTCACAAGAAAGCTCTTCATCTTATCAGCACAAG AAGTTGTAATAGAGCTGCTGATTTTACGTCTAAATAAGCACTTTCTTTTCCAAACAATATATGACATGAGGTGAGTCCTT CTAGTCTAGATTCAATATTGTTAGATGAAGAATCCATGAGTCAAACCCATACATGACGCAATATTATAAATACAAGGAAG ACTGCACCTAGCCGAACCGTTTAATTTATTTTCAATTTATTTTTTTGCTTTATTTAAAAAAAAAAAGACAAAGTTGTAAA GTAGCGCATGTTAGCTTGAACGAGGGAGGAAGGAGACACGGTCTGTCATAAATTAGAAGCGCATATTAGCAGGGGCAGGT GGTACACCATCAATGATGCCGGTAACCACCGAAATGATTAGCTGATCTATTCATCCCAATCCGATTCCCCACCTCACCCT CACCACCAGTCTCCGACATCAAGCGCACGTTAGCACACGCCACAACAAGGAAGCGCAAGCTAGCTACCCACGAACAACAA CAACAACAACAACAACCTGGGTTGGATCTATATTCTGGGTCGCACAATCCGAGGTTCAAATTGTCAAAAACTCGCGCCCT CAGACTCAGAGGGCAATGGTGGGATGAGGATAAAGGTGGAAGAGAAGACATGGCGAGAGGGGAGTGGAGGGCTCAACGAG GAAAGTGGATTTGTTCATACAAGAAAATCACTCTTGTAGTTTGCTTTTTCAACATTGCCGTCGCTCTCTTCTGTCTTCGT TCTCTTTATGCTTCTCTTTACATCTACTCCGGTAGCGTTGGACGAAACAGTAAGTTAATCCAATCTGGGTAAATTTTTCT GCTTTGCCTTTTATGGAAAGTTTTGAAACACCCCATATTAACAAAATTCAATCTTTGAATGTTTCTTTATCTGGGTATTT TTGTGATTTCAGTTGTGGTGTATAGACCAGATCAGATTCGGAAAATGGAAGAGTCAATCCAAATCCGCAAGTCACACAAA CCGGTGGAGTTGATAAAATGGGTAAGGACTGGTTTTTGCATTTGGCTTGAAAAAAAATCAATTCTTTTTAAGTTAAATTG AAGTTTTGATGTTATGAAATTGTTGTGCAAAACAAGGTGGAGGCATTGGGAGAGGAGTTTTCGAGAGATAATGTGGAGGT TGAGTTGCCTCAGCACTTGAAACAGAAAATAGTTGATGAGGTCTTGCAAAGACTAGGGAGCTTGAGTAGCAGCAGTACAA ATATCTCTCACTCTCAGGTCATTGTTAAGGAGCGAGGTGAGTGCATTGTGATAGATTGTGCTGCACAAAATGTTTTATTC CTTCTATAGTTGAACACTAAAAGGGGAACTGATACCAATTTTACATGGCCAACCTGATTATTATCCGAAGTATATGTGAA ATATGTTTATTGTGAACTTCATGGGATTTGATTTATTCGAATTGGGGTCAGAATTATGAAGCTTTTGGAAGAGTTGGTTT GGGTTTATATTGCGTAATCACTTAAGCAAGTATTTGGTTAAGTTTATAGAAGTTACTTATGACCTATCTATGAGCTCATT TGAGCTTATTTTGATAAGCTTTGCAGATAAACTTATGAATAAGCACTTACACATACCTATAAGCTTTTTTTAGATTATGT CAATAAGCTTATCAAATAAGCTTATGAATGAAAGCTTGTGTGAGTTTATTGACATACGCATTTCATTAAGTCATTGACCT AACTGTTAAAAATAAGAGGATCATATTAAAAAGCTGACACTGAGCACACCCTTACTAAGAGGATCATGATTTCATATTAA TAACATCATTGAACCCTTGGAAGATTTTACTTTTCACTGTCCTTAACAGCATGCTGTTTTTTTTTTTCTTTCTCTCTTTT AGAGCAAAACTGCTGCATAGTTAAAAGGTCTGATATATTTTTGTTTAGATATGATGAATTCTTAGATGTGACTTTTCTAT TTTTATGTTTTTATTGATTGCTGGCAGATCATTTACTGTATTTTCTGTTTTTTAAGGAGGAAACTATCTGTTTCAGGTTT CAATTCAAATATAAATTGGACTGAATAGTTGCTTTATGTAAATCTTAGGTCAGTCACAATTAGAAGACATAATTGTAAAT CCATTTTATTAACATTTTTGAGGAAATTGCTTTAATAAGATAATTCACTCTCCTCTCTTTTCGGGATTATGCTGTTTAGC ACGACCCATTTTTATGCTCACCTCCACAACAAGTGATTACTAACTGATGGTGCGTAGTAGTGCCTGTGAGAGCCGTGCAA AATAGCACCGCTCTTCTTTTTTTCCTTTGTTTTTTCATTCTTAAACTTAGGAAAGAGACCTTTTTAGATTGTATTAATTT GGTCCTAGTTCAAACATCAAGAGATCGTAATTTGACAACACAAACTACTTCTGGGTGTGCTTATCTCATTAGATGATGAA GTGAATTAATAATTGAAGAGTGAAGATTAACCTCGTGTTACAGTTGGATGACATTGATTGGAGGTTATTGTGTGATCAAC TCTTTCGCTGACCTAAAGGAGCATGAATCTTCTAACTTTTGAAACATGTAATGATAATTATAATGCATGAAGTTGGCAAT CACCCATCTATTTTCCCTGAAGATCATTTTACTTTGTAAGGAAAAGTTTGATGTTTAATAAGAAAATGGATTTGTTCATT TGGATTGGATGCAAGATTTAAGTATTTAAACATGTGGGATTAATTTATGTTTTATTTGATTTGTCGAAGGACTTTCCTGT TTTAATCCTTCAGTATGTTTTCTTTCTTCTTGAAGAAGGTATTAATAAAAGTGAGGCATAGTCTAAATATAAGTAAACTG AGAGAAAGGAATCTAAGTAGAAGTAGATGTGAGATTATGGAGGTGCGAAACTTTTACTTATAGCTTGAAAAAACCTTTTT TTTGATTGTAAGCATTATATTTATCCTGGTATGAGTGATTGATGGAACCTTTCATTTTTTTCATCTATATAATGTATATA TGGATGTGTAACTCAGAACTAAAACTTAGCATAATAGTTCTTATACTTAGTAATATATGAAGGCACTGAGTGAACTTTTC TCACTGCCGTGAGTGTCCAGAATGCTCGTTATCTATTTGATTTATGAAAGAACATTATTCAATATTTTCAGGTTTTATTT ACCTAGGGCACAGAAATTTTTACACTGATAATGATTGTGGATCAATTAATTAATTCAGCATTTGACATTGTGTGTAATTA ACTGATTTCTTTTTACCAAATTGGATCACATTATTTCATTAAAATGTAAATGATTTTAATAAAATATCTTATGAAACTGA AATGAAAGTTAAGAATATCTTGCACAGGTTAGAGTAATCAACACGAGTATTTGGGGGAATTGATAGGGTCTCACAGCAGT TAGAGTATTATTGAATCAGAAAATCAGTGCTATACATCAGAAAAAGTACCAACCAGAGAAATATGGTTGTACACAATATC TCAAAAGAAAAACCTGCACCTAAAACACTCAAATGTATGTTTGGTTTGGCGTTTTGCCTGTGAGCACTGCTCATGTTGGA TAACCCCCACAGCTTCCTTCAGGAACATACTTTCCATATCTTGGGCTTTGGGCTAGGGTTCAAGAGCTATTGTCTCATCC TTTGAGTCATTTTCTGATTGGACCTGGGTCTCTATCAGAGTATCTTCAGCTTCAAAATTCAAATCAATGCATCAGACATT CTGTATGATGTCCAGTTGAATCTTCCATATGGAACTGTTCGATCTGTCATTTCCTTTTGGTGTTTGGGGAGTAGGGAAAT AGGGGAAATAGCAAACTTGAGAGAAATCTTGGTAAAAGCATAGCACATAACTCAATTGCAGGAGCCCGATATTTTTATTT CTTGTCCTCATTTAATGGCTTGATGTGGAGATTTCTATTAATCTGTTTCAATATCATTATGCTCTCAGTGTCAAAGTGAA CAAGTCTCTTTTGGGCGCAGGGAGGAATCCTGATTGTGCCAGAGATTAGAGGAGAGTAGACCAGAACGAATCTCATTTGG TTTCCTTGGGTTTTTTTGTTTTTTTTTTAACCTGAGGGGGCTGTGGAAAATGGGAACTATAAATCATTCTATTTTAGACT CCAAAATTGTTAATGTTATGTCAATGATAACTTTGTAGAATTTGGAACTTCAGTTCTTAGAAGATATTTTGTGAATAGCA TATTTTTAAAATCGACTCATCTCTACAGAAACAGTTGTAAATTGGCGTAAGGAAAAGCTGGAAGAGGTTAAGTTGGCCGT CACCGGAGGGGCTTCCAACTCAACTATTTCTCATGAAGAGGCAGGTGTGAACTGTGAACAATGATTTTCTTCTGTTTTCC GACATTCTAAATTTAGTTGATTGTGAAGCACTTTTAGATAAATCTTGTCTCTTTGCACACTAATAATTAATGGTTTACAA ATCTTTGACACATTGTACTAATATCTGTTTCAACTTCCTAGGAATGCTGGTAAGAGCTTTGGAGTCCGATTGGGGTGCAC TTTCTGAAGAACTTGGCCTTTGGATTCCTGTTGAAGTTGCTAATGAAGTACATGATGACAAACCTGAGGGCGTAGAGGAG TTAGGTAATAGTTTCTCCAGTCAAAACACTTTTCCCCATCATACTTTTGCATTCTTTCACTCTATCCCTATACCTCCCTT ACTGTAAAAAAAATCATCACTATAGTGATTTGGTTAAATATGACACGACATTATGATTCGTTATACTCTATCCCTAATTG TTGGAATCTGTAAGCGACATAGTATGCATGCACTGTTGTTAGAATCTGGAGGTGTGCACATATTTTTCCATGCTGAAAGG TAATCTGTATATTTACCAAGTATATATATTTTCTCCAGAGGAGGAAGTTCTTCCCGGAAGGCCTCTTCCACCGGAGTGCA AAACTGAACTTCATACAGATTATGGTGGTACTGCAGTAAGATGGGGTCTTACTCACCACAAAGATAGTGCAGCTGATTGC TGTCAGGCTTGCTTGGACCATGCTAAACGTGCCAAGGAAGGAGATAAGAAATGCAATATCTGGGTTTATTGCCCATCAGA GTTTGGGTGTCATTCACCAGATATCTACCAGCACAAACATCAGGAATGCTGGCTGAAATATGTAAGTTGTACCCCCTGAA TGTGATTCACTTGTTTGCATCCTCTCTATGTATAATGCTTAATAGCTGGATACTCTTAGGGTGAGTTTGGGTAACCAGCT TAATTAAGTGCTTATGGCAATAAAAACTCTTATCGCATAAGCCCTTATTCATAAACTAATTTGAGGAATTTATTGAAATA AGCTAAAAATAAGTTATTACTAAGCTAATCTGAACAACTTATGAAAATAAGTTCAATACAGCTTACAGATAGGCCATAAG CTATTTATAGAAGTCCTCCCAAACACTTGCATAAGCACTTATGTTATAAGATCAACTCAAATAATATCTTACGGGTCTTA TTCCTGTAAGATCAGACAAAATAGTCTTACTTTCACATTATGTCTAGTCTCAGCATGAAAAAAAACTGTCTAGTCTAAAT TTCCTTCATAATTCTGCAATATACTAATTTTCCTTTTCCCTCGTGGCTAATATACTCCCTTGTGGTATTCTGAATCCAGG ATGAGAAACCCAAATTAAATTTTAAGGATAGGTATCCTGAATGGTATCGAAACTCACACCCTTCTGCACCGGTGATCGTT CCATGGGCTGCTGGAGTTGTTGGTGCATAAGATAAATAACCAACACCAAAGGTATAACATGACCGACCAGAGTCCAGAGC TACCTTGTAGATTACAAGCCTCAAAGCTAGCTTTGGCAAAGCTTTTGTCATGCTTTGTGGATTATACTTATGTTACTCAA CATGATTTTGCTTTTCTTAATCAACGAAATTAAGTGGGGAGTAAAGGATTGTCCCCAATGGCCATTCCTACCTTTTGGAC TTGATTTTGGTCATAATGTGTTATTTGACTGACTCATCATCTCAGTGCCCAGGATTTTACCCCAAGACCAGCCTAACACT GAGGTGAGGTGACTTAGGTTTGTTTGTTTTAGATTCTTGAATGGTGTAATAGGACTTTTGACCACAGAACCGAAATTTAC TTTCTTTTCAAGTGCATTGTGAAGTGTTATTTTCCTGTTTGTGTTCACCAAAATGTGAAACAAACATGCACATGACTGAT GAGGAAGTTGTTTTTTGTTGTGAGCTATCTGATATCATAATTCATTGTACCTGCGGAATTTGTAATCCTACTCAATATAA TTCCTGTTCAACACATGTCATTGTTGATGATGATCATAAACCATATCTTTGCCCTGCCTTGTTTTTGTTTTTATCCATTC AGACATGTGTAAATAGACTGTTAACATAGGGATTGTATAATCCAAGTAATTTTATTGATCAGATTCTGAAGGGCTTCCAC TATTAATACTATCAGGTATTATAGGTACCCAATATTGCTATTGATTGCACTGCATATGTGGTCTCCTTGCATTGCATTTT GCTAAGTTGGTGGCTAAGAGTTAAGATCTTTTTGGTGTGTGGTTAGCCTCCTCCTGAAGTGCTTTTCATGTTTCTTACTC ACCTTTTTAAACTATGTAAATTAATGGCTACCCCCTCAACCTTTTTTTGTTTAAAGAAAGTAATAAGGATGGTTATTATA TTCCATGTCCTGGTTCATATCATCCAATAAGTGAAGGTGAACAACTTTTATGTTCAAAAGATTTCGTGTTGCTAAAAGGG AAAAAAAGTTGAAGAGATTTTGCATTTACACATGGCAGAAAGACCATTTTAGGAGGATTTCAGGTGCAATTTTAAACTTT TCATGGGACAAGTGAAAAAGTACTATCTCTTAAACACAGGTATTGATAGCTGAACGGGAACCTTGGCAGCATCAGCAGCG GAGCAGGTGGTTCTCTCAAATCCCAGCAGCAACATCTCCTCTAGTCTTGTCCGGCCGCCCCCAAGGGAGTTCTTTTTTTT TTTTTCCGGATGGGGCCTCTCTCTCCCCTTGATGGAATTTTCTACCTGCATTAGGTAGGTTATTCTCTCTCCTCCGTGAG ACTTTTCTTCCTTCTCCCTAACCAGCGTCCTCCACCACCACTTGTCCGACTACCACCACTACTCCTTCGGCTCATTCTCA CAACCACCTCACCTCCTTTTCCCTACAGGTTCATCCTTTGTTTGTCTATTGTTTTTCCTTTGTTGTCATTGTGATTGGTT TTCTCTATTTTTTGATAAAACATGCTTCCCACCCTCCACCTTTGCGCTTTTGCTCCCCGCCACTACTCACCCATTCTCCA CCACCACCTTTGACGATGTTTTTCATCTACTCCACGCTCTGAAGTGAAGTTGAGACCATGATTTTAAAAGTTGTACAGGT TGCAACTCTGCTGATTAAAGTTGTAAAAGTTGTAGTGATGTCTAAAAAAAGAGCTATGCTATATAGACTGGATAAATGGT TTAGAAAATGCAAGAATAGATACAGTGGGTCTTGGAGAGAAAATCATGGTGATTATGTAACGTTTTAAATTCTTTCCAAT CAGGGTTAAACATGCTTGGTTTCAGATCTGGCAACAAAAATGTCTAATCATTGGAGTTGAAGGTCTTTAGTCGCATAGGC TCGCAATAAGCGGTAAATAAATGTGCTGCATTCTTATAAGGAGGATATTGAATCTCCATACATCATGATTAAAGAGACGA ATGAGCAACCCAAAATAGCACATAGCGTGATTTTTCAGAAACTTTTCTTGAATCAAGGCATGTACAAAAAATTAATAACA TAGTTAATTATCGAATATTTTCTGCGGACTGCAATGCTAATAAATAATATAGAGAAAGTTGTTTCTATTCTTGAAGCGAA CAAGGAAGGCTGCACCGCCCTGGCCGCCGGTAAGCTCGACGAGGCGCTCCTCTCATCATCCGCCTCCGCATCCCCCGCCT CCACATCCTCCACCACATCCTCCGCCTCCACATCCCCCACCTCCACAACCACCACCTGTGCCCCCAATGATCACACCCAT CATCATTCCATCATGAAAGTTTTGGTGGTTCCCTCCACCACCACCACTTCGAGTCTCTGGCGTTAGTCCTTTTGCTTGCC AAATTCTCATCCATATGGCACCAATGATGAAGATCAAAACCATGGAAAATACTACTATAAGTAGTATGAGTTTTGTTTCC ATCTTTATCTATTGACTGCGATCTAGAACAAGCTTCCGTTTATGGCCTGGTACAAAATATGTGAGTACAGATCATTCAGT TCACAGAAAGAATTAATGTGAACCTTTTGAGTGAGGGGGG
CDS sequence (LotjaGi5g1v0026200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGAGGGGAGTGGAGGGCTCAACGAGGAAAGTGGATTTGTTCATACAAGAAAATCACTCTTGTAGTTTGCTTTTT CAACATTGCCGTCGCTCTCTTCTGTCTTCGTTCTCTTTATGCTTCTCTTTACATCTACTCCGGTAGCGTTGGACGAAACA TTGTGGTGTATAGACCAGATCAGATTCGGAAAATGGAAGAGTCAATCCAAATCCGCAAGTCACACAAACCGGTGGAGTTG ATAAAATGGGTGGAGGCATTGGGAGAGGAGTTTTCGAGAGATAATGTGGAGGTTGAGTTGCCTCAGCACTTGAAACAGAA AATAGTTGATGAGGTCTTGCAAAGACTAGGGAGCTTGAGTAGCAGCAGTACAAATATCTCTCACTCTCAGGTCATTGTTA AGGAGCGAGAAACAGTTGTAAATTGGCGTAAGGAAAAGCTGGAAGAGGTTAAGTTGGCCGTCACCGGAGGGGCTTCCAAC TCAACTATTTCTCATGAAGAGGCAGGAATGCTGGTAAGAGCTTTGGAGTCCGATTGGGGTGCACTTTCTGAAGAACTTGG CCTTTGGATTCCTGTTGAAGTTGCTAATGAAGTACATGATGACAAACCTGAGGGCGTAGAGGAGTTAGAGGAGGAAGTTC TTCCCGGAAGGCCTCTTCCACCGGAGTGCAAAACTGAACTTCATACAGATTATGGTGGTACTGCAGTAAGATGGGGTCTT ACTCACCACAAAGATAGTGCAGCTGATTGCTGTCAGGCTTGCTTGGACCATGCTAAACGTGCCAAGGAAGGAGATAAGAA ATGCAATATCTGGGTTTATTGCCCATCAGAGTTTGGGTGTCATTCACCAGATATCTACCAGCACAAACATCAGGAATGCT GGCTGAAATATGATGAGAAACCCAAATTAAATTTTAAGGATAGGTATCCTGAATGGTATCGAAACTCACACCCTTCTGCA CCGGTGATCGTTCCATGGGCTGCTGGAGTTGTTGGTGCATAA
Protein sequence (LotjaGi5g1v0026200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARGEWRAQRGKWICSYKKITLVVCFFNIAVALFCLRSLYASLYIYSGSVGRNIVVYRPDQIRKMEESIQIRKSHKPVEL IKWVEALGEEFSRDNVEVELPQHLKQKIVDEVLQRLGSLSSSSTNISHSQVIVKERETVVNWRKEKLEEVKLAVTGGASN STISHEEAGMLVRALESDWGALSEELGLWIPVEVANEVHDDKPEGVEELEEEVLPGRPLPPECKTELHTDYGGTAVRWGL THHKDSAADCCQACLDHAKRAKEGDKKCNIWVYCPSEFGCHSPDIYQHKHQECWLKYDEKPKLNFKDRYPEWYRNSHPSA PVIVPWAAGVVGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 332 | 332 | 3.6E-151 | – | |
| PANTHER | 1 | 332 | 332 | 3.6E-151 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 333 | 293 | - | – | |
| Gene3D | 228 | 313 | 86 | 5.0E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0026200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…