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LotjaGi5g1v0026300.1

Overview

Field Value
Gene ID LotjaGi5g1v0026300
Transcript ID LotjaGi5g1v0026300.1
Lotus japonicus genome version Gifu v1.2
Description Prolyl-tRNA synthetase associated domain-containing protein 1; TAIR: AT1G44835.2 YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein; Swiss-Prot: sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1; TrEMBL-Plants: tr|I1KA79|I1KA79_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0026300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4421450..4425517) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATGTAAAAAACCTAAATGCCCTTCACCAAATAGCGTGTGCTCGGTGGGATCTGTCGTTGTTGTTCTGCTCTGCAAT TGCAAAACGCTTTGATTCAGCCACCATCACCATTGTCGCCGCCCATGGGTCTCTCGAAGGAACAACTTCTAACGCAGTTA CAGGTTCGTTCTCTAATTCAACTGGGTATTTTCTTATTTGATCAGTGCCTCTGTTATTCATTACAAAGAAGTTGATTCAG CAGCAATTTGAATTGATTTGATTATGCAATTTGAGTTAGCCCTAGATTCAGCAGCAATTTTTTCATGCATGTCACTTCCT GCTTCAATATATCTTGTCTTGTTTCCCCAGGAGCTTCAAATTGAATTTTCCAAGTATGAGCATCCACTTGTTTTGACTGT TGAAGCCCAGGTAAAAGCTTATCTTGTATATCATGTTCATTGTTTTTGTCATTTTATTTTTATGATTCATTGTCTATTTT CCTTCAGGCAAAATATGTTGGAAATTTGGGGGGTGGCTTGAGTAAAAATTTATTTTTGAAGGTACGTTATATTTATTTTT GAAGGAAATCTATGTTTTTGTTACTTTTTTTATAATTGGTCATAATGCACATGCCCTGATAATTTAAACAGGACAAGAAA AGCAGGTTTTATGTCGTTTCCGCCTTAGCTGACACCAGGGTAGATCTCAAAGGTATGCGTAATTTTGTAAACGGAGTTTG TTCACATGCCTCACTTTAATGTATATCAATGAGATGTCTTTGTTGCTTCAAAGCTGAGCAGTGTTATCTCAGCGGCTTGG TTTGGGAAAAGGTGGTTTGAGAATGGCACCCGAAGAGGCTTTAGGTGAAATACTTCAGGTCTGTCTATGCCTTGTTCTAT CATTGACCGTGTGAAAATGACATGGTTGAAATTATTGTCTTACTTTCTTTTCCTTATCTCACAAGGTACCCTTGGGTTGC GTCACTCCATTTGCACTTGTAAATGAATCTGCACGGTATGCTTCTGTTTTACACTACTTGCTTACACAAATTTATTGCAA TATTATTCTTTGTTATTTATTTACTAAAGACATTTCCCTCTTTCAGTAATAAAATGGTGTTCTTTGAAATCCATCACCAA CAGAATCTCTTGTAGCTTTCTCTTCTATTCTTAAATTATTCTTTTCTATGTACTAGTTTTCTTATGAAGTTTCTTCTTTT GTTTAAGAATTTTCTACGAGTTCTGAATTTAAAGTTTGTGCTGCTTTTCAACCATAGGATATAAATTGATATTTTCTTGA ATGATGAACTGGATGTGTTGGATTGTTATTAATGTCTTGATCTTAGCAAACTACTTAATAGTGCACTGGCTTGTTGGAGG ATCGTCCTAGTTAGAAGTGTTCATGTTTTTGCGTATTATACTGTTCAAACATTGTTCTAATCCACGTAAAAAATCTATTT ATTAGGAACTAATGTATATTTTGTATGCCTCATCTTTTCCTTTCTGAAGAGATGTTTCACTGTTATTGGATCAAGGATTC AAGACACATGAGCATTGCTTCTTCCATCCACTGTCGAATGACATGTCCATATGTAAGTGATTAGAATCTTACAAGAGAAA TGTAGTTGCTCATGTTTTACTAACTCTTTTAAGTTCATTAAAATTCTATTGATGCAAACCCCTTAACTTGCGGAATATAT TTTTCTTGTATTCTTGTATCTAAAGTCTAAACACATTTGTAAATTGAATATTTATAGTATTTTGTGTCCAAATAACTTGT CCATAAGTTTTTTGTCCATGTCAGTTCTAATGTGCTTTGATTTAAAGTTCCATAAATTAATTAGAGTTACATCCTTTACA ATTGCAGCTCTAAATGCACGTGATCTTGACAGATTTCTTAAATCAATAGGAAGAGATCCCTCATATGTTGATTTAGAGGC GAGTGAATTTGAGCACCTGTTGTAGGTTTTGTTTACAATAATAAGTTCACCTATCATTCATTGATAATCTCATGTCTGTC TCATCTCCTTACAGGCCACTCCTACAGTGGGGAAAGATCAACCCCCGGATCTAGCTGCACTAGTTCCATCCGGTTCAATA GCTTTGCCTGATCAAGCAGAAAAACAATCATCTTCAGAAGTTCCCAAGGAAGGAAACACTGTTTCTGTCAGCAATAAACC CAAGACAGTTTCCGGTAAAAGTTCTATTGATTGGTGATTTGTTCTGTCTTAATTCATATATTATTTATATGAAAACAACA CCTGTTGTTTGAGCTGTCTTCTTTTCTACCATTTGGATAGTATTCACAGAGCATTGTACACCTAGTCACCTATATTTTGA TATTTATTTTTCTAAACGTGGATTACACTGTAACTGAAAATATTTTTTCTTTGCTTTTAGATTTAAAGCCTGAAAGCAAG CAATCTTATTAGGAATAAGTTATTATCTAGACCTCAGAAAACTAGTGGAGAGCCAGATTTGATAATCCCACTTAATGAGG TTGATATGAATTACAGTCCAAATACCTATGGAAAATGGAGAAAAGTTTTTTTATTTTGCTTATTTCTTTCTAGGAGCTCA GCTAACCCATCTGTATATTATATATACATTGCCTAAAGGCCTAATTGAACAGTTTGGTCGTCTACACAATTAAGCCTAAA TGCATAATGAAATATGTCACCTATAGCCTCCCTGCCTATAGGTATTGTTTCTGCGGATTTTCATTCTGTCAGCAATCAAT TTTGTGTTTCTCACCTTGACCATATGGCTCTGGGACAAGACAAGAGCTGATGGGAAAATTTATACCCAAATTTTATGTTC AAACCTTTTTAATTTGGTTTTGTTAAGTCCCTCTATTTTTTCTTGCCTAGAAACTCTAAATTGTCAGTTTCTACTTAAAT AATTTGGGGTCTTAGGATGAATTTGAGATACGAAATGATTTGAATAGCTCAGTTAGGAAATCTGGTGAAATTTTTCGTAA AATGTGAACTTTTTGTAGGAAATGAGGTTAGTGTTTCAAAGAGATATACATTTGAAATTTTCTCATTTATGTGAAATCAG ATGTTTTGATTTTGTGCTCCGGCTGAAATATCATGGTGATTGATTACATTAGTAATGAAGAGAAAATCTTTCTGATGCAG CCAAAGTTGTTAATCCATGCATTGTTGGGAACAATACTAAAGGAACACCAGTCAAGAACGTTTGTTCATCAGGCTCCTTC GCAGATGTTGGGAAATTCGTTGAAGAGATATTACAGAAGACATCAGAATTATTGCTTTCAGAGGTGAAAAAAATGTAAAC TTTCTTTGAAATTCAAACTTGAGCTGTACTTTCTGAATCATTTTAACAATCTTGATCATACAGATCAAGGAAGAAACTAT AGGTCTACACGGAGAGCAGCTGAGTGCTGTGGTATGCGACAAATTACAGAAAAACCTCAACTCAGATCTTAAAAATCTTG CTGTAAGTATTTGAAGATGTTGGTAAACTTTTTCTTTTCCTGAAAAGTTAAGCTTCCATTATAAGAAGACATGATTCTGA TCACCAGATTATCTTTATTGTAGATGATATTTAAGAACACTGCATACACAGAAGGGTTCCATGCTGGTACACAGCATCAG CCCACGCGCTGGTGAAGTTCAAAGATTAGATGATTCAGTATTTGCTGGCAGAAGAGTAAAGAGGGACCAAAATATTAACT GTATTTGTTAAATCTTTCGTTCATGCCAACACCATGCATTGTTTTTCAGACAGGGGAATGTTTGGTACCGAGTAGATTTG ATTAATGAAAAAAAGTCACAATTTTAAATAGAGTGGTGAATTGTAATTTAGTTGTCAAAAACTCAAAATATCAGTAAATT CTAACTTTGGTTATAAATTTACATTTCACGAGTAGTCCTTGAATGGTACAATCGCTAGTAATTTTGTCATTTCAAAATGT TTATGCTTTCAAATGAGATTTTTACAGTGCTAGTAATATAAAAAGTAATATTCATCGTTGAAATGTTTTACAGCAAACAG TTGTAGCGATTGAGTAGTTGGAAAATGCTTTGTACTTATGTTTTACAAAGTAATCATATTTTTTTAAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0026300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTCTCTCGAAGGAACAACTTCTAACGCAGTTACAGGAGCTTCAAATTGAATTTTCCAAGTATGAGCATCCACTTGT TTTGACTGTTGAAGCCCAGGCAAAATATGTTGGAAATTTGGGGGGTGGCTTGAGTAAAAATTTATTTTTGAAGGACAAGA AAAGCAGGTTTTATGTCGTTTCCGCCTTAGCTGACACCAGGGTAGATCTCAAAGTGTTATCTCAGCGGCTTGGTTTGGGA AAAGGTGGTTTGAGAATGGCACCCGAAGAGGCTTTAGGTGAAATACTTCAGGTACCCTTGGGTTGCGTCACTCCATTTGC ACTTGTAAATGAATCTGCACGAGATGTTTCACTGTTATTGGATCAAGGATTCAAGACACATGAGCATTGCTTCTTCCATC CACTGTCGAATGACATGTCCATATCTCTAAATGCACGTGATCTTGACAGATTTCTTAAATCAATAGGAAGAGATCCCTCA TATGTTGATTTAGAGGCCACTCCTACAGTGGGGAAAGATCAACCCCCGGATCTAGCTGCACTAGTTCCATCCGGTTCAAT AGCTTTGCCTGATCAAGCAGAAAAACAATCATCTTCAGAAGTTCCCAAGGAAGGAAACACTGTTTCTGTCAGCAATAAAC CCAAGACAGTTTCCGCCAAAGTTGTTAATCCATGCATTGTTGGGAACAATACTAAAGGAACACCAGTCAAGAACGTTTGT TCATCAGGCTCCTTCGCAGATGTTGGGAAATTCGTTGAAGAGATATTACAGAAGACATCAGAATTATTGCTTTCAGAGAT CAAGGAAGAAACTATAGGTCTACACGGAGAGCAGCTGAGTGCTGTGGTATGCGACAAATTACAGAAAAACCTCAACTCAG ATCTTAAAAATCTTGCTATGATATTTAAGAACACTGCATACACAGAAGGGTTCCATGCTGGTACACAGCATCAGCCCACG CGCTGGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0026300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLSKEQLLTQLQELQIEFSKYEHPLVLTVEAQAKYVGNLGGGLSKNLFLKDKKSRFYVVSALADTRVDLKVLSQRLGLG KGGLRMAPEEALGEILQVPLGCVTPFALVNESARDVSLLLDQGFKTHEHCFFHPLSNDMSISLNARDLDRFLKSIGRDPS YVDLEATPTVGKDQPPDLAALVPSGSIALPDQAEKQSSSEVPKEGNTVSVSNKPKTVSAKVVNPCIVGNNTKGTPVKNVC SSGSFADVGKFVEEILQKTSELLLSEIKEETIGLHGEQLSAVVCDKLQKNLNSDLKNLAMIFKNTAYTEGFHAGTQHQPT RW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31423
1 320 320 2.4E-149
IPR040285
Gene3D
G3DSA:3.90.960.10
3 171 169 8.6E-56
IPR036754
SUPERFAMILY
SSF55826
4 164 161 5.49E-42
IPR036754
CDD
cd04335
17 162 146 4.75174E-62 –
Pfam
PF04073
24 151 128 8.0E-26
IPR007214
MobiDBLite
mobidb-lite
191 212 22 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0002161
Molecular function Aminoacyl-tRNA editing activity The hydrolysis of an incorrectly aminoacylated tRNA.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0026300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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