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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0026400 |
| Transcript ID | LotjaGi5g1v0026400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerases I, II, and III subunit rpabc3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T3I9|I3T3I9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0026400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4426178..4429849) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATATTAAATAAGCACTCCTTATATATATTGGATAGGGGCAAAGTCAGGGTTTTTATTCGTGCAGCAAGACGTGAGT GAGCTTCAAAACGCACCCAAACCCTTTCCTTCACGTTCAGTCACAGCCACCACGTCGTGCTCCCTCGTCCCTCCGTGTTC TCTTCCTTCGCCACAGGTAAGGTAGGTGCTTCACTTCCTTTTCTCTGTTTCGTCACTCTTCTCAAATGCAAGATTATGTA GATTTCACTCTTTGCACACAAACTGTTTGAAAAAATGTTTGTCATGAATTATACCTTATGATTTCACTCTTCAAATATTC CCTGATTGAATTTTTCTCCTGAAATTATGTTGCTGGGTTTGTTATAAGCTAAAGACCTTTTCTATGTTGGTTTGAGGGAG TATGTTATAGCTTTTACAATTTTGTTCTTGTACTTTTCAGGGAGCAGCTACAGTTTTCACTGCTAGTGCCTTGTCTCACA TATACCTTAGTATTGGGTTGAAATACCCCTTGTACTTATTAATATATTTTGGCTTTTCAAAAATAAAATAAAATGGGTAA ACCTACTCAAGTAATAGAACAGCTTGTTTTAAGCCAAGATGGAAGGACCAAATAAAATAAAAATTAAGAAAGATGCATAG AAAGATGGACATGAATTTATATGTCAAGGGTTCTAGTTTTATTCTTTTAAATTGCACAATGATTTATAAGTAGCTTATTA GATTCATATTAGTTCAAATTTTGCACCTCAGTATTTCTGCATAAGGGTCCATTCTGAAATAAAATGAGGTATAAATAGTA TGGTGCTCTTCCTCTAATTTCTTGTGTTTATTTTCTCTGCTCAGTCTGAGGCTGCTTTCTTCTGATCTGTGCACCAAATT TACTCTTGAAGGATGAGTGAGATTTTTTTTGATGACATTTTTAAGGTTGAGAATCTAGACCCAGATGGTAAAAAGTATGA CAAAGGTATGTTCACCTCGTACTTATTGTACTAGAATTGTTGCAGATGGATGGATTATATGAATTGTCAGGCTTCATTTG TAGAGGAATTGTAACATATGATGTGAGTAAATCATATTATATATTGAGCAAAATTCAGTTAAGCAAATGGAGGAAAAATG AAGTTTTTCTTTTGCTCCAAGAGTGTGCACTTACTGATATAAGAATTATGAATCTATGAATAGTCTAGTATATGATTATA AAAACTATCACTACTTTGGATGCTAATATGGCAGTTCATTATAGAGATCGGCAATGAAATTGCATATAGTTTTAGCAATC AAGTGTTATACAATTTGCAATATTTTTACTCTTTTTCAGATGTTGTTTTGATAGATACTGAATCCATGTTGTTTTTTACA TGCTTTGCAAACATTTAGTGATGTGGCCTAGTTATCCTGTGTTATATGTGTGCTTTCCTCCTGTTTACATTCTTCTGAAA TTTGAATTAATTAAGTGTTTGTTTAGATGGCATGAGCTTTATAGTTTCATGACTATTTTCATGTAGTTTCTCGGATTGAA GCACGAAGTGAGAAGCGTGACATGTACATGCTTCTAGATGTAAATACAGAGATTTATCCTATGAAAGAAAATGAAAAATT CTTGATGGCTCTGTCTCCGTCACTTGTTTTGAATACTAAGGTAAACTGAATTCTCTTTTCACTTTCAATTTCGTGCTTTA TAGTAGACAATATGAACTTAGTTGTCTTCTTTGCTCAAATAAGTTATTATCTAGATACTCCAACTCTAATATAGACTTCA TTATCTACTTGATCATTCGTTGGTCTTTCCTAAAAGCCATGCTTTTAATCTCACATATGTAGAGCTGCTTTCTGCTGGTG CTAACATATCAGTTTCTCATTTGTTTTTGATAATTGGATCTTAAATTTGGCATAATTCCTACTGGAATGTAGATTTCCTA AATTTAGCAGAATGGACTGGTTCAGAATGACTAGGCACCGAGTTAAATGTATTCCATGCATTGAAATATAGAATTCCAAT TTGCAGTTGACCATGCGGAGAAATATCCAAAAAATGACTGTTACCTAGTAAACTCGTTGGAAAATAAATAAAACCACTGT GGTCTCTTTAATTTGTTACTCCCAAATTGTCTGCCTGCAAATGCTTATATTTTGAAGCTGGAACTAATTATTCGAATGTC TGTAAAGGATCAACAAATTATAGATGGTTAAGGATTTTTTGATGTGATAACTGATAAGTAAGAAGTAATGAAAAATTTAT CAGGCTGTTTTAAATTTTATGTAATAAACTACAATAAAATTTTTATGTTAAAGCGAGTTTATCACAGTTAGGATCATGTT AATTTTATGTTATGTACAACAAATATATCTGTAAAGTAGTTTTACTGATTTTAGCTGTCTTAGAAGTAGCAGATATTGCC TTAACACTGAATTGATTTCTTCTCCAGGATGGCTCAGTGCCAATTCACGAAAAGTTTGAATACATCATGCATGGAAGGCT ATATAACATCACAAATGATGAAAAATCTCAGCATGAAGTGTATGTAAACATTTCCCATGTTGTTTTACTCTTTCTTTTCA TTAGAATCACCATAGAATTTTGACTAGCATGTTCAGTGGTTTGCCATTAGGAATAATTTATGATAGGACCTTATAACATT GTAATCTATGGTGCTATAAGATAAGTTCAAATAAGCTCTTCCAAACGGGTCATGTAGCTTTTTGCTAAATGGGGTTGTAT CTTAGTTAATACTATTATTGGATTGCTAGCAACCCAATATGGGAAACATTGGAGGATCCTCTGGGATGTAAGGATAGCCT ATCTGCAATTTTTTATACATTCTTATTGTTGATATCAATGGGGTTTCTTCTGTTATTTAATTTTCTTTGAGGGAATACAT GAATCTATTAGTTTTATTTTTGTTTATGAGATTGGTCAATTCTCTTAGTTTTTTTCTTGTTTCAGGGAGGTATATGCATC ATTTGGTGGGCTTCAATTGATGCTGAGAGGACACGTTTCCCATTGTGTAAAGCTTGCAGTCGATCAGAAGTTGTTTTTGC TTATAAGGAAGATTGAAAGTTGAAACTACTGATGTTGGTGATGGCTGAGAAGATGAACATGCTAGCATTAAATATTGTTT ATGATCTTGCATTGGTTCTTTAAAAATTTTGAGCAGAATGTATTTTGAAAGACTTGCATGTTCTCTCTATTATTTTCTGT ATGAATTGGATGAAAGAATGAGCGGAATGTTTTTTTTTGTTATACTATTTAGATAAAATCATTGTTGTCAAACTTGGGAG TCAAGTTGTAGACTCGACGAGTTTGAGTTTACATAGCAAAATCGAGTTAACTAATTGGTAAGCACATTTTTTGCTTGACT TGAGCAAGCTCACATAGAATATTAAACATGAAGAGAATTGTGCATGCTGCCGCCGCTGTTCTTTGTGAGAAGCTCTCTAC TGTCCTCCTCGCACCCTGCCAGTGAGTGACGTGAGTCTTGACTTGGTAATGGGGTGTTTTCTCTTGGCTAAAGTGCTGGA TGTCTTGGCAGTGGTGGGGAAGAAACAAGGGAGAAGGAAGGCAATGGATGTAGATGGTCATGGTAGTGGTAGAATGGAAC GTCTTTCATTCAAACACCACACAACTTCGAGCCCAATTAAAAAATCAACTACATACATCACACCTTCCACCT
CDS sequence (LotjaGi5g1v0026400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGAGATTTTTTTTGATGACATTTTTAAGGTTGAGAATCTAGACCCAGATGGTAAAAAGTATGACAAAGTTTCTCG GATTGAAGCACGAAGTGAGAAGCGTGACATGTACATGCTTCTAGATGTAAATACAGAGATTTATCCTATGAAAGAAAATG AAAAATTCTTGATGGCTCTGTCTCCGTCACTTGTTTTGAATACTAAGGATGGCTCAGTGCCAATTCACGAAAAGTTTGAA TACATCATGCATGGAAGGCTATATAACATCACAAATGATGAAAAATCTCAGCATGAAGTGGAGGTATATGCATCATTTGG TGGGCTTCAATTGATGCTGAGAGGACACGTTTCCCATTGTGTAAAGCTTGCAGTCGATCAGAAGTTGTTTTTGCTTATAA GGAAGATTGAAAGTTGA
Protein sequence (LotjaGi5g1v0026400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEIFFDDIFKVENLDPDGKKYDKVSRIEARSEKRDMYMLLDVNTEIYPMKENEKFLMALSPSLVLNTKDGSVPIHEKFE YIMHGRLYNITNDEKSQHEVEVYASFGGLQLMLRGHVSHCVKLAVDQKLFLLIRKIES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 136 | 136 | 1.2E-58 | – | |
| PIRSF | 1 | 137 | 137 | 1.7E-41 | ||
| PANTHER | 1 | 136 | 136 | 1.2E-58 | ||
| SMART | 2 | 135 | 134 | 7.1E-44 | ||
| SUPERFAMILY | 3 | 135 | 133 | 1.47E-35 | ||
| Gene3D | 6 | 138 | 133 | 1.6E-43 | – | |
| Pfam | 7 | 135 | 129 | 2.3E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi5g1v0026400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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