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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0026500 |
| Transcript ID | LotjaGi5g1v0026500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Origin recognition complex subunit 2; TAIR: AT2G37560.1 origin recognition complex second largest subunit 2; Swiss-Prot: sp|Q38899|ORC2_ARATH Origin of replication complex subunit 2; TrEMBL-Plants: tr|A0A151S7Y3|A0A151S7Y3_CAJCA Origin recognition complex subunit 2; Found in the gene: LotjaGi5g1v0026500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4431641..4435862) extracted from Lotus japonicus Gifu genome v1.2.
TGTGCACCTACTTTCTGTGGATTACGCGCTTAATCAGATAAGAAATGGCGGGAAAAACGTCTAGGGCAAAAGAGCAAGTG CATAGTAACACACAGAATCGTTCTCCTCTGCCGCTAGCCAACGCAGTCTCAACCGCCGCCGTCCGCCGCGCTCCTCCTCG CAGACGACGTCACCGTCGCACTTCATTCTGGTTGGTCGTGCTTTCTTCAGACTGTCTGTGTCTATTTTTCTTCTGGTTTT GAAATTCATCTGGGATGCTATTTGTCTGCTTCTAGCTTCTGGCTTAGATGGGTATGATTGCAGATTTTAGGTTTAGTTTT GAGGGGTGATGATGTCGCTATATTAATCAGCTTTTATTTCTTTTGCATTTGTTTTGAATCAAAATTGTAGGAATTGCACA TCAACTTAGATCTAATTCCTCTGCTACTGGTTATAATGAATCAGATTGGAAACCCCTCATTACCTCCATGATTGATAAGA ATGTGACTCTGTTTTTGTTTAGTCTTCAATTAATTAACAAGCTTAGGAACATTGGGGCACCTACTGATTTCATTGAAGAT GTTGATCACTCATGTTTGTCACCAAGTGTTTTGTAGGACTAGCTAGTAGCATAATATCAAGAAAACATGTCGAATGCTCA TTCACCTCAATAGAGGAACTATGCCATGAAATGTATGTCTTGATTCTTGACCATATGGTGACAGATTGACGGTAAACCAA GCATACCGATTGCTATTGAATAGAAATTATAATTGCTTCTAATTTTGAACACAAGTTGCTGCCTGACATAACTGGTATTG CCTCTTTGAACAAATTGCAAACCAATTGCTATTTTGGGTTTGAAAATGTTTGATGTTTTCGTTTAATTAGGTACTTGTGG GATGATCATTATTTTTGAATTAGGAGTATGGACTTGTTTAATTATGTTGAATTAAAATACTAATAATAATTTTGCATTTC ATTTCAGTGCAGTTTACTTTTTCTCATAGACTGATCAATGGACAACAATGGCAATTGGGCGGAGGAAAAGGAGGAGGACG AGGAAGAGTACGAATTCTCAAGAAATTATTTCCTGGCGAAGGAATTGGCATCCTCGGTGAAGAAATCGAAACAAAAGATT ACCGACATCAACGTTGTTGATGAACAGGTACCTATTGTAAATGCCCTGGTTGTTCTTGTTTGGTTCCCACTCCATTCTCT CAAATTTCCGCTTCTAGCTTTACCTTGGGTTTTCGTATGTGACTAGGAATTGAGGGAAGCTGCATTGCACATTCAACCCA AGCATGAAAATGAGATTGCCCTCTTAATGGATTCCTATAAAGCTATGTATCCTGAATGGCTTTTTGCGCTAAAGTATGCA TCTGTTCCCATCCCCATCAACTTCTGTTATATTTATACTCCATGCATATTTGAAAGTTCTTCTACAATTGATTTATAAAG TCAAATTCAATTATGCGAAAAAATTTCTGTAACTAGCTTTTGAGTACTAAAATTTATTATGTTGAAAAAGAAGTTGATCC AAAAATGTTATCGTTCATTGTTGTGTCATAGCTAGACACACACACACACACACACACATATAACTTTGTTTGAGTAATGT TTTTTAAGGATATGCAGTTTTAAGTTTCTTAATCTTGGTAATATTGTATGAACTTAAATTTATTTTTGTTACATCATTGA GGTCAGGTGTGGTTTTGGTCTTCTAATGTATGGTTTTGGGTCTAAGAAGGCTATGATTGAAGATTTTGCTTCAAGGGCAC TGGCTGAATATTCTGTAGTTGTCATTAATGGGTATCTTCAGACCATTAACTTAAAACAGGTTTGTTTCCCTCACTGATAT CATACCTTCCCAAATAAGTACGTAATGATAACTCTTTTGAGGGGAAATTAAAGGCGCAAAAAGGAGATAAATAAAATTTT GTCGGAAGGGCGTTAAGTGTTCTGCCTGCGCTGTCAAGCTTGTTCTCATCATGCATAGCTGCTCACTAGTGTTTTTAGTT TTGATGTGTTAGGTTGTGGTAGCTTTAGCTGATCTTCTGTGTGATTACATGAAAACTAAACGGAGGGTTTCCACTCGGGA CTTGCCCAAGAGTCAGCAGCCATACAATTCTCAATCCATGGATGATCTTCTTACATTTTTGGATGAAGTGGAATTAGAGG ATGGTGATTGTTTTGTTTGTGTTGTCATTCACAATATTGATGGACCTGGGTTGAGGGACTATGAAACACAACAATATCTT GCTCGCCTGGCTGCTTGTACCCATATTCGTATTGTTGCATCTATTGACCATGTTAATGCCCCACTGTGTAAGTTTACTGA ATACTGTCAGTCTGCCACATTTTCTAGTGCAGAATATATTATTCTTGTAAGTTGTTAGTGTAGTTAATATTGTCTTATTT CATTTCTAGTTATGCTTCAAACTTATGTATACTCGAATTATTTTTCCAAGGTTTGAATTGTTCTATTTTGAGTTTTTGAA CTCTGAATAGAAGCTTTAATCTGTAATCTGTTATTAGTGTTTAATATCAGGTACTTTGTTATTAAGTTACTACAAAAAAA TTTAAACGTCTTCACAAACATATTATTCAAATTTTTGTTTGATCCATGCTGCTTATTTATATTATTGGAGGTCTTCTAAG GCTCTGATCCTATCTTCTCTATGTTTAGCTGGGCAATAGGACTAAGTGTATACCTCTTCAGAAGTTTGTTTTGGTATCTG GACTTGCTGTATTTTTTATTTTCAGTTTGTGCTTTAAAGTTAGATGTAGGAGAAATGAATGAATAGATAAGGTGAGAAAT GATTATACTGGGGAAAGTAGGAGTAGGCGAGTAGCACATACTGAAGTAAAGATGATAGAATGACATCTAAGCTGGTTTGG TCAGGTGAGATAAAGACCAATAGTGATAATAGTTGATCAAGTGGAAAATAGCCTTAATAGTTAGAGTAAGAAGATGAGAA ACACTTCTAAATCCTAATATTACTATTGACTTGGATCTAAATGGTTGCTTCTAAGACTTGGTTTTGATAAAATATAATGA TGTCATTTAATCTATGAAGCTGACTCAACTTAGAAGAAATGACTTTTTTGTTTGTTGACGTAGTAGGAAAAAAATGAAGG ATGTGTGACTCTGATATTTTTATTTTTTATTTTTTTTGGTTGCCTCTGTCTTTCTTAACAGTTTCATCTTTTGTTGGCAG ATTGGGACAAGAATATGGCTCATACACAGTTCAACTGGAGCTGGTATCATGTCCCTACTTTTTCTCCGTATAAGGTTGAA GGCATGTTTTATCCGATGATTCTCGCACATGGCAGTGCCAGCCAGACTGTCAAAACAGCTACAATAGTTTTGCAAAGTTT GACGCCCAATGCTCAGAGTGTATTCAAAGTCCTTGCTGAACATCAACTCTCTCATCCTGAAGAAGGCAAGTATCTATTAT TTTAGTTGTATGTTGTTCTTTTCATATTTATACAACAACAACGAATCCTTTTCCATACAGCGCCATAAAACTTAATCATG TATTAAATTTAAAGATAGACTGTTTATCTCTAGATTTATCTGAATGATTTGGCTTATGCTTTTTGATTAGTAAAATGTTA TTTTCTTTTTCAGGAATGCCCATCAGTGATCTTTACTCAGTCTGTCGAGAACGTTTCCTTGTTAGCAGTCAGGTTACTCT GAATTCTCATTTGACTGAATTTAAAGACCATGAGCTGGTCAAGATCAAGAGGCATACCGACGGCCAGGATTGCTTGTACA TCCCTCTGGCTGCAGAAGCACTTCAGAAAGTTCTGCTAGAGATCAATTAGTACTGGGGCATTATGATTCAAAAGAAAGGG AACGAATAAGCAAATTAGTTCATACAGTGCCACACGCATTGCTTATTGTCTGAAGCTTGTTTCAGATGGGAGCATAATGT TTGTGTTTTCATCCTAGTTTTACAACAAAATTTTAAGTGAAAACATATACCCCTGACTGCTGCGAATACAACTCCAAAAA ACATATTTGGATAAGCAAATTAGTTCATACAGTGCATTTTTCCAAAGTGGATGATAGACATGCATTACTTATTGTCTGAG GCTTGTATCTATTGGAGCCTAATGTTTGTGTTTTCATACTAGTTTTAAAACAATTTTAAGGGAAAACATACCCCTGCAGC GAATCCAACTCCAAAAACACATTTGGATTTTCTTCTGTAAAATCCTGCATTCACGCATTCAA
CDS sequence (LotjaGi5g1v0026500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACAATGGCAATTGGGCGGAGGAAAAGGAGGAGGACGAGGAAGAGTACGAATTCTCAAGAAATTATTTCCTGGC GAAGGAATTGGCATCCTCGGTGAAGAAATCGAAACAAAAGATTACCGACATCAACGTTGTTGATGAACAGGAATTGAGGG AAGCTGCATTGCACATTCAACCCAAGCATGAAAATGAGATTGCCCTCTTAATGGATTCCTATAAAGCTATGTATCCTGAA TGGCTTTTTGCGCTAAAGTGTGGTTTTGGTCTTCTAATGTATGGTTTTGGGTCTAAGAAGGCTATGATTGAAGATTTTGC TTCAAGGGCACTGGCTGAATATTCTGTAGTTGTCATTAATGGGTATCTTCAGACCATTAACTTAAAACAGGTTGTGGTAG CTTTAGCTGATCTTCTGTGTGATTACATGAAAACTAAACGGAGGGTTTCCACTCGGGACTTGCCCAAGAGTCAGCAGCCA TACAATTCTCAATCCATGGATGATCTTCTTACATTTTTGGATGAAGTGGAATTAGAGGATGGTGATTGTTTTGTTTGTGT TGTCATTCACAATATTGATGGACCTGGGTTGAGGGACTATGAAACACAACAATATCTTGCTCGCCTGGCTGCTTGTACCC ATATTCGTATTGTTGCATCTATTGACCATGTTAATGCCCCACTGTATTGGGACAAGAATATGGCTCATACACAGTTCAAC TGGAGCTGGTATCATGTCCCTACTTTTTCTCCGTATAAGGTTGAAGGCATGTTTTATCCGATGATTCTCGCACATGGCAG TGCCAGCCAGACTGTCAAAACAGCTACAATAGTTTTGCAAAGTTTGACGCCCAATGCTCAGAGTGTATTCAAAGTCCTTG CTGAACATCAACTCTCTCATCCTGAAGAAGGCAAGTATCTATTATTTTAG
Protein sequence (LotjaGi5g1v0026500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNGNWAEEKEEDEEEYEFSRNYFLAKELASSVKKSKQKITDINVVDEQELREAALHIQPKHENEIALLMDSYKAMYPE WLFALKCGFGLLMYGFGSKKAMIEDFASRALAEYSVVVINGYLQTINLKQVVVALADLLCDYMKTKRRVSTRDLPKSQQP YNSQSMDDLLTFLDEVELEDGDCFVCVVIHNIDGPGLRDYETQQYLARLAACTHIRIVASIDHVNAPLYWDKNMAHTQFN WSWYHVPTFSPYKVEGMFYPMILAHGSASQTVKTATIVLQSLTPNAQSVFKVLAEHQLSHPEEGKYLLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 301 | 293 | 1.4E-108 | ||
| Pfam | 37 | 300 | 264 | 2.6E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Origin recognition complex | A multisubunit complex that is located at the replication origins of a chromosome. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi5g1v0026500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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