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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0026500 |
| Transcript ID | LotjaGi5g1v0026500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Origin recognition complex subunit 2; TAIR: AT2G37560.1 origin recognition complex second largest subunit 2; Swiss-Prot: sp|Q38899|ORC2_ARATH Origin of replication complex subunit 2; TrEMBL-Plants: tr|V7CRT8|V7CRT8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0026500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4431778..4435802) extracted from Lotus japonicus Gifu genome v1.2.
GCCGTCCGCCGCGCTCCTCCTCGCAGACGACGTCACCGTCGCACTTCATTCTGGTTGGTCGTGCTTTCTTCAGACTGTCT GTGTCTATTTTTCTTCTGGTTTTGAAATTCATCTGGGATGCTATTTGTCTGCTTCTAGCTTCTGGCTTAGATGGGTATGA TTGCAGATTTTAGGTTTAGTTTTGAGGGGTGATGATGTCGCTATATTAATCAGCTTTTATTTCTTTTGCATTTGTTTTGA ATCAAAATTGTAGGAATTGCACATCAACTTAGATCTAATTCCTCTGCTACTGGTTATAATGAATCAGATTGGAAACCCCT CATTACCTCCATGATTGATAAGAATGTGACTCTGTTTTTGTTTAGTCTTCAATTAATTAACAAGCTTAGGAACATTGGGG CACCTACTGATTTCATTGAAGATGTTGATCACTCATGTTTGTCACCAAGTGTTTTGTAGGACTAGCTAGTAGCATAATAT CAAGAAAACATGTCGAATGCTCATTCACCTCAATAGAGGAACTATGCCATGAAATGTATGTCTTGATTCTTGACCATATG GTGACAGATTGACGGTAAACCAAGCATACCGATTGCTATTGAATAGAAATTATAATTGCTTCTAATTTTGAACACAAGTT GCTGCCTGACATAACTGGTATTGCCTCTTTGAACAAATTGCAAACCAATTGCTATTTTGGGTTTGAAAATGTTTGATGTT TTCGTTTAATTAGGTACTTGTGGGATGATCATTATTTTTGAATTAGGAGTATGGACTTGTTTAATTATGTTGAATTAAAA TACTAATAATAATTTTGCATTTCATTTCAGTGCAGTTTACTTTTTCTCATAGACTGATCAATGGACAACAATGGCAATTG GGCGGAGGAAAAGGAGGAGGACGAGGAAGAGTACGAATTCTCAAGAAATTATTTCCTGGCGAAGGAATTGGCATCCTCGG TGAAGAAATCGAAACAAAAGATTACCGACATCAACGTTGTTGATGAACAGGTACCTATTGTAAATGCCCTGGTTGTTCTT GTTTGGTTCCCACTCCATTCTCTCAAATTTCCGCTTCTAGCTTTACCTTGGGTTTTCGTATGTGACTAGGAATTGAGGGA AGCTGCATTGCACATTCAACCCAAGCATGAAAATGAGATTGCCCTCTTAATGGATTCCTATAAAGCTATGTATCCTGAAT GGCTTTTTGCGCTAAAGTATGCATCTGTTCCCATCCCCATCAACTTCTGTTATATTTATACTCCATGCATATTTGAAAGT TCTTCTACAATTGATTTATAAAGTCAAATTCAATTATGCGAAAAAATTTCTGTAACTAGCTTTTGAGTACTAAAATTTAT TATGTTGAAAAAGAAGTTGATCCAAAAATGTTATCGTTCATTGTTGTGTCATAGCTAGACACACACACACACACACACAC ATATAACTTTGTTTGAGTAATGTTTTTTAAGGATATGCAGTTTTAAGTTTCTTAATCTTGGTAATATTGTATGAACTTAA ATTTATTTTTGTTACATCATTGAGGTCAGGTGTGGTTTTGGTCTTCTAATGTATGGTTTTGGGTCTAAGAAGGCTATGAT TGAAGATTTTGCTTCAAGGGCACTGGCTGAATATTCTGTAGTTGTCATTAATGGGTATCTTCAGACCATTAACTTAAAAC AGGTTTGTTTCCCTCACTGATATCATACCTTCCCAAATAAGTACGTAATGATAACTCTTTTGAGGGGAAATTAAAGGCGC AAAAAGGAGATAAATAAAATTTTGTCGGAAGGGCGTTAAGTGTTCTGCCTGCGCTGTCAAGCTTGTTCTCATCATGCATA GCTGCTCACTAGTGTTTTTAGTTTTGATGTGTTAGGTTGTGGTAGCTTTAGCTGATCTTCTGTGTGATTACATGAAAACT AAACGGAGGGTTTCCACTCGGGACTTGCCCAAGAGTCAGCAGCCATACAATTCTCAATCCATGGATGATCTTCTTACATT TTTGGATGAAGTGGAATTAGAGGATGGTGATTGTTTTGTTTGTGTTGTCATTCACAATATTGATGGACCTGGGTTGAGGG ACTATGAAACACAACAATATCTTGCTCGCCTGGCTGCTTGTACCCATATTCGTATTGTTGCATCTATTGACCATGTTAAT GCCCCACTGTGTAAGTTTACTGAATACTGTCAGTCTGCCACATTTTCTAGTGCAGAATATATTATTCTTGTAAGTTGTTA GTGTAGTTAATATTGTCTTATTTCATTTCTAGTTATGCTTCAAACTTATGTATACTCGAATTATTTTTCCAAGGTTTGAA TTGTTCTATTTTGAGTTTTTGAACTCTGAATAGAAGCTTTAATCTGTAATCTGTTATTAGTGTTTAATATCAGGTACTTT GTTATTAAGTTACTACAAAAAAATTTAAACGTCTTCACAAACATATTATTCAAATTTTTGTTTGATCCATGCTGCTTATT TATATTATTGGAGGTCTTCTAAGGCTCTGATCCTATCTTCTCTATGTTTAGCTGGGCAATAGGACTAAGTGTATACCTCT TCAGAAGTTTGTTTTGGTATCTGGACTTGCTGTATTTTTTATTTTCAGTTTGTGCTTTAAAGTTAGATGTAGGAGAAATG AATGAATAGATAAGGTGAGAAATGATTATACTGGGGAAAGTAGGAGTAGGCGAGTAGCACATACTGAAGTAAAGATGATA GAATGACATCTAAGCTGGTTTGGTCAGGTGAGATAAAGACCAATAGTGATAATAGTTGATCAAGTGGAAAATAGCCTTAA TAGTTAGAGTAAGAAGATGAGAAACACTTCTAAATCCTAATATTACTATTGACTTGGATCTAAATGGTTGCTTCTAAGAC TTGGTTTTGATAAAATATAATGATGTCATTTAATCTATGAAGCTGACTCAACTTAGAAGAAATGACTTTTTTGTTTGTTG ACGTAGTAGGAAAAAAATGAAGGATGTGTGACTCTGATATTTTTATTTTTTATTTTTTTTGGTTGCCTCTGTCTTTCTTA ACAGTTTCATCTTTTGTTGGCAGATTGGGACAAGAATATGGCTCATACACAGTTCAACTGGAGCTGGTATCATGTCCCTA CTTTTTCTCCGTATAAGGTTGAAGGCATGTTTTATCCGATGATTCTCGCACATGGCAGTGCCAGCCAGACTGTCAAAACA GCTACAATAGTTTTGCAAAGTTTGACGCCCAATGCTCAGAGTGTATTCAAAGTCCTTGCTGAACATCAACTCTCTCATCC TGAAGAAGGCAAGTATCTATTATTTTAGTTGTATGTTGTTCTTTTCATATTTATACAACAACAACGAATCCTTTTCCATA CAGCGCCATAAAACTTAATCATGTATTAAATTTAAAGATAGACTGTTTATCTCTAGATTTATCTGAATGATTTGGCTTAT GCTTTTTGATTAGTAAAATGTTATTTTCTTTTTCAGGAATGCCCATCAGTGATCTTTACTCAGTCTGTCGAGAACGTTTC CTTGTTAGCAGTCAGGTTACTCTGAATTCTCATTTGACTGAATTTAAAGACCATGAGCTGGTCAAGATCAAGAGGCATAC CGACGGCCAGGATTGCTTGTACATCCCTCTGGCTGCAGAAGCACTTCAGAAAGTTCTGCTAGAGATCAATTAGTACTGGG GCATTATGATTCAAAAGAAAGGGAACGAATAAGCAAATTAGTTCATACAGTGCCACACGCATTGCTTATTGTCTGAAGCT TGTTTCAGATGGGAGCATAATGTTTGTGTTTTCATCCTAGTTTTACAACAAAATTTTAAGTGAAAACATATACCCCTGAC TGCTGCGAATACAACTCCAAAAAACATATTTGGATAAGCAAATTAGTTCATACAGTGCATTTTTCCAAAGTGGATGATAG ACATGCATTACTTATTGTCTGAGGCTTGTATCTATTGGAGCCTAATGTTTGTGTTTTCATACTAGTTTTAAAACAATTTT AAGGGAAAACATACCCCTGCAGCGA
CDS sequence (LotjaGi5g1v0026500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACAATGGCAATTGGGCGGAGGAAAAGGAGGAGGACGAGGAAGAGTACGAATTCTCAAGAAATTATTTCCTGGC GAAGGAATTGGCATCCTCGGTGAAGAAATCGAAACAAAAGATTACCGACATCAACGTTGTTGATGAACAGGAATTGAGGG AAGCTGCATTGCACATTCAACCCAAGCATGAAAATGAGATTGCCCTCTTAATGGATTCCTATAAAGCTATGTATCCTGAA TGGCTTTTTGCGCTAAAGTGTGGTTTTGGTCTTCTAATGTATGGTTTTGGGTCTAAGAAGGCTATGATTGAAGATTTTGC TTCAAGGGCACTGGCTGAATATTCTGTAGTTGTCATTAATGGGTATCTTCAGACCATTAACTTAAAACAGGTTGTGGTAG CTTTAGCTGATCTTCTGTGTGATTACATGAAAACTAAACGGAGGGTTTCCACTCGGGACTTGCCCAAGAGTCAGCAGCCA TACAATTCTCAATCCATGGATGATCTTCTTACATTTTTGGATGAAGTGGAATTAGAGGATGGTGATTGTTTTGTTTGTGT TGTCATTCACAATATTGATGGACCTGGGTTGAGGGACTATGAAACACAACAATATCTTGCTCGCCTGGCTGCTTGTACCC ATATTCGTATTGTTGCATCTATTGACCATGTTAATGCCCCACTGTATTGGGACAAGAATATGGCTCATACACAGTTCAAC TGGAGCTGGTATCATGTCCCTACTTTTTCTCCGTATAAGGTTGAAGGCATGTTTTATCCGATGATTCTCGCACATGGCAG TGCCAGCCAGACTGTCAAAACAGCTACAATAGTTTTGCAAAGTTTGACGCCCAATGCTCAGAGTGTATTCAAAGTCCTTG CTGAACATCAACTCTCTCATCCTGAAGAAGGAATGCCCATCAGTGATCTTTACTCAGTCTGTCGAGAACGTTTCCTTGTT AGCAGTCAGGTTACTCTGAATTCTCATTTGACTGAATTTAAAGACCATGAGCTGGTCAAGATCAAGAGGCATACCGACGG CCAGGATTGCTTGTACATCCCTCTGGCTGCAGAAGCACTTCAGAAAGTTCTGCTAGAGATCAATTAG
Protein sequence (LotjaGi5g1v0026500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNGNWAEEKEEDEEEYEFSRNYFLAKELASSVKKSKQKITDINVVDEQELREAALHIQPKHENEIALLMDSYKAMYPE WLFALKCGFGLLMYGFGSKKAMIEDFASRALAEYSVVVINGYLQTINLKQVVVALADLLCDYMKTKRRVSTRDLPKSQQP YNSQSMDDLLTFLDEVELEDGDCFVCVVIHNIDGPGLRDYETQQYLARLAACTHIRIVASIDHVNAPLYWDKNMAHTQFN WSWYHVPTFSPYKVEGMFYPMILAHGSASQTVKTATIVLQSLTPNAQSVFKVLAEHQLSHPEEGMPISDLYSVCRERFLV SSQVTLNSHLTEFKDHELVKIKRHTDGQDCLYIPLAAEALQKVLLEIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 367 | 359 | 6.3E-141 | ||
| Pfam | 37 | 358 | 322 | 1.4E-93 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Origin recognition complex | A multisubunit complex that is located at the replication origins of a chromosome. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi5g1v0026500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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