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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0026800 |
| Transcript ID | LotjaGi5g1v0026800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT1G46768.1 related to AP2 1; Swiss-Prot: sp|Q8LC30|RAP21_ARATH Ethylene-responsive transcription factor RAP2-1; TrEMBL-Plants: tr|Q7Y0Y9|Q7Y0Y9_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi5g1v0026800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4472053..4473433) extracted from Lotus japonicus Gifu genome v1.2.
TGATTCGAGGGTCAAGTGTGTGGTTGGGTCTGAAAGGAATCTCTCTTAAGTTGTTCTATAAAATCAAATATTTGAAGATC ACTTCAAAAAAGAAAGATAAGATATGTTCTAGCTATTTATATAGTATATATAGTTTTTTATAGTTACTTGATAGGTATAG AGGTAGTTAATTTCGTAGCTAAATGATGGAGGACAGGGATTATTGTTGTTCCACCATGAATTCAACCGCCACAAGAACCA GAATCAGCAGCACCAAAGAGAAAGGGATCACAAAGCAAAACCAATTAGAGAAACCAATGAAACCATACAGAGGGATAAGG ATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATCAGAGAGCCCAACAAGAGGTCGAGGATCTGGCTGGGATCCTACACCAC CCCTGTCGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTGCCTCAGAGGCCCCTCAGCACGCCTCAACTTCCCGGAAT TGCTTTTCCAAGACCAAGATAAGGATGGTGGTGATGGTGATGGCGGTGGCGGTTCCATCCAACAAGGGAACATGTCTGCT GATTCAATACGCAAAAAAGCAACACAAGTTGGTGCTAGAGTGGATGCTCTCCAAACGGCTCTTCATGGTTCTTCACTACA CTCCTCTTCCAACACTTCCTCCTTGAAGCCTGATTTGAATGAGTTTCCAAAACCTGAAGAAGATTGCCTTGAAGCACTTC AGGATTGATGTTGATTAATATTAATATCAATCTTAAATTATTTTCTTTTTACTTTCATAATCTCTCTTATGACAACTACA TTTAGGTAAATCATATATGTGCATGCATGATGACAGAGAGTTTGGGTTGTAAGTAAACCACACCTGTGTCTATCTTTCTG TGTTCAATTTTCAGATATCTTTTAATTTGTGATCATGTTATTGATGTATACATGTAGGGTTTATGCTGGGCTAGGTAATA CCAATAGCTAGCATAGTCGCTAGTGGGTTCTCCTGGTGCAAAACTATTAATTGTTCCAACCAGAAAACACACATTTTATC GCATTAATGAAAAAGTAAGATTTTATTGTACTTCATTTCAATATATTCATTGTTTATAAAAAAAATGGTTCACTTTAACT TACACTAGGTACTATAACATTTTTGTTTTGTTTTATCAAAATAGTAGTACAGTTATAAATCTATACCTTTATTTTTGCCC CGTCATCTTGTTTGTTAGAACAGCAACACGAATACAGATCAGAGTAGAGAGAAACACACAAAGCTTTGTTCACGCAGTTC GGTCAAATTGCCTACCTCTGCGACTATAGAGCAGCTATAGTTCCGTTTATTGATTCGAACCTGAATACAATCACTCAGCA ATTGCAATTTCTCTCAATTGC
CDS sequence (LotjaGi5g1v0026800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGACAGGGATTATTGTTGTTCCACCATGAATTCAACCGCCACAAGAACCAGAATCAGCAGCACCAAAGAGAA AGGGATCACAAAGCAAAACCAATTAGAGAAACCAATGAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGGAAGTGGG TGGCGGAGATCAGAGAGCCCAACAAGAGGTCGAGGATCTGGCTGGGATCCTACACCACCCCTGTCGCCGCCGCACGCGCC TACGACACCGCCGTGTTCTGCCTCAGAGGCCCCTCAGCACGCCTCAACTTCCCGGAATTGCTTTTCCAAGACCAAGATAA GGATGGTGGTGATGGTGATGGCGGTGGCGGTTCCATCCAACAAGGGAACATGTCTGCTGATTCAATACGCAAAAAAGCAA CACAAGTTGGTGCTAGAGTGGATGCTCTCCAAACGGCTCTTCATGGTTCTTCACTACACTCCTCTTCCAACACTTCCTCC TTGAAGCCTGATTTGAATGAGTTTCCAAAACCTGAAGAAGATTGCCTTGAAGCACTTCAGGATTGA
Protein sequence (LotjaGi5g1v0026800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEDRDYCCSTMNSTATRTRISSTKEKGITKQNQLEKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARA YDTAVFCLRGPSARLNFPELLFQDQDKDGGDGDGGGGSIQQGNMSADSIRKKATQVGARVDALQTALHGSSLHSSSNTSS LKPDLNEFPKPEEDCLEALQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 173 | 169 | 2.0E-69 | – | |
| PANTHER | 5 | 173 | 169 | 2.0E-69 | – | |
| Gene3D | 40 | 100 | 61 | 1.1E-29 | ||
| SUPERFAMILY | 41 | 99 | 59 | 5.17E-21 | ||
| ProSiteProfiles | 41 | 98 | 58 | 22.3 | ||
| SMART | 41 | 104 | 64 | 2.3E-37 | ||
| Pfam | 42 | 90 | 49 | 5.2E-10 | ||
| PRINTS | 42 | 53 | 12 | 1.1E-11 | ||
| CDD | 42 | 100 | 59 | 5.61694E-30 | ||
| PRINTS | 80 | 100 | 21 | 1.1E-11 | ||
| MobiDBLite | 103 | 135 | 33 | - | – | |
| MobiDBLite | 147 | 164 | 18 | - | – | |
| MobiDBLite | 147 | 181 | 35 | - | – | |
| MobiDBLite | 166 | 181 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0026800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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