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LotjaGi5g1v0027200.1

Overview

Field Value
Gene ID LotjaGi5g1v0027200
Transcript ID LotjaGi5g1v0027200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G36930.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA; TrEMBL-Plants: tr|K7M5M7|K7M5M7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0027200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4549520..4552571) extracted from Lotus japonicus Gifu genome v1.2.

CCTCGTACACATGGTATAAAACCAATTTAAAACATTAATCCCGCTACAAAACCTCAACGTCACACCCTTTTGGCTTTTGT CCTTTTCCCTATTCCCTAGCTAGCTGCTGAGCATAGCATATTATAGCAGAGAGCACAACACAACAACACAGACATCAACA TTCTCTAAATTCTTCTCCTTTTTCCTCTTTTCTCAGTTTTGTTTTCTGACCACCTTTCAAAGTTCAATGGAAGGTGGCAG CAGTAATTTACACCGAACACAACCACCACCTTTAACAAGAGCCTCACCTCCTGATTCTGAAGACTTCACCACCTTGTTCA ACCACCTCCTCCACCACCCTCCGCCACCAGATATGGATCCGCATAATTCCGGGTCTGGTTTCAATTTCTCAGATCCTTAT GTGAATAATGCTTGCTTCCCTGACCCTCATGATATCACTTCCTTCAAACAACACCAGAATTTCACTTCTATTGAGGTGGT ACTACCTCCTTCAATTTCTTCTTTCAACTTTCAAATATGTTAGCATATACATACACCCATTAGGCCCATTTTTTCAATTT AAACATCAAAATTGGAACTTGTTATATGTATTAGAAATTCTCTATTTCTATTAGTTAGTATGTGTTTCTGGTTGCAAGGC TTAATAAAACTCAATTCAAATTCTTCTCTCTAGTTTCTAACAGAGATGTTAACACATACATACACCCTTTGAACCCAACT TTTCAATTTTGATATCATAATTGAAACTTGTTATATTTATAAAAAAAATCTCTATTCATATTAGTTAGTATGTGTTTCTG GTTGCAAGGCTTAAGAAAACTCTAAAAAGCATAGTTTGGTAGATCTTACTGTATTTTGTTTTTTTTTGGTAGAAGAATGT TGCTGAGGCTTCAGAGTTGCCATCAAATTCTGTCCCACGACCACGTTCTTCTTCATCAAAGAGGAGCAGAGCTGCAGAGT TCCATAATTTGTCTGAAAAGGTTAGATTTTGAATTGATCCTTCAATTTTTTTGGAGAAATCTTTCTGATTTTGAAAATTT TGTGGATAATTTTATTGGATGAGCAGAGAAGGAGGAGTAAGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCA AATTCTAACAAGGTATTTCTATATACATGTTCCTCATTTTTTTTTTTTTTCTTCATTGATTACTTTAACTTATCTTACAA AAGACTTTTTATTTGGTTTCTGGTTTAATTCCTTATTTGCTTTCTCTTCTGGATGAATTCGGTGTGTTTGTTTTAAATAG ACTGACAAAGCTTCAATGCTGGATGAAGCCATAGAATACTTAAAGCAGCTTCAGCTTCAAGTGCAAGTGAGAATTCTTTC CATCATGGCTGTAATATTACATGATCACTCCTCAGATATGTCGTTTTCTTAATACCTTGTGCTGCTAATGTATATGGGGG ATTTTCTGAGTGACTATGTTAAGTTTGTCTTTGGATCAGCGCTAGCAAATTGATTATGAACAGAACCGAGTCTACTATAA TTGCATATAGCAAATGTGAGTTAAGATGATCTAATTTATGTTTGGATACTTTTATGAAAAAAAAGGATTTTAAGGTAATG GTCTGAAATTCAGTTGGAAAATATCATAAAAGATTACCAGCAACAATACTTATTCACTTTCAAATTTTCATTTTATGAAA TACTTTTTTGTGATCATGGAATGAATGGTTTTTCCAACTGAGGCCTTCCAATAGGATGAAGAGATGAGAACTTTTAAGCA TGTCTTGTGCATTGCAATCAATATAACATACTGCTAGTCTTAATAAACAACAAATGTTATGATTGTTTGTTTGCAATTTG CATGCTCAACCATGATTTAGCATGGGGTTTCTTTTGTTAGTCACCAAAAGATAAGCTTTCCTATAGCACTACATAGGTCC TTAGGTTGTGCATGTTTAGAAACTCGTTTGAAAACCCTGATGAAGTTAAAATCATTGTGAGAAAAAGCAAGTTTCTGTTG ATAAAAACAAAAGATTGTATGTCCTTCGTTGTTCTTCTATGAATTGAGTAAAAAGTTTGTTCATGCTGCACTCATGTACC CAAACACACACTTGGAAGTTGGTCGTGCCACATTCGGGTCATGTAGGTCCATTAATCCTTCATTGACTAATTGTTACTTT AGTGCTTGTGATTGATTCTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTATCAGGAGGATTA CGGCCTTCGATATTTCCCCAGACCGGGTTGAATATTGATGAAGGTAATGGATTTCGGAATTCTGTCAGTGCAAATGATGA GAGTTTGGTTCGGTCTGCTTTTAGTTTTCCAGAGCATTGCAGCATCTCAAATCAGTCCATACCCTCAGTTACAAACATAG CTACTTTGGATACATCATCAAGTTTTCAACTCTCCATTAAGGTTCATGTTGGATACTTTAACCTTTCAATACCATGAATT ATAATTTTCATAAATAATACTACTTTGTTTGTTAGCGTCAGTTTGGATACAGTCCAAATGTATGAAATCAGTAAAATAAC ACATCTCAAAGTGTCTCGAGATGTGCTATTTTTCAATTTTCATACTTTGTTATTGGTATCCAAACAGGCTCTTAATCTGT TGAAATTAACAACTCTTTGTGCAAACATGAAGGATGCACTCGGCAGCAACATGCCACAAATGTTTCTGGATACAGCAAAG ATTGGAAAGCCCCCTTCTCCAGATTTATCCTAAAGAGCTTGAATTCATCATGATCTACGCTTAAACTTGAATTTGCTAAC TGCAACAACACATTCCATTTGGATCCGTGGTACAGTTTGACAAAATCTTTGTGCCGTATAACAGGTGCATTAAAATGTAA TAGCATTTTATAACATAACATATTCAATTGCAAAATGAAGCTAAAGAACATTCTGCAACATGTTATGTCTTTCTTTTGAT ATTTTTGGATATTTTGATTGGTTATATACTATCTACTTGAGCAGAAAACATAATCTCTGTTATTACTTCTCGATTCAAGA ATTACATCTCAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0027200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGTGGCAGCAGTAATTTACACCGAACACAACCACCACCTTTAACAAGAGCCTCACCTCCTGATTCTGAAGACTT CACCACCTTGTTCAACCACCTCCTCCACCACCCTCCGCCACCAGATATGGATCCGCATAATTCCGGGTCTGGTTTCAATT TCTCAGATCCTTATGTGAATAATGCTTGCTTCCCTGACCCTCATGATATCACTTCCTTCAAACAACACCAGAATTTCACT TCTATTGAGAAGAATGTTGCTGAGGCTTCAGAGTTGCCATCAAATTCTGTCCCACGACCACGTTCTTCTTCATCAAAGAG GAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAACGAGAAAATGAAAGCCTTGCAGA ATTTAATTCCAAATTCTAACAAGACTGACAAAGCTTCAATGCTGGATGAAGCCATAGAATACTTAAAGCAGCTTCAGCTT CAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTATCAGGAGGATTACGGCCTTCGATATT TCCCCAGACCGGGTTGAATATTGATGAAGGTAATGGATTTCGGAATTCTGTCAGTGCAAATGATGAGAGTTTGGTTCGGT CTGCTTTTAGTTTTCCAGAGCATTGCAGCATCTCAAATCAGTCCATACCCTCAGTTACAAACATAGCTACTTTGGATACA TCATCAAGTTTTCAACTCTCCATTAAGGATGCACTCGGCAGCAACATGCCACAAATGTTTCTGGATACAGCAAAGATTGG AAAGCCCCCTTCTCCAGATTTATCCTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0027200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGGSSNLHRTQPPPLTRASPPDSEDFTTLFNHLLHHPPPPDMDPHNSGSGFNFSDPYVNNACFPDPHDITSFKQHQNFT SIEKNVAEASELPSNSVPRPRSSSSKRSRAAEFHNLSEKRRRSKINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQL QVQMLMMRNGLSLHPMSLSGGLRPSIFPQTGLNIDEGNGFRNSVSANDESLVRSAFSFPEHCSISNQSIPSVTNIATLDT SSSFQLSIKDALGSNMPQMFLDTAKIGKPPSPDLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 51 51 - –
PANTHER
PTHR45855
20 271 252 1.0E-107 –
PANTHER
PTHR45855:SF2
20 271 252 1.0E-107 –
MobiDBLite
mobidb-lite
88 104 17 - –
MobiDBLite
mobidb-lite
88 120 33 - –
Gene3D
G3DSA:4.10.280.10
104 167 64 9.2E-20
IPR036638
MobiDBLite
mobidb-lite
105 120 16 - –
SUPERFAMILY
SSF47459
106 169 64 2.36E-20
IPR036638
ProSiteProfiles
PS50888
109 158 50 17.777
IPR011598
CDD
cd00083
112 163 52 2.40992E-18
IPR011598
Pfam
PF00010
114 159 46 2.9E-14
IPR011598
SMART
SM00353
115 164 50 6.0E-18
IPR011598

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0027200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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