Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0028900 |
| Transcript ID | LotjaGi5g1v0028900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2H2-like zinc finger protein; TAIR: AT5G52010.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9D2D7|ZN687_MOUSE Zinc finger protein 687; TrEMBL-Plants: tr|G7I9W5|G7I9W5_MEDTR C2H2 type zinc finger protein; Found in the gene: LotjaGi5g1v0028900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4751164..4759452) extracted from Lotus japonicus Gifu genome v1.2.
GAAGATGTTCCTTCACATTTTTCTGGGGACCTTATCACCAAGAAAGCAATGCCAGGGAGCAAAGCATGAATCCCCTCTCC CTCCTCCACACCGCAAATGCACCACCACCACCATGCCCTCTCCTCCACCACCACCGTCAAAAACCCACCACAGTCTCAGT CTCAGTCTTATTCCCGCACAGACACAACAGATTCCGATGCTGCTCCTCCATCGAGATCGACATGGTGAGAGACAACAAGA CAGGCTCCTACGCCGCTAAACAGAACAAGGTCGTCGTCCTCTGGGACCTCGACAACAAACCCCCCCGCGGCCCACCGTAC CACGCCGCCGTCTCCCTCAAAACCCTAGCCGAATCCTTCGGCGACGTCGTCGACATCTCCGCCTACGCCAACCGCCACGC CTTCATCCACCTCCCTCAGTGGGTCCTCCACGAGCGCCGCCAACGCAAAACCACCGACATCCTCGAGAAAAAGGGCATCG TCACGCCCTCTGATCCCTACGTCTGCACCGTCTGCGGCCGCAAGTGCAAGACCAATCTCGATCTGAAGAAGCACTTCAAG CAGTTACATCAGCGCGAGCGGCAGAAGAAGCTGAATCGCATGAACTCGCTCAAGGGGAAGAAGCGACAGCGGTTTAAGGA GAGGTTTATTCGTGGGAACCATAAGTATAACGAGGCGGCCAGGACGCTTGTGACGCCCAAGGTTGGGTATGGTTTAGCCT CGGAGCTGCGGCGTGCTGGGGTTTTTGTCAAGACGGTGGAGGATAAGCCTCAGGCGGCGGATTGGGCGTTGAAGAGGCAG ATGCAGCATTCCATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCAGATGATTCGGATTTCTCCGAGATGTTGAAGCG GGCCAGGGAGGCCAATTTGGGGACCGTGGTGGTCGGGGATGCCGATAGGGCATTGGGGCAGCATGCTGATTTTTGGGTTC CCTGGATTGCGGTCGAGAAGGGCGAGGTTTCGGAGATGGATTTGAAGAACAGGGAGAGGAGGAGGAGAAGAACAACAACA GAGGATTCGCCGGATGGCTTGTTTTTCAATGAGGGTGATGAGGAATTGGATGATGATTTTGTGTTGGTGTATAGTGAGGA TGATGATGATGATGAGGAGGACTACACAGATGATGAGGATGAAGAAGAAGGAGGGTTTTATTCTTTATAAATGAAGTTAG AATTGATTGGAGATTTCTGAATCAATTACCCAAATAGAGACACTGATTGATAGAAAGTTTGGATTAGCTTCTCTCTCATC ATAATCAATTCAGGCACCCATAAGGTACCCCATAAGCTTCTCCATATCATTTGATTTTGGCTTTTGAATCAATTGTAGAA GCATGAAAAAACATGCACTTGGTGGTGCTAAGTTGAAGTGGGGATAGTGTTCTGTTGTTAAGTTATGTATAATTGGAGGG TTGCAATGCTTTTTGTCATTGAAAAAAGTCTGTTTATTTGTTTTTTAAATGTTGCCTTCTGCTATTTTCTTGATCATACT GCTAAGGCTAGTGCTGCTTAGGAAAATGTTTCCTTCACACCATTTCCACCTCCATTTTTTGGAGAGATATAAGAATAGAA GAGAGAAATGAGGGATATGATGAGTAATGTGATATGAACTAGTTAGAAACAGAAGAGTGAGATAGATAGCAAGAAAAAGT GGGTGAAAATGATATATAAGAGAAACTGGGTGTGATTATATTAAACTTGTGCTGCTTAATGTTCAGGCTTGCAATCCTTC CCCCTCCTTGAATAGTGTTGCAAACCCACACTCTAGGCCCAGATTTGGCAAAGTCTATGAGAGGAGGCCCAAGCAAGGGA CAGCTGTAACTGAAGATCCACCTTCTAGAAGCTTGGATCCCAAGATAACCGACTAATGAGGTGGCAACACCCACATGGGT GAGGGGGGGGACCATAGGGTATCAACCTAGGGAATATATGTTGGTTTTGGAGAGAGAGTGAGGTAGGCAGAAATTAGTCT GGACTGGGAGAGATTGAGCACTCTCGAATTGCTCAAGTTTATCTTGTTATTTTCCTTGTCATTTCCTTCTTGTATTTCCC TAAACACTGCTTCTGGGTTCATACCAGAGGATTCAGTGCCTTAATAGCATTCAATTTTCTTCTTTCCTATTACATTTTTC TGGTACCTAACATTGGTATCAGAGCTCCCGATCCAAAGGGAGCTTTGTATGGTACTCACCCGCAGCGCTATGGAGAATCG GGTTGACAACTTGGAGCGTTCCCTCACCGAGATGAAGGAAGTGGCTCACGAACAGTTTGAGGAGCTCCGACGACTCTTCC TGAGTCGCAACAACCGACGACTCTTCCTGAGTCGCAACAACCGACAAAGGGGTCGTTCCAACACCCCACGCCATCGAAGA ACCTCACGCGATGCGAGCTCAGTCACCGCAAGGAGAAGCGATATCGGGTCACAACCCGGGTCGCGCTCTTGGTCTCGAGC TGCGACGCACGATCGTGAGCAGCACGAACACTATCATCATCGTCACCATCTGCGAGCGGTCACGGGAAGGTGAGTCGACA TTCCGATGTTCAACGGAAGCGACACGTATGGCTGGATAACGAAGGTCGAGCGTTTTTTCAGACTCGGTCGGGTCGAAGAG AGGGAGAAGATCGAGATGGTGATGATCACCATGGAAGGTCGTGCCCTCAGCTGGTTCCAGTGGTGGGAAGAGCAAGCTCA GGAGCGAGCTTGGGAACCGTTCAAACAAGCTCTGATCCGCCGTTTCCAACCGGATCTTGTCCAGAACCCGTTCCGACCTC TGCTCAGTGCCAAACAGAAGGGTAGCGTCATGGAATATCGAGAAGCCTTCGAGCTCTTAGCTGCACCCATGAGAAACGCT GACAGGGAGGTGTTAAAATGGGTATTCCTGAACGGTTTGCAGGAAGACATCAAGGCTGAAATGAAATTGTACCCAGCTGA TGACCTCGCTGAGCTGATGGACAGAGCACTGCTGCTCGAGGAGAAAAACTCCGCCATGAGAGGAGGGAAACTGAGAGATG ATGATAAACGTGGGTGGAAGGAGAAAGGAGGAACTGGGGGAAGGTATTTTCCCAGTACTGGAGACAACAAGGGGAGGTTT GCTAACTCTGCTGCGAATCACCAAAACAGAGGGGGAACTGGAACTGCTGAAAATGATGGGAAAACTCTTGTGAACAAAGG GGGAACAGGAAGCAATGAAGGAAAAATTCCTGCGAAGAAGTGGAATGGAGGGCAAAGGCTCTCTCAAACCGAGCTGCAGG AAAGAAGTAGGAAGGGGTTATGCTTTAAGTGTGGGGGAGAAGTGGGGAAGGGAGCACATATGTGCCATGAGGAATTATCA ATTGATTCTGGTAGAGGGGGAGGAGGAAGAAGAGGTTTTCGAAGAGGCTGAGGATGGGGAATTCATTTTGGAAGGAAAGG TGCTGCAATTATCCCTGAATAGCAAGGAAGGGTTAACCTCTAATAGATCTTTCAAGGTCAAAGGAAAGATTGGGAGCAGA GAAGTTCTGATATTGGTGGATTGTGGGGCAACCAGCAACTTCATTTCACAAGAGCTGGTGGTGGAACTAGACATACCTGT GATTGCCACTTCAGAGTACATAGTGGAGGTGGGAAATGGGGCTAGGGAGAGAAATTCCGGAGTATGTAAGAACCTGAAGC TAGAGGTTCAGGGGATTCCCATTACTCAACATTTTTTCATCCTAGGCCTAGGGGGAACAAAAGTGGTGCTAGGAATGGAT TGGCTTGCTAGTCTTGGCAACATTAGAGCAAAATTCCAAAAGCTGACCATTCAATGGGAGGTTCAAGGACAGAAAATGTT CTTACAAGGGGAACCATCCTGGTGTAAGATTGCTGCAAGATGGAAATCTATTAAAAAGACTATGGAGAAGGAGGGGGAAG CATATTACCTCTCTTATGAGGGGTTGACTGAGGATCCAAGGATTGCAACTGAGATTTCAGAAGAGATAGAGGGAATCCTA ACAGAATTTCCTGAAGTTTTTCAAGAGCCAAAGGGGCTACCTCCCAAGAGAGCAACAGATCATGCCATTTTGCTTCAAGA AGGAGCTTCCATACCCAACAGTAGACCCTACAGGTTTCCATTCTATCAGAAAAATGAGATTGAAAAATTAGTAAAAGACA TGCTCAAGGCAGGGATCATTAGACCCAGTACAAGTCCTTTTAGTAGTCCTGCTATATTGGTGAAAAAGAAAGATGGAGGG TGGCGATTTTGTGTGGATTATAGAGCCCTCAACAAGCTTACAATCCCTGACAAATTCCCTATACCAATTATTGATGAACT GTTAGATGAAATAGGAGCAGCTGTGGTTTTTTCAAAACTTGATTTGAAATCTGGTTATCACCAGATTAGAATGAGAGAGG AAGACATTCCTAAGACTGCTTTCAGAACCCATGAGGGCCACTATGAATACCTAGTCCTACCATTTGGCCTATCCAATGCA CCCTCAACCTTTCAAGCACTCATGAACCAAGTCTTGAAGCCCTATCTTAGAAAATTTGCACTTGTATTTTTTGATGATAT CTTGATCTACAGTGAGAGTGAGGAAAAGTATAGGGAACACTTGAGGAAAGTTTTGCAAGCTTTAGAGGATAACCATCTGG TGGCAAACCAAAAGAAATGTTCTTTTGGTCTACTGGAATTGGTGTATTTGGGGCATGTGATATCAGGACAAGGGGTAGCT GCTGACCCTAACAAAATCAAAGATATGTTGAACTGGCCCACTCCAAAAGATGTGAAAGGATTAAGAGATTTCCTTGGGTT AACAGGGTATTATAGGAAATTTGTGAAGAATTATAGTAAGCTGGCCCAACCTCTCAACCATTTACTCAAAAAGAACAACT TCAGTTGGAGTGAAGAGGCAGCTCAGGCTTTTGAGAATCTGAAGGTGATCATGACAACTGTGCCAGTTTTGGCAGTGCCA AATTTTGCAAAAACCTTTGTCCTAGAGACTGATGCATCAGGAAAAGGGTTAGGAGCTGTACTAATGCAAGATGGGAAACC AGTGGCTTATATGAGTAAGACACTTTCAGAAAGAGCACAGGCCAAGTTTGTATGTGAGAGAGAATTAATGGCAGTAGTGA TTGCAGTTCAGAAATGGAGACACTATCTCCTAAGGCAGAAATTCATCATACATACAGATCAGAAGAGCCTAAGATTCTTA GCTGAATAGAGGTTGATGGGAGTGGAACAACAGAAATGGGTATCCAAATTAATGGGATTTGATTTTGAAATCAAATACAA GCCAGGGATTGAGAATAAGGCAGCAGATGCCTTATCCAGAAAAATGCAATTCTCAGCTATATCTTCAGTTCATTGTGCAG ATTGGGAGGATTTAGAAACTGAGATTATGGCAGAGGAAAAATATAGGAAAATCATGCAAGAGCTGGTCACTCAAGGCACT TTTGTGGCAGGGTACCAATTGAGGAGAGGGAGATTACTTTATAAAGGAAGGATTGTCATTCCCAAGGGGTCTGGGAAAAT TCTCACCATATTACAAGAGTTCCATGACTCTAAACAAGGAGGGCATGCAGGCATTTTCAGAACCTATAAGAGGATTTATG CTCTCTTTTTCTGGGAAGGGATGAAGCTGGATATTCAGAGTTATGTACAGAAATGTGAAATCTGTCAAAGGAACAAATAT GAAGCACTCAGCCCAGCTGGTTTCCTACAACCACTACCCATCCCTACTCAGGTATGGACTGACATTTCCATGGATTTCAT TGGGGGGCTACCTAAAACCATGGGAAAAGACACAATACTGGTAGTAGTGGACAGATTCACCAAGTATGCTCACTTCTTTG CACTCTCACACCCTTATAATGCAAAAGAAGTTGCAGAACTCTTTATCAAGGAGGTAGTCAAACTACATGGATTTCCTACA TCCATAGTCTCTGATAGAGACAGAGTTTTCCTAAGCACCTTCTGGACAGAACTATTCAAATTAGCAGGAACCAAATTGAA ATTTAGTTCTGCATACCACCCACAAACAGATGGACAGACTGAGATTGTAAACAAATGTGTGGAGACCTATCTTAGGTGTG TGACTGAGACCAAACCCAAACAGTGGCCTAAGTGGTTGTGTTGGGCAGAATTTTGGTACAACACCAACTACCATTCTACC ATCAAAACCACACCCTTCAAGGCATTATATGGGAGGGAAGCACCTGTGATCATCAAGGGGACTGATTCTTTAACTTCAGT AGAGGAAGTTGAAAGGATGACTGCTGAGAGGAACCTACTTCTGGAAGAGCTCAAAGAAAATCTGGAAAAAGCCCAGAACA GAATGAAACAGCAGGCCAATAAACACAGGAGAGATGTGCAGTTTGAGATTGGGGACATGGTATACCTCAAGATACAGCCT TATAAGCTCGAAAGCCTGGCTAAAAGGAAAAATCAGAAGCTTAGTCCAAGGTACTATGGACCCTTTTTAGTGATAGACAA GATCAACCCTGTTGCTTACAAGTTGCAATTACCAGAGGGCAGTCTAGTCCATCCAGTATTTCACATTTCCTTGCTCAAGA AGGCAATTAATGAGGGAACTCCTTGCCAACCATTACCCAGCTCATTAACAGAAGATTGGGAGCTCTTAGTAGAACCAGAA ACTATTCTGGGAACAAGACAGAAGGAGAATGGGAGCATTGAAGTTTTGGTTAGATGGAAGGATCTTCCAAGTTTTGAAGA TTCCTGGGAAGACTACACTGCTCTGCTGGAACAATTCCCTAATCATCACCTTGAGGACAAGGTGATTCCTCAAGGGGGGA GAGATGTTGCAAACCCACACTCTAGGCCCAGATTTGGCAAAGTCTATGAGAGGAGGCCCAAGCAAGGGACAACTGTACCT GAAGATCCACCTTCTAGAAGCTTGGATCCCAAGATAACCGACTAATGAGGTGGCAACACCTACATGGGTGAGGGGGGGGG ACCATAGGGTATCAACCTAGGGAATATATGTTGGTTTTGGAGAGAGAGTGAGGTAGGCAGAAATTAGTCTGGACTGGGAG AGATTGAGCACTCTCGAATTGCTCTAGTTTATCTTGTTATTTTCCTTCTTGTCATTTCCTTCTTGTATTTCCCTAAACAC TGCTTCTGGGTTCATACCAGAGGATTCAGTGCCTTAATAGCATTCAATTTTCTTCTTTCCTATTACATTTTTCTGGTACC TAACAAATAGATTTTATGAATGAGATGAAAGTCATGAGGATAGATTGCACACTGCAGTTTGGCACGGGCACTGAAGTTAC AAGTGTCCATTATGGCATAGTTGAGTTCAACAATATGATATGCTTTGATGTTTATGGCTTGTGTCTGGCTCTGTCATGTT AAGTATGTATGGAGAGCAAACGGATAGACTTCTTTTTTGTTATCATGGAGCTCAACCATAATATTTTTTTTTATAATTAG CTCAACCATAATATTATTATTATTATGGACAAAACTTATGTGCAGTACCTTAGGTACTGGTTTTACTGCTTTACTATTAG CCGATCATTGTAGAATATGCGGACTATTATTTTCACATCATTAAATCCAATTCTAATAACCTCACTCTGTTAATGAATTA CTCTCTCTTATCAACATAAGAAGGATCTATTGAAGACAAAGAGAAACAATGGCTAAGAGATCATGAGAGGAGAGATGGGG TCTAGCCTCCTGGTCACGACGCTCTTTAATGACTCAGAAGAAAAGAGACTGCGAAGGTGACGAGATGAACATATAAGATA CATTGTTGTAATGTAGGCACAATGGGCTAGGTTTGTGGTATCGTTATGGTCCGCCGGCGGCGCGGTTACATGGTGAAGCT GCGGTTTTGGCGGTGTGAGGCAGAGGGCTCAATGAAGACTCTCTTTCTTAGGAGTTTTGCGACTGGAGGCAGGACATGGC GGTGAACTTGGTTGGCTTAGGTGGTTGTCGTGGTGGAAGAACGGCGTCTGAGTGCAGAGGACGGTTTAGCCTCTTGGAAG TTATATGAGATCTGATAAAGGTTGGGAAGATACCTCCATGGAAGAACCTAAGAAGGCTCGTGAGTTCAGCTATTTCTACA TTTTCACTGTAAATTGACATTTTTTTTCTTGGACTATGTAAAGATTGATTCTGGTATATTGTTTCTTTTAGGCTTAATTA AGTTTTTGATCCATAACCTTTGGCATAAATATGACTTTAGTCCCTCGTTGGCGTAAGTGTGGGGAGTGGTCCCCAGTTTT TGGACAAATAGTTGGCTTTGGTCTCTCCGACCGTTTGGGTTAGTGTCGG
CDS sequence (LotjaGi5g1v0028900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCCCTCTCCCTCCTCCACACCGCAAATGCACCACCACCACCATGCCCTCTCCTCCACCACCACCGTCAAAAACC CACCACAGTCTCAGTCTCAGTCTTATTCCCGCACAGACACAACAGATTCCGATGCTGCTCCTCCATCGAGATCGACATGG TGAGAGACAACAAGACAGGCTCCTACGCCGCTAAACAGAACAAGGTCGTCGTCCTCTGGGACCTCGACAACAAACCCCCC CGCGGCCCACCGTACCACGCCGCCGTCTCCCTCAAAACCCTAGCCGAATCCTTCGGCGACGTCGTCGACATCTCCGCCTA CGCCAACCGCCACGCCTTCATCCACCTCCCTCAGTGGGTCCTCCACGAGCGCCGCCAACGCAAAACCACCGACATCCTCG AGAAAAAGGGCATCGTCACGCCCTCTGATCCCTACGTCTGCACCGTCTGCGGCCGCAAGTGCAAGACCAATCTCGATCTG AAGAAGCACTTCAAGCAGTTACATCAGCGCGAGCGGCAGAAGAAGCTGAATCGCATGAACTCGCTCAAGGGGAAGAAGCG ACAGCGGTTTAAGGAGAGGTTTATTCGTGGGAACCATAAGTATAACGAGGCGGCCAGGACGCTTGTGACGCCCAAGGTTG GGTATGGTTTAGCCTCGGAGCTGCGGCGTGCTGGGGTTTTTGTCAAGACGGTGGAGGATAAGCCTCAGGCGGCGGATTGG GCGTTGAAGAGGCAGATGCAGCATTCCATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCAGATGATTCGGATTTCTC CGAGATGTTGAAGCGGGCCAGGGAGGCCAATTTGGGGACCGTGGTGGTCGGGGATGCCGATAGGGCATTGGGGCAGCATG CTGATTTTTGGGTTCCCTGGATTGCGGTCGAGAAGGGCGAGGTTTCGGAGATGGATTTGAAGAACAGGGAGAGGAGGAGG AGAAGAACAACAACAGAGGATTCGCCGGATGGCTTGTTTTTCAATGAGGGTGATGAGGAATTGGATGATGATTTTGTGTT GGTGTATAGTGAGGATGATGATGATGATGAGGAGGACTACACAGATGATGAGGATGAAGAAGAAGGAGGGTTTTATTCTT TATAA
Protein sequence (LotjaGi5g1v0028900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPLSLLHTANAPPPPCPLLHHHRQKPTTVSVSVLFPHRHNRFRCCSSIEIDMVRDNKTGSYAAKQNKVVVLWDLDNKPP RGPPYHAAVSLKTLAESFGDVVDISAYANRHAFIHLPQWVLHERRQRKTTDILEKKGIVTPSDPYVCTVCGRKCKTNLDL KKHFKQLHQRERQKKLNRMNSLKGKKRQRFKERFIRGNHKYNEAARTLVTPKVGYGLASELRRAGVFVKTVEDKPQAADW ALKRQMQHSMSRGIDWLFLVSDDSDFSEMLKRAREANLGTVVVGDADRALGQHADFWVPWIAVEKGEVSEMDLKNRERRR RRTTTEDSPDGLFFNEGDEELDDDFVLVYSEDDDDDEEDYTDDEDEEEGGFYSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 348 | 305 | 5.8E-160 | – | |
| PANTHER | 44 | 348 | 305 | 5.8E-160 | – | |
| CDD | 68 | 109 | 42 | 0.0071745 | – | |
| ProSiteProfiles | 145 | 173 | 29 | 10.949 | ||
| SMART | 145 | 168 | 24 | 0.0048 | ||
| ProSitePatterns | 147 | 168 | 22 | - | ||
| CDD | 155 | 285 | 131 | 9.07841E-72 | – | |
| MobiDBLite | 317 | 374 | 58 | - | – | |
| MobiDBLite | 332 | 374 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0028900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…