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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0031700 |
| Transcript ID | LotjaGi5g1v0031700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT1G47230.1 CYCLIN A3;4; Swiss-Prot: sp|Q9FMH5|CCA31_ARATH Putative cyclin-A3-1; TrEMBL-Plants: tr|I1M8R8|I1M8R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0031700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5239338..5242275) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAATCAGCCCAAAATTTTGGTTACTACATTCAGAGTCCGCCTAGTTAAAACTTGAAACTCTTTGAAATGAAAACAAA GAGAGAGGGAGGGGAGACACACACCAAAAATCCACACACCATAATTAACATAAAAGGAAATAAAAAAAAAGAGGGAATCC AATAAAACCTAGATTTGAAACAGAGTCAGAGAGAGATGAATGAAAGTTGAAAACAATTACACAAAGAAGCAAAAAAGTAA ATGCCAAAATTTCCAGTTTCCACCGTGAGCGGGAACCACTGCTTCAGCCAAATTTCGAAACCACGCGCCTCCGCAATCCA CCAATAACCTCCAAAATTTTCCGCTTCTTCTTTCTTAAACCCCATTTCCTCTTTCTCTTCCTTCACCACTCTCCACCATT TTCACTCTCTTCTCCACCTTCCATGGCCGACAAAGAGAACATCGCCGCCGTGCTCCGCCCCCAGCGCGAGGCCAAGAAGC GGGCCGCAGCTGCGTTATGCGAACTTCGCCCCAAGAAGAAGCGTGTTGTGTTGGGGGAGCTTACCAATCTCTCTAGCCCG GCGGAAAAGCCCACATCGGAGAAGAGGAGGAGGGTCGGAAAATCGAAGGCGCCGCCGCCGCCGGAGAAGCGGGATGACCC TCAAATGTGTTTGCCTTACGTTTCTGACATCTACGAGTATCTTCGGAGCATGGAGGTAACGCAATTAGTTTGCACTAGTT AGAACTAGGGTTTTGAAATTGGGGGTTTCTGTCGTTTTTGTTGAAAACGTGAACTTTTTTGTGTTTGTTTTAATGGGTTT TTCTTTGTTTTTTGTGTGGTTCAGGTGGATCCTAGTAAAAGACCATTACCAGATTATGTGCAGAAAGTTCAAAGGGATGT TAATGCTAACATGAGGGGTGTTTTGGTGGATTGGTTGGTGGAGGTTTCTGAGGAGTATAAGCTTGTTTCGGACACGCTTT ATTTCTGTGTTTCTTACATTGATAGGTTCCTCTCTTTGAATTCTTTGTCTAGACAGAAGCTGCAGTTACTTGGGGTTGCT TCCATGCTTGTTGCTTCGTGAGTTTGAGATTTGGATGCAATTTTTTATTTTATTTTATAGTTTATACTTTTTCATTTTTG CTGATATCGTTTGGTTTATTTTGTTGATAGAAAATATGAGGAGATCAAGCCACCTGAGGTGGAGGATTTTTGCTACATTA CAGACAACACATACTCCAAGGAAGAGGTAATTCTTGTGCTTCATTATGTGTTTTTGTATGCTTTCCTCTATTTCAATTTT TTTTGGATTTATTTGTTTATTTTATGTAATGAAGGTTGTGACAATGGAGGCTGATGTATTGAAGTCATTGAAGTTCGAAT TGGGTGGTCCTACAGTAAAGACATTTCTAAGGCATGTATATGCTTGATTTGATTATATCCTTCTTGTGTTGAATGGTTTT GTTTCAGTTATGTTGTGTTTTTTTTCCTGGCTTGTTGGCTAACTGTGTGATTTATACTGTGTTTACAGAAGATTCTCCAG AGTTGCTCAGGAGAGTATTGATGTAAGTTTACACTAGTCTCACTTGTTTTTTACAAATTATTCTTATGCTTAAACTTGAT TTTGTTTACAGTATTCTATCCTCCAATTTTATCTCCACTAAACCCTTACACATTGGGTTGGGTGTGCCAAATATGTGGAG TTGTCCTTTGACTTTATATTTTTTCCTGTGGTGCAGACTTCAGACTTGCAATTTGAGTTCCTTTGCTGCTACCTTGCTGA GCTCAGTTTACTGGATTATAATTGTGTGAAGTACTTGCCTTCTTTGGTGGCAGCATCTGTTATATTTCTAGCGAGATTTA TGTTGAGCCCGAAGATGCACCCTTGGGTAATATTTCATTCTAGTTGACGTGTATTTGGAAATTTTCTTGCATTGGCATAA TATTGATGGATACAGTCAATTGATAGTTTAATATACTACTAAAATTACTTTAGCACAATCTTGTCTTTTTTGCTATCACT TTTATGTGGTTGTGCCAATATATACTAGTGCTCATGTAAGAGTTACTCATGTGTTTGATATCCAATACGGTGGCAGTTAC TAAGTTATGCAGTATCTTCTTTTTTCCAGAATTCAGCGCTTCATCAACTGACCAAATATAATCCTGCTGATTTGAAGGAA TGTATTCTAAACATACATGATTTGTATCTCAGTAGGAGAGGGGGATCTTTGCTAGCTGTGAGAGATAAATACAAACAACA TAAGGTAATACTCCTACACACTGATTTTCATCCATTTGTTATTGAACTATTTAATTTGATGCCAGTCTTACGAAATTGAA TTATTTATTTCATGATACTTGTCATATTGGAGAAAGTTATGCTTATTCCTGTTGCAATGGTTGTTTTGGAAACAGTTCAA ATGTGTGGCAACAACACCCTCTCCTCCTGAGATACCTCTTTCTTTTTTCGAATTTGGAGAGACAGATCCTTAGGCAATGG TAACTATGCTTTTCTTGGTGTGGCTTTGGTTCCAACTTTGGCAGAGGCATGAGAGAAGGTTCTCCTAACATGAAGGTTCA GGTGGTTCACTGATGCTGATTGAGGTGCTTGCCATGAAATGCTATGGCATTTAATCTATCAAGTGCTGCCTCACTGACTT TATGACTGAACTTGTGTGACATAAGAGAAAAAAAAATCCCTGTAGCTGAATTAGGTTTTTTTACAGCATTTTTAGGTTTT GTTTGGAAGATTTCTCTGTAGGAGTTCTGATTTCTTTGTATGTATAGGAAGTGCTATACGTTTTCATCATAGTTGTTCTA TTCTATGATGTACCAGCTCTGATGTTCAGATTAATTTTTAAGCAATAAACTAGTGTTGGATTGATTACTTAATGTAGCAA TTTCCTATGGCTTCTTTCTTCTCTTGTCTAAACAAATGTCACTGATAGAATATTACTG
CDS sequence (LotjaGi5g1v0031700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGACAAAGAGAACATCGCCGCCGTGCTCCGCCCCCAGCGCGAGGCCAAGAAGCGGGCCGCAGCTGCGTTATGCGA ACTTCGCCCCAAGAAGAAGCGTGTTGTGTTGGGGGAGCTTACCAATCTCTCTAGCCCGGCGGAAAAGCCCACATCGGAGA AGAGGAGGAGGGTCGGAAAATCGAAGGCGCCGCCGCCGCCGGAGAAGCGGGATGACCCTCAAATGTGTTTGCCTTACGTT TCTGACATCTACGAGTATCTTCGGAGCATGGAGGTGGATCCTAGTAAAAGACCATTACCAGATTATGTGCAGAAAGTTCA AAGGGATGTTAATGCTAACATGAGGGGTGTTTTGGTGGATTGGTTGGTGGAGGTTTCTGAGGAGTATAAGCTTGTTTCGG ACACGCTTTATTTCTGTGTTTCTTACATTGATAGGTTCCTCTCTTTGAATTCTTTGTCTAGACAGAAGCTGCAGTTACTT GGGGTTGCTTCCATGCTTGTTGCTTCAAAATATGAGGAGATCAAGCCACCTGAGGTGGAGGATTTTTGCTACATTACAGA CAACACATACTCCAAGGAAGAGGTTGTGACAATGGAGGCTGATGTATTGAAGTCATTGAAGTTCGAATTGGGTGGTCCTA CAGTAAAGACATTTCTAAGAAGATTCTCCAGAGTTGCTCAGGAGAGTATTGATACTTCAGACTTGCAATTTGAGTTCCTT TGCTGCTACCTTGCTGAGCTCAGTTTACTGGATTATAATTGTGTGAAGTACTTGCCTTCTTTGGTGGCAGCATCTGTTAT ATTTCTAGCGAGATTTATGTTGAGCCCGAAGATGCACCCTTGGAATTCAGCGCTTCATCAACTGACCAAATATAATCCTG CTGATTTGAAGGAATGTATTCTAAACATACATGATTTGTATCTCAGTAGGAGAGGGGGATCTTTGCTAGCTGTGAGAGAT AAATACAAACAACATAAGTTCAAATGTGTGGCAACAACACCCTCTCCTCCTGAGATACCTCTTTCTTTTTTCGAATTTGG AGAGACAGATCCTTAG
Protein sequence (LotjaGi5g1v0031700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKENIAAVLRPQREAKKRAAAALCELRPKKKRVVLGELTNLSSPAEKPTSEKRRRVGKSKAPPPPEKRDDPQMCLPYV SDIYEYLRSMEVDPSKRPLPDYVQKVQRDVNANMRGVLVDWLVEVSEEYKLVSDTLYFCVSYIDRFLSLNSLSRQKLQLL GVASMLVASKYEEIKPPEVEDFCYITDNTYSKEEVVTMEADVLKSLKFELGGPTVKTFLRRFSRVAQESIDTSDLQFEFL CCYLAELSLLDYNCVKYLPSLVAASVIFLARFMLSPKMHPWNSALHQLTKYNPADLKECILNIHDLYLSRRGGSLLAVRD KYKQHKFKCVATTPSPPEIPLSFFEFGETDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 256 | 256 | - | – | |
| PIRSF | 1 | 341 | 341 | 4.6E-110 | – | |
| PANTHER | 12 | 346 | 335 | 9.9E-152 | – | |
| PANTHER | 12 | 346 | 335 | 9.9E-152 | ||
| MobiDBLite | 37 | 75 | 39 | - | – | |
| MobiDBLite | 49 | 69 | 21 | - | – | |
| SUPERFAMILY | 71 | 210 | 140 | 1.92E-47 | ||
| Pfam | 82 | 210 | 129 | 1.5E-41 | ||
| Gene3D | 84 | 331 | 248 | 5.8E-95 | – | |
| Gene3D | 98 | 211 | 114 | 5.8E-95 | – | |
| CDD | 114 | 203 | 90 | 5.1314E-20 | ||
| ProSitePatterns | 115 | 146 | 32 | - | ||
| SMART | 120 | 204 | 85 | 5.7E-24 | ||
| Pfam | 213 | 335 | 123 | 1.4E-34 | ||
| CDD | 213 | 304 | 92 | 3.54935E-15 | ||
| SUPERFAMILY | 213 | 338 | 126 | 2.65E-37 | ||
| SMART | 213 | 336 | 124 | 6.7E-39 | ||
| SMART | 217 | 305 | 89 | 1.5E-18 | ||
| Phobius | 257 | 274 | 18 | - | – | |
| Phobius | 275 | 351 | 77 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0031700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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