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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0033800 |
| Transcript ID | LotjaGi5g1v0033800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|I3SQF3|I3SQF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0033800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5506793..5509579) extracted from Lotus japonicus Gifu genome v1.2.
GTGGAAGCTAGAGAGAATAACTAATACATCTAATATAATCAATTCAATTTGTTTGTTGGGTTTTCTCTCTCTCCCTCAAT CTCTTAGTAGATTGTGCTCTCATGATTTTCATCAATAATATTCATTTTGTTGTACTAAAAAAAAGATTTTACAACTAAAT TTCATAATATCACCTCATCATGAGAAATAAGTTTTTGTGAATAGCTATGAGACTCTAATAAGAGAAACTGGTCCAAAATA GCAGTAGACTTTCTTTCTCATTTTTTCCTTAGATTTTACGCATTTATATTCACAGTTGAAGACATGGGTAAAAGTAAAAC ATTAAAAAAATACAAGAGAAAAGTGTAGTTAGGTGGTTAAATACTTAAATTTGATAAAAATAATTGTCACTGACATTATA ATTGTTAGGAAGTCTGCTTTACTCTCCGCAATTTTCTTCCTTTCACTTTATCCTTGTCTCCTCTTCAATCTTCATTGTCC TGTTCTTTCCCCACTTGTGACAAAACAAGACTCATAGAAACAGAACAAGAATAGATCATAGACTGCTTGCTACTTGGTAA GGTAAGAACAAGATAAGAAAAAATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGG TTGATAAGTTGACTGCGGATAACCGAGTGTTCCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGGTC TCTCTCTCTCTCTCAATTGTTGCTTTATAGTATATGTATGGAAATTCTTCTATAATTGATTATAAAGTCTGAATTAACTC TGTGAAAAATCTTCCGACACTAGCTTGTGTCAGAATTGATTAAAAACATGCTAATATAGTCTAGTATAGGCTTCTAGCTT TGGATCTGGTGTCTGCAATTGGTTATGAGTTCAAAGAATGTAACTTTGCTGCAATCAGAATAATGGGTAGCATCAAGTTT AGCATTTCCTATACTATTCAGAGCTTTTTTTTTGTAGTTAAGCATTTTTATCTCAAGAATATTGATTATTTGTTTCTGAT CATTTCTAGTTTCTTTGCAGTCCTGAGTTTTGTTCCCAAAGATTTAATGTTAAATAGTATAGGAACTGATTAACTTCAGG TGTATTAAGCGTGTGACTACATTGTAATTTTCATAGAACAAGTTTGCTGACAGATTAATCAATGTATCTGCAGCTCAGCA ACTACAACTCTTTTGAGGGAGTTCTTTATTGCAGGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGCCTTGACAAA AGCTTTGAAGGTAAGAAAGGATCTTGAATCCAATTATTTAATGCCTTACTATACTTTTCTTGTTATTATGTCTCAACATC ACATCCTTTTGCCTAACTAGGGACACCAAAAGTTGCCAAACCGGAAAGAAATATTGATAATGAGGTAATGAATCCTAAAC TTTGGTGCTGCTTGCAAATGTGACAAATTTGGAATTCCTGCAATCAGGAAAATCTTAAATTCACGGTTTGAAGAAATATG AGTCGTTCGATTAAGGTCAGACTACTCATGTTTTCAACTTATCTAAACCGTCCGATCTTAATTGATCCGCTCATATTACT TGATTGTGTGAATTTAGATTGCCTCAATTGTTGGGGAACCCTAAACCTTGCAATGCACAATAGAACAATCAGCTTTCCAG CATTCATCTGATTTTTTTATCTGTGTTGATTAGAAACCTGCAGCAGCCAAAGTCTCAAGCATGTTTGGTGGAACCAGGGA TAAATGTGCAGGTTGTCAGAAAACGGTGTATCCTACTGAGAAGGTAATAAATAATACAACCATAATTCTATAGCATTTTG GATCAATTTCTCTTTTCTCATAATCAATTATGACACTCAAAAGCTACTCATATCACCATAATTGATTTTGCCTTTAGAAT CAATTATCGAAGATTTGCAAACATGCAGTCCACTAACACACGTAAATGCCTCCAAAACATAGATCCATTGGCACACAATT AATCATCCTACTCTTCATCTAAACCTTGATGCTGAGTACAAAACTTTTGATTTTTTTCATATGGGATCAACATTTTTGAT ATAATGTAGGTTACTGTGAATGGAACTCCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGTTGTGTTATCAGTCC TTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCACCACATCCAACTGATTAAGGAGAAGGGAAATTTAA GCCAGCTGGAGGGTGACCATGAGAAGAATGTAGTGCAAGGGGAAATTAATGGTGACAAAGTTGCGGCTTAAACATGATAA GAGAGTCTTGAGTCTCAGAATTCTCAATTCTCAAGTTATGCACCATATGTTTCTATCATCTCTTACCATTACATGTAGTC CGGGAAGCTCCTTACCCGTGACAAATATCGCATTCAACATTTGTTAGTTGAAGTGTGTGGTTTTCATCATTTGTTTTTGG TTGTTGTGAGTGTTTGATTCAGAATTTGTGATTCAGAAGTACTTGCTACAGCACTTGTTAAGACTCTCAATGACTTCATA TTGATATCCTACACGGACGTCACAAAATCCAACTCTTATGGCACCGAGAAATTACTCACATAAATTATTTTTTTAGAATT GATTTTGACTTTAGAATCAATTTTAGATGAATTTCCAAACATGTACGGAACTTGAGTGAAGAGAGTTTTATTCAGTCTAG TTAGAGCAAAAGGCCACCTTCTTTCAAGATAACTAAAACTATAAAACTAGACGATAAACAAATGCAT
CDS sequence (LotjaGi5g1v0033800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACTGCGGATAA CCGAGTGTTCCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTCAGCAACTACAACTCTTTTGAGG GAGTTCTTTATTGCAGGCCACACTTCGATCAACTGTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTTGAAGGGACACCA AAAGTTGCCAAACCGGAAAGAAATATTGATAATGAGAAACCTGCAGCAGCCAAAGTCTCAAGCATGTTTGGTGGAACCAG GGATAAATGTGCAGGTTGTCAGAAAACGGTGTATCCTACTGAGAAGGTTACTGTGAATGGAACTCCTTACCACAAGAGTT GTTTCAAATGCTGCCATGGAGGTTGTGTTATCAGTCCTTCCAATTACATAGCACACGAGGGAAAACTCTACTGCAAACAC CACCACATCCAACTGATTAAGGAGAAGGGAAATTTAAGCCAGCTGGAGGGTGACCATGAGAAGAATGTAGTGCAAGGGGA AATTAATGGTGACAAAGTTGCGGCTTAA
Protein sequence (LotjaGi5g1v0033800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTP KVAKPERNIDNEKPAAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKH HHIQLIKEKGNLSQLEGDHEKNVVQGEINGDKVAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 188 | 188 | 4.1E-121 | – | |
| PANTHER | 1 | 188 | 188 | 4.1E-121 | – | |
| SUPERFAMILY | 3 | 35 | 33 | 2.28E-9 | – | |
| Gene3D | 4 | 74 | 71 | 8.6E-19 | – | |
| CDD | 6 | 68 | 63 | 2.41534E-40 | – | |
| ProSiteProfiles | 8 | 68 | 61 | 13.088 | ||
| SMART | 9 | 61 | 53 | 8.1E-11 | ||
| Pfam | 10 | 64 | 55 | 4.1E-10 | ||
| ProSitePatterns | 10 | 44 | 35 | - | ||
| SUPERFAMILY | 36 | 76 | 41 | 7.48E-15 | – | |
| SUPERFAMILY | 102 | 135 | 34 | 3.01E-9 | – | |
| Gene3D | 105 | 174 | 70 | 1.2E-18 | – | |
| ProSiteProfiles | 108 | 168 | 61 | 12.504 | ||
| SMART | 109 | 161 | 53 | 7.4E-15 | ||
| CDD | 110 | 170 | 61 | 2.60881E-38 | – | |
| Pfam | 110 | 164 | 55 | 1.4E-12 | ||
| SUPERFAMILY | 136 | 175 | 40 | 1.12E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0033800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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