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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0033900 |
Transcript ID | LotjaGi5g1v0033900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein; TAIR: AT3G12350.1 F-box family protein; Swiss-Prot: sp|Q84WW1|FB140_ARATH F-box protein At3g12350; TrEMBL-Plants: tr|G7IBC4|G7IBC4_MEDTR F-box protein; Found in the gene: LotjaGi5g1v0033900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5510317..5512915) extracted from Lotus japonicus Gifu genome v1.2.
GCCTCCTAAGACCAAACAACAAATGGATATTTGGGAATTGATACTTTGATACCATACGAGAGACCATGGGCTTCGTTTAC TCGAATCCATCACGAAACGCAACAACATCCCTCAATACGTCACGCGTTTTACAACATCCTTTGCGTTTCCTTCCCAACCA TGGTTTGGTTCCTCTCTTTCCTTCTCTCACAACACAACACTGAATCAACCATACTGTAGAGGAATGATTCCATAGCCTCC AAGAATCTTCCAAGCACAAACACACATAAATCTCCATCGTTCTACTTCTTCTCATCACTCAATCATTCTTTGTAGCAGAA AAGCATCACAGAAATGGCTACCAATCTGAACGACCCAAATTCTTCTTCTTCTTCTGTAGTTTCTTTCAGTGATTTCCCAG AAGATGTTCAGCTCTGCATCCTCTCATTTCTGGGTCCCTCTGAGATCGCCACCTTCGCCTGCACCTCCAAGCGTTTCCTC TCGCTCTGCACCAACGACGCCAAGCTCTGGTTCACCCTCTGTCACCGAAGATGGGGCTCCGAAACCCAAATCACCAAATG GGGTCAAGGAAAAATCGCCTTCAAGCTTCTCTACAATACCCTCCATGAATGGGACAACCTCATCGGCTTCTGGCGCCGCT GCGGCTCCGGCACCGGGACGCCATCGTTGCTGTTCTTCGAGTGGGGCCCGTCGTTCCTCTCGGGTTCCCGGGTCTCCGCT TTACAACCCGGATCCTACGAGGTTGCAAAGGTGCCGTTTATACGGATGAGTCTATCGGAGGAAGGGCAGGAAGTGAATCT GTTGGACCCTGATGGGCAAGCTGATTTTGATTCTGAGAATGAGTTGATTCCTGTGAATTTGAGCTTCATGGGGAAGACGC ATTTCGTTGTGGAGGAGAATCAGTTCAGGAGGAGCTCCAGCTATGCGAATCTCAGTGGTGGTGGTGGTGATGATTGTGGC GGGGCTGGAGAGGATTTGATTGGTTCTTCGCCGCCAGGGAGCTTGCCGGATCGGTTGGTGACGGAGATTTACCAGCGGTT CGCGAACAGGACTAGTCCAGGCAGTGAGAGGTCGAGGAGGCAGAGGAGGAAGGAGAAGGAGAGATTGGCTAGGATGAGGA AATGGGAGCCTGAGCATTTTGTCAAGATTGTGAATTGCTCGCCCTCGCCGTCACGGCCTTTGCAAGGCCTTTGGAAGGTG TTTCTAAACTGTTCCTTGTTGTTTTCCTCAATTATGTTTGCTTTCGAATCTGTTGTCATTTAATGATTGATGTGGAACAA CTAGTTGAGCAGTTACTAGTACCGTATTGGCATATTTGGTTGTTTGAGTCATAGTAATCAAACTTCAAAATGTTTGTAAA AGAAGATGATATGAGCAAAAGAATCCTGATCATTGGTAATTGGTAGTTGGGAACTAGGTAGTGTCTTTGGATATAATGTG ATGTGAACGGATTTCCATCCCAATCCATAGAAGAGTTTCCTTCATTTTTTGTTATCTCGAAATGAGTTTTAGTATCCATT TGCACTGGGAATATCAAAACTTGCCGTAGCTGGAAAATTTCCATCTTTGTGGTCTTTTAGTTAGACAGTTTAGATGGTCT TGTAGAGATTCACACTTTTTATTGGAATCACTCCCTGCTCCCTAGTGGATCATTGGGTATATATTGCAAAAGTTTTCATT TTCTTTGTAAATTTATAATGATTTTGAAGATGAGTGATGGTGGAGACCTTCATGTTGTGGTATGCTGGCTCATTGAAACT ATCATTGCTGCAGGGTATTTGTGATGATATGAGTTTAGCCTTTTACCTTGTGGCATATGATGACATTGGGGGCATTGCCT GTCGCCGCCTCGGGGACCCTCCAGAACGTTTCTCCACTTACGCCCCGGTTTTCTGGACGTCTAACGCTGCATTTCTAGAA TCCCCTTTTCCTCTTGAGGAAGAATCTTTGTATGACAGTCGCATTCATCTTCAACCACACAATGATACTCACGAGCAGTT TGATTTCTCTTCCGATGAAGGGGTAAATCAAGTTCAACATTTCCAGTTGCCAGACATTGAAGTGGTGAATGGAATTCTTC ACATCAGCTCAAGTTATGATTTAGTTATTGCAGACCTTGCTGGAACAATAAATTCAAGAAGTGCAGAGGGAAGGATTTGG CTGTACCATGACGGTACTTTCGGTTTCGGATTCCTTCGGGACAATTTTGTCATAGACATGAAACATATTGTCCATGATGG TTGTATTGTGAATGCAGTAAATCCTTCTGCTGATTAATTTTATTCTTTCTGCACTTCATATTCATAGATAAATTGGTTAG CCGGATGTCACCAATAAATTGTGGCATATTGTATTTTTAGCTGTGAAAAATAATAATTTCCTTAGATAGTATTCTGTTTT GCTTGCTCTCCAATAAGAGCTTGTTCTTGTGGATGTTTAATGGCTTGTTTTCTCCTTTTAACTGTGTTTTAGGCAGGAAT AAGTTTCTAGGTGATCTCTATTACACTGCAAGAACATGCACATTATTGCCTTACCTGTGACTTCCTTTGGTTTGGACTAT GGGGTTAGGGCAAGACATTGAATATACAGCTGAAATTAG
CDS sequence (LotjaGi5g1v0033900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCAATCTGAACGACCCAAATTCTTCTTCTTCTTCTGTAGTTTCTTTCAGTGATTTCCCAGAAGATGTTCAGCT CTGCATCCTCTCATTTCTGGGTCCCTCTGAGATCGCCACCTTCGCCTGCACCTCCAAGCGTTTCCTCTCGCTCTGCACCA ACGACGCCAAGCTCTGGTTCACCCTCTGTCACCGAAGATGGGGCTCCGAAACCCAAATCACCAAATGGGGTCAAGGAAAA ATCGCCTTCAAGCTTCTCTACAATACCCTCCATGAATGGGACAACCTCATCGGCTTCTGGCGCCGCTGCGGCTCCGGCAC CGGGACGCCATCGTTGCTGTTCTTCGAGTGGGGCCCGTCGTTCCTCTCGGGTTCCCGGGTCTCCGCTTTACAACCCGGAT CCTACGAGGTTGCAAAGGTGCCGTTTATACGGATGAGTCTATCGGAGGAAGGGCAGGAAGTGAATCTGTTGGACCCTGAT GGGCAAGCTGATTTTGATTCTGAGAATGAGTTGATTCCTGTGAATTTGAGCTTCATGGGGAAGACGCATTTCGTTGTGGA GGAGAATCAGTTCAGGAGGAGCTCCAGCTATGCGAATCTCAGTGGTGGTGGTGGTGATGATTGTGGCGGGGCTGGAGAGG ATTTGATTGGTTCTTCGCCGCCAGGGAGCTTGCCGGATCGGTTGGTGACGGAGATTTACCAGCGGTTCGCGAACAGGACT AGTCCAGGCAGTGAGAGGTCGAGGAGGCAGAGGAGGAAGGAGAAGGAGAGATTGGCTAGGATGAGGAAATGGGAGCCTGA GCATTTTGTCAAGATTGTGAATTGCTCGCCCTCGCCGTCACGGCCTTTGCAAGGCCTTTGGAAGGGTATTTGTGATGATA TGAGTTTAGCCTTTTACCTTGTGGCATATGATGACATTGGGGGCATTGCCTGTCGCCGCCTCGGGGACCCTCCAGAACGT TTCTCCACTTACGCCCCGGTTTTCTGGACGTCTAACGCTGCATTTCTAGAATCCCCTTTTCCTCTTGAGGAAGAATCTTT GTATGACAGTCGCATTCATCTTCAACCACACAATGATACTCACGAGCAGTTTGATTTCTCTTCCGATGAAGGGGTAAATC AAGTTCAACATTTCCAGTTGCCAGACATTGAAGTGGTGAATGGAATTCTTCACATCAGCTCAAGTTATGATTTAGTTATT GCAGACCTTGCTGGAACAATAAATTCAAGAAGTGCAGAGGGAAGGATTTGGCTGTACCATGACGGTACTTTCGGTTTCGG ATTCCTTCGGGACAATTTTGTCATAGACATGAAACATATTGTCCATGATGGTTGTATTGTGAATGCAGTAAATCCTTCTG CTGATTAA
Protein sequence (LotjaGi5g1v0033900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNLNDPNSSSSSVVSFSDFPEDVQLCILSFLGPSEIATFACTSKRFLSLCTNDAKLWFTLCHRRWGSETQITKWGQGK IAFKLLYNTLHEWDNLIGFWRRCGSGTGTPSLLFFEWGPSFLSGSRVSALQPGSYEVAKVPFIRMSLSEEGQEVNLLDPD GQADFDSENELIPVNLSFMGKTHFVVEENQFRRSSSYANLSGGGGDDCGGAGEDLIGSSPPGSLPDRLVTEIYQRFANRT SPGSERSRRQRRKEKERLARMRKWEPEHFVKIVNCSPSPSRPLQGLWKGICDDMSLAFYLVAYDDIGGIACRRLGDPPER FSTYAPVFWTSNAAFLESPFPLEEESLYDSRIHLQPHNDTHEQFDFSSDEGVNQVQHFQLPDIEVVNGILHISSSYDLVI ADLAGTINSRSAEGRIWLYHDGTFGFGFLRDNFVIDMKHIVHDGCIVNAVNPSAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 3 | 101 | 99 | 9.7E-10 | – | |
SUPERFAMILY | 7 | 87 | 81 | 1.7E-15 | ||
ProSiteProfiles | 15 | 62 | 48 | 9.55 | ||
Pfam | 17 | 55 | 39 | 1.3E-7 | ||
SMART | 21 | 62 | 42 | 8.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0033900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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