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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0036800 |
| Transcript ID | LotjaGi5g1v0036800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G10120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74; TrEMBL-Plants: tr|V7CU85|V7CU85_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0036800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6089930..6093899) extracted from Lotus japonicus Gifu genome v1.2.
CTAGCTTTGTAGCTCCTGGTGTTGTCTGTAATCTATAAAAGTTAGATTTTTATGCTACCTTTGGTGTTTATGCTCACTAC CCATTTCATGAAATTTGTTTTTGCTGTCAAATTTATTTACATCTAAGCAGCATTTGATGCTCTCTGGTGATATTGTCAGA ACACACCCCAACTAGAGGAACTGTGTTCAACTTCAACCTAAACCCTGTCCCTTTCAGTTTCCCTCAGTCATTGCAGGATT TGAGTAGAATTAGATGCTTTTGGTCTTTCCTTGTTCTTGGATTCCCATCCTTGAATTTAATAGCAAGAGTTTCAAAACAG CACTTCTTGTCTTGTCTTTTAAATCAAAATCTTAAAAAAGATATATACCAACTGTTTGTTCTATTGCCTCAAAGAGTTGC AATTGCAAGCAAGGCAATTCATGTAATGGAAGATTTGATGGAATGGAGATTTTAGTTGATGTTGTGTGGAGTTTGGACAA AGGAGAAAAGGGAATCTGCTTTACTTGCAGTTTGATGAGCTGTTAGCTAATCCCATTGTCCATGTCCTTCACCTTTATGC TCTCACAAGACTGAAAGGTTCACTTTCTTGTCTCAGAGGAAGCATTTTATATATATTTTTTGAAGCAGTGTAGACTTTGA TCCTAAGGTTCTTGAAGGAAGAGGTAATAACCTGGTGTCTGACGAGTAAGATTATATTCCAATTTACTTTTTCTATGTAA GCTACTACAATGAGGGTTTTCTTTTACTTTAACTTCCTCTCAGTCCTATAAAGCTGCCAAGCCCTTTGTTCCTTGTTTAG TCCTGCAAGATATCTCTCGAACCAGCTTAGTCAAAATTCACTTTCCCTTTAATCATTTGCAATTGTTTATTTCTCATGTT TCATCATATCTAGATGCAGCACTGGTGTGAATCAGACTGCAGAACTAGGATTGTGGTCACAGGTTGATATATATAGAGAG AGAGGGTAACTTTCTTGGTTGTGACTGTTTAGTTTAGACTTTAGAGTGTTAGAAACTATTGAATCCAAATGGGGGGTCAA GAAAATGCTATGAGGTTTCAACATGGAAAGGAGAGTATTATGAGTGCAAATGTTTCAGAAATGGCCATTAGTTCTGTGTC TTTGGCTAAACCTTCAGAGGCAGCTAATCCTTTTCTTGCTTCTCATGCTTGGGATCCCCTTGTTTCATTGAGTCAGGCTC AAACTTTTGGAGGGTCTTCAATGGTTTCTCATGGTGAGTATGCCAATGCAAATGCTTCTTACCCTCTTGTTATGGAGAAT CAGGGAATGGGAAGCACCTCTCACCTTGTTCAATACATGTCTGACTCAAATCTTAGGGGCATGGTACCCAAGATTCCCTC CTATGGAAGTGGTAGTTTCTCAGAAATGGTTGGCTCCTTTGGCCAACATGGGTCTGGTGATATAACCAACACAGGGTATC CACAACACTATAATGCTGGCATTGAAAGGGTTCCAATTAATTGTGAGCACTCACAGGTTGAGGACTCAACCACTGAAGAG GGAGCCCCAGGATCTGCACCTAGTGGAAATAGAAGAAAGCGTGGGCTTGATCAAAATTCTACCTTCAATCCAAACAAGGT TTGTACTTTGTTGACTGTAATACATCAATGAATCTCATTTAGGACTTGGAATGTTAGTTTCATTGTCTTGTTTATGTGGT TTTGTGAGCTAATAATGAATGAAATCCTATATGAACTCCAATTAGAATGCTGAGGGTGATGAACTGAAAGATTCTCCTGG GAAGATCTCTGATGGTTCAAAAGAACATGAAAAGAAACCAAAACTTGAGCGGAATGCTAGTGCAGATTTGAGAGGCAAGC AATCGGTGAAGCAAGCTAAAGACAACTCAGAAAGTGGAGAAGGTTCCAAAGATAATTTCATTCATGTTAGAGCTCGTAGA GGTCAAGCCACAAACAGTCACAGCCTTGCAGAAAGGGTACCACCACCATCTTTCTAATATGTTTGTTATGAGAAATCCCT TTGTTCTATTGTATACATATAAATGTTTGGAAATCATTTTAGAATTGATTTTACAGCCTAAATCAATTTTAAAGAAGTTG ATTCTGAGTGCCAGAATTGATTGTGAGAGAAAATAAGCTGATCCAAACTTAGTCCTAATAGTTGTAAACCTTTTTGCTTG CAGGTAAGAAGAGAAAAGATTAGTGAAAGAATGAGGTTGCTTCAAGAGCTTGTTCCAGGATGCAACAAGGTGATTTGATT GAGAAGATTAGTTAAATGATTTTCCATGTGTGTTGATTTTTCTGCATACTATGTTCTCTTTGTTTAACTATGACAATAAT GATGTCTTTGGTTTTCTATCAGATAACTGGCAAAGCAGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAGC AACAGGTTGAGGTATGAAAGTACTGCAGTGCCATATTTAATGTATCAATTTAATATTCAAACTTGATCTGTTTTGTACTG TGCACATGCTTCCCTCCCGGGGAAAAAACTTAAAAAAATGCATAATAATATAATGGAATTGATTATTTAACTGAATAGTA AATGTTAAGAGATATATTATAAGTCAATCACACAATTCCATAGAGTCAATTCCATCATTATGGTTCTGGGAGTATTCATC TAATTAAGGTTTATTTTGCAGTTTTTGTCCATGAAACTTGCTACTGTGAACCCAGAGATGAATTTTGATTTAGAGCGGAT CCTATCTAAAGATGTAAGTGAAAGTCTTATAGCATGTTTGAATCAGCTTATTTTTTCTCATAATCAATTCTGACAGTTAG AAGCTACTAACAGAAGCTTCTCCTCAGAATTGATTTTAACTTTAGAATCAATTGTACAAAAAATTCCAATCCTGCTATCA GTGTGTTTCGTGTAGAATCAATTTATTCTCCTATTCTTTGAGAGAAATAGATTTCCATTAGAAGTGCTTGTTACCATTGT TAACGGAAATCCAAACATAGGACATGGATGTGAGTACACAAAATTATTATGACTTCATTTCCCTTTTGTTTAGATTCTCC AATCTCGCATAGGACATGGAATTGGTGGTTATGGTGCTGCTGGTGGTATCAGCTCCTCTCACCCATTCCCGAATACAAGT TTCCAGGGAAATCTAGCTGGCATGCCTGGTTCATCAACACAATACCCTCCTTTGCCACAGGTAAAAAAAGGGTAAAATTT CTTTTGATACAGTACTCTTTGTAAAATTTCTGCTGATATATATCCCTTTGCAGAATGTTTTGGACCATGAGTTCCAAAGC TTCTATGGAATGGGATATGATTCCAATACAGTACTTGACAATTCGGGACCTAATGGTAATAGACATTATCTTTTTAATTT TGATTATTTGTATAATCAATAGTGTGTGCTTTATTCTAATTTGTTGTCATGTTAAACAGGGCGGTTGAAAACAGAGTTAT AGTATCTACAATATATAGCCTTGTTTCTACAACAAAGACTTCAGAATTTTCCTGTTGACCGCACAATTTAACTGAAGTTG AAGAAAGGAAAATAAAGGTTTTAGTTGTATAGGAAGGATCTTTCTTAATACCTAACTCTTGGCTCTTCGATTTTTTAGCA GAAGATGACTTCGTTAGATTTATCATTGGAAAAATTACACATGTTATGTAAATGTGTGTAAAATCTAGATCATTAAGAAC ATCCTGCGGTGGTGGTCTTAATATAGTGACATGGAGGAGCAGTATTTGAGGAGCATGCAAGGGTATGCAACCATAATTAC TTTTTGTGAAATTATTATGTATAGAGTTGCTGGGCTTGGAATCTTGAAGCTCATTGCTTTCAACATTGTTGCAGATAAGA TCATGTGTGCACTTTTGTAAGGATCTCTGGTTGTTTTTATATTGTTCTTTTGAAAAGAAAATTTACTGAGTGAAGAGCTT CTTAGTGCATGAAGGGGTGAAAATGCTGCCACTTGTATGAGTGTGTGCTA
CDS sequence (LotjaGi5g1v0036800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGTCAAGAAAATGCTATGAGGTTTCAACATGGAAAGGAGAGTATTATGAGTGCAAATGTTTCAGAAATGGCCAT TAGTTCTGTGTCTTTGGCTAAACCTTCAGAGGCAGCTAATCCTTTTCTTGCTTCTCATGCTTGGGATCCCCTTGTTTCAT TGAGTCAGGCTCAAACTTTTGGAGGGTCTTCAATGGTTTCTCATGGTGAGTATGCCAATGCAAATGCTTCTTACCCTCTT GTTATGGAGAATCAGGGAATGGGAAGCACCTCTCACCTTGTTCAATACATGTCTGACTCAAATCTTAGGGGCATGGTACC CAAGATTCCCTCCTATGGAAGTGGTAGTTTCTCAGAAATGGTTGGCTCCTTTGGCCAACATGGGTCTGGTGATATAACCA ACACAGGGTATCCACAACACTATAATGCTGGCATTGAAAGGGTTCCAATTAATTGTGAGCACTCACAGGTTGAGGACTCA ACCACTGAAGAGGGAGCCCCAGGATCTGCACCTAGTGGAAATAGAAGAAAGCGTGGGCTTGATCAAAATTCTACCTTCAA TCCAAACAAGAATGCTGAGGGTGATGAACTGAAAGATTCTCCTGGGAAGATCTCTGATGGTTCAAAAGAACATGAAAAGA AACCAAAACTTGAGCGGAATGCTAGTGCAGATTTGAGAGGCAAGCAATCGGTGAAGCAAGCTAAAGACAACTCAGAAAGT GGAGAAGGTTCCAAAGATAATTTCATTCATGTTAGAGCTCGTAGAGGTCAAGCCACAAACAGTCACAGCCTTGCAGAAAG GGTAAGAAGAGAAAAGATTAGTGAAAGAATGAGGTTGCTTCAAGAGCTTGTTCCAGGATGCAACAAGATAACTGGCAAAG CAGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCTACT GTGAACCCAGAGATGAATTTTGATTTAGAGCGGATCCTATCTAAAGATATTCTCCAATCTCGCATAGGACATGGAATTGG TGGTTATGGTGCTGCTGGTGGTATCAGCTCCTCTCACCCATTCCCGAATACAAGTTTCCAGGGAAATCTAGCTGGCATGC CTGGTTCATCAACACAATACCCTCCTTTGCCACAGGTAAAAAAAGGGTAA
Protein sequence (LotjaGi5g1v0036800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGQENAMRFQHGKESIMSANVSEMAISSVSLAKPSEAANPFLASHAWDPLVSLSQAQTFGGSSMVSHGEYANANASYPL VMENQGMGSTSHLVQYMSDSNLRGMVPKIPSYGSGSFSEMVGSFGQHGSGDITNTGYPQHYNAGIERVPINCEHSQVEDS TTEEGAPGSAPSGNRRKRGLDQNSTFNPNKNAEGDELKDSPGKISDGSKEHEKKPKLERNASADLRGKQSVKQAKDNSES GEGSKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT VNPEMNFDLERILSKDILQSRIGHGIGGYGAAGGISSSHPFPNTSFQGNLAGMPGSSTQYPPLPQVKKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 385 | 382 | 1.0E-167 | – | |
| PANTHER | 4 | 385 | 382 | 1.0E-167 | ||
| MobiDBLite | 155 | 267 | 113 | - | – | |
| MobiDBLite | 176 | 191 | 16 | - | – | |
| MobiDBLite | 192 | 252 | 61 | - | – | |
| Gene3D | 254 | 327 | 74 | 9.9E-14 | ||
| CDD | 255 | 312 | 58 | 1.53916E-11 | ||
| SUPERFAMILY | 255 | 326 | 72 | 3.66E-17 | ||
| ProSiteProfiles | 257 | 307 | 51 | 15.485 | ||
| Pfam | 260 | 308 | 49 | 2.7E-6 | ||
| SMART | 263 | 313 | 51 | 4.6E-10 | ||
| MobiDBLite | 363 | 383 | 21 | - | – | |
| MobiDBLite | 363 | 389 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0036800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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