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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0037800 |
| Transcript ID | LotjaGi5g1v0037800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT5G65810.1 transmembrane protein; Swiss-Prot: sp|Q9M2Y6|Y3972_ARATH Uncharacterized protein At3g49720; TrEMBL-Plants: tr|I3STK9|I3STK9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0037800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6239386..6243025) extracted from Lotus japonicus Gifu genome v1.2.
TCTATACCAACCGACACTCAAGCAAGTTGCATTGCACCAAAGGTTCCAATTTTTCGTTGGCAGAGCATAACGACATACCA GGACTCTCTCTGTTTCCTTTATCCCTCTCTCTTCTTCTATTTCTGTCATCACGCGTGATTCAGATCCATTTCTCACAATG CAACTCCCATAACACTCTTCACTGGTAAATAATTCAGATCCATCTCTATCAATGCGTGATTTCGTTCTGGTTTTCATTTT CAATTTCATTTACGCATTCATTCGATTTCTCACGTTTTCAGATTACTTCGTCACTGTTTCTATTGCGCAACAACAACATC TGTGATGTCGAGGAGACCGGGGAATCCTTCTCGAAGGTTCGGGGACAGTTCCAAATCTAGGTCCTCGCCGATTTTGTCCG TTGGCCTCATAGTCTTGGTCAGTGTTCATTTCACAATTCATTCTATTCACACAGCAATTCATAGATTCAATTCAGATTTA CAAAATTACAATACATTGTTTCTGATTTCCTGTGCTTTTTTTTCTTTGGTTAATTTTATAGGGAAGTTTGTTTCTCATTG CGTATTTTTATAGGGGCTCAGGTTCGTCTTCTATGATTTTTTCTTGCTTCAATTTGGTTTAGTTATTATATGATGCGGCG CGATTGAGAATTTTTTTTCTTATTATAGGTGGATTGGGGAGCCATTTGGATTCTGTAAGCAGGGTTGAAGGTAGAATTCA ATTTTGTTTTTCGCGCTGAATTTTGATCTGTTTCGATTTATTAGGCCAGTTGAAGTGTTATGGTTGTGTTTGTTATGATG TGCAGTGCATTAATTATGCCATGTATTATTTTATTTTCCTTAATTGTTTGTAACCTATGTGGAAAACATCTAGTGTTATT TATTTTCCTAGTTAATTACCCTTTTGATGAATTTCAGTTCACTTGGATTGGATGTCTTAAACAACAATGCTAGGTTGTGT CTTGTGTGTGAAGTGTGAACATGTGGGAGGTTTGTCACCTATGAGCACTTTGTTCTTTGAGATCTGTGCTCTTGAAGGAT AGCTTGCTGTATTAAATGTGATTTCCTTTTTTATTTTCTGGTGTTGTTTTTCACTTTTTTAGCAGTCAAGACTTCACTTG AGCCATAGAATTTTTAAGATGTGAAGTCGGGAAAAAGCACAATGATGCCTTATCTCCTTTTGGGTCCATTATAGGCGTTC TGCTTCCTAGAGTCTACCGCATATAGAGAAGACGTACAGTCTGTTTTGATTCACGTTGGATACTCACCTCAATGGATGTC CGCGGTTTACCATTTAAAAAGATGAATGGAACTCTTTCCATGAATTGGGATGATTCATTTCATTTTTTTCTTAATTGATA ATGAAGTGATCATTAGTTCATTTCAAATTTTTAAGGCATTATTAATCTTAGGTAAGATTTTATCAGTTTTAGTAGCATTT ATCTATTATAGGTGGATGGATTGACATTTTGTCAATTTGTATGTACACCGACAGTCAGCTTTATCTTTCCATTTAATTGG CTTCCTGAAATGTTGTAATAATATCCATAACTTCCAAAAGCAGGTGATTATTTGTGCAGTGGAGAGGTCCAGCGAGCAAT TCCCATTTTACAGAAAGCATATGGAGATAGCATGCATAAAGTATTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTA AATTGCTAAAGGAGGACGAAACCGAAGCCTGGGGTATAGAACCATACGATATAGAGGATGCTGATAGTAATTGCAAATCA CTTATCCGTAGAGGCAGCGTGCGCGTGGCTGATATCAAGTTTCCTCTACCATATAGGCCAAAGTCTTTCTCTCTTGTAAT TGTTTCAGATACTCTGGATTACCTATCTCCCAGATACCTCAATAAAACTCTTCCAGATTTGGTGAGGGTATCAGCTGATG GTTTAGTGATATTTACTGGTAAGAGCATTTTACAGAAACTTGAAATTAGAGCAGATTCCTATCTATGAATAAAATTTATT TTTCCCTCCAAAGAGATTCCTTTTGATATAAAACTTGCATTAAATCAGTTAGGTTCGTTACAGTTACAACCCAAAATAGG GAAATAAAGGTAGGGCGTATTCACCGAGTTACTTTGATTCACTACTCATATGCTGAGTTCAGTTTTTGGTAGAGCTCAGC ATTGTTGATTGATTCATGTATTGAATCCCACCTAGCTGTTGTTTAATCCAAAGGCTTGGTTATTTTTTGTTGAATTGGAA TGTAGCAGTATTATGGTATTTGTTTTAAGAGTAGACTTGCTGTTTGAAGTTGTGTGCTAGTTTTAAATAAAACTACGCTA GAAAGATCTCTTATTTGACTTAGTAATTTTGATGTGTTACTAGTAACTTGAGCTTTGAATAACTCAAAAGACAATTTTAG CAGTCAATAATATTTTGGACCTGTCACTGACATGTGATATTGTCTAAACATGAAGGTTTTCCCACTAATCAAAAGGCCAA GGTAGCAGATGTTTCTAAATTTGGAAGAGCGGTGAGTGAATTTTACTTAGTAATAATATTTATCTATGTTTTTGTTGTTT TAATTCAATTACTGAGCTTGGATGAATAGAAGGTCCTTGATTCTAGACATTCAACCTTTTTGAAGCAGAGGGTATTATAT TATATTTTAATGTAAAATGTGGTGGAAAATAAATAACTGATTCCCGTTGCTTCAGGCCAAGATGAGGAGTTCATCCTGGT GGGTCAAGTATTTCCTTCAGACCAACTTGGAAGAAAATGAAGCTGCTTATAAGAAGTTTGAGCAAGCCTCAACAAAGAGT TCATATGTTCCCAAATGCCAGATATTCCACCTGAAGTCACTCCATTGACTTGTGAGATGATTAATTGCATGTTTGGATCA GCTCCTCTCACCATAGAATCAATTCTGAAAATCAAAGGCTACTTAAAGAAGCTTCTTCTCAGAATTGATTCTGACTTTAG AATCAATTGTAGAAGGATTTCCGAACATGCACTGAACATGTAGCATTGGAGTTCTCGTAGCTACTTCTCCATGTTCATCT AAAACATTTTTCTACTATAAGGGTAATTTAATTCTTTGAAATATACTCAGCCATAGATGGTGTATGACTTTTGTTGTTGC TTGAAATAGATATCTATTCTTTCAAATACCAGTCCTTGGCGGCAAGGGACAAATCCATTTGGTATTTAACTAAGTTATCA AGTTGCATTTAGCATTTAGGTGATCTATAAGAAAAGGGGCAGTGATTGTTGTACTAAAGTAATTCTCCTTTTTTGTTTTA TTTTTCTGATATAAATTAATTTCCCTGTATTGGTACACCACATTGTATCTTCTTTAGTTCGCTTCTATCACTACTTTGTT ACTGTTATAAAGAGGAATAAGTAGATCTATATATAACATAAGAAAATTTTGACATGAGAAGATCCATTCCCATAGATTTT TCATAGATTGACCAAAAAATAATGATTTTACATAGGAAACTGCAAAAGATGGTGTAATGTATGATTAAGCTGTTTTAATT TTATATTTTGAACTTTGAAGGTTAACTTTTTTTTTTTTTTGTCAAATGAAGGTTAACTTTGAGTGGACTCAGGTTCATAA TGAAGGAAAAGTTTATTATGCACAAGGAAATGCTTGTGCA
CDS sequence (LotjaGi5g1v0037800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAGGAGACCGGGGAATCCTTCTCGAAGGTTCGGGGACAGTTCCAAATCTAGGTCCTCGCCGATTTTGTCCGTTGG CCTCATAGTCTTGGGAAGTTTGTTTCTCATTGCGTATTTTTATAGGGGCTCAGGTGGATTGGGGAGCCATTTGGATTCTG TAAGCAGGGTTGAAGGTGATTATTTGTGCAGTGGAGAGGTCCAGCGAGCAATTCCCATTTTACAGAAAGCATATGGAGAT AGCATGCATAAAGTATTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTGCTAAAGGAGGACGAAACCGAAGC CTGGGGTATAGAACCATACGATATAGAGGATGCTGATAGTAATTGCAAATCACTTATCCGTAGAGGCAGCGTGCGCGTGG CTGATATCAAGTTTCCTCTACCATATAGGCCAAAGTCTTTCTCTCTTGTAATTGTTTCAGATACTCTGGATTACCTATCT CCCAGATACCTCAATAAAACTCTTCCAGATTTGGTGAGGGTATCAGCTGATGGTTTAGTGATATTTACTGGTTTTCCCAC TAATCAAAAGGCCAAGGTAGCAGATGTTTCTAAATTTGGAAGAGCGGCCAAGATGAGGAGTTCATCCTGGTGGGTCAAGT ATTTCCTTCAGACCAACTTGGAAGAAAATGAAGCTGCTTATAAGAAGTTTGAGCAAGCCTCAACAAAGAGTTCATATGTT CCCAAATGCCAGATATTCCACCTGAAGTCACTCCATTGA
Protein sequence (LotjaGi5g1v0037800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRPGNPSRRFGDSSKSRSSPILSVGLIVLGSLFLIAYFYRGSGGLGSHLDSVSRVEGDYLCSGEVQRAIPILQKAYGD SMHKVLHVGPDTCYVVSKLLKEDETEAWGIEPYDIEDADSNCKSLIRRGSVRVADIKFPLPYRPKSFSLVIVSDTLDYLS PRYLNKTLPDLVRVSADGLVIFTGFPTNQKAKVADVSKFGRAAKMRSSSWWVKYFLQTNLEENEAAYKKFEQASTKSSYV PKCQIFHLKSLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 251 | 251 | 1.7E-131 | – | |
| PANTHER | 1 | 251 | 251 | 1.7E-131 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 42 | 252 | 211 | - | – | |
| Gene3D | 66 | 245 | 180 | 3.0E-8 | – | |
| SUPERFAMILY | 71 | 188 | 118 | 3.57E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0037800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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