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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039800 |
| Transcript ID | LotjaGi5g1v0039800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT5G25950.1 AslB, putative (DUF239); Swiss-Prot: sp|C5CG17|SURE_KOSOT 5'-nucleotidase SurE; TrEMBL-Plants: tr|I3SAS8|I3SAS8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0039800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6705954..6707765) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGTGGAACACCAATTTCTTTCTTTCTGCAGGCTGATGGTTCAAGGAAAACAGGTTGCTTTGATCTGACTTGTCCTG GGTTTATTCAGACTAGTAATGAAATTGCCTTGGGGGCAGCAATTTCTCCAATATCATTGCCGGGTGATCTTGGATACACA ATAACTATTTCTATCTATAAGGTGAGATATTTATATTGAACTGGCTTACCCCATTGAGGCTATATTTAGTCTCATACTCC CATGCTAGGTGGATTGATAGTATTATTATAAAAATTCAAATAAAGAATGTGTTTAATATCAATAAGTGTCAGTCTATAGT GGTTGGCAAGTTAGATGTGAGGGATCATCTGTTGAAAGAGACGATCATGTTTTCTCAAACGAGTTTACATTTGTTAAAGA AAAAAATTGAAATTCTCAACCCATTTTTGTAAAGACTATTGGTACATTTAAAACGCTGTTATAAGTTAGACAATATAGCA CCAACAAAGTATTGGTATAGTGATAGGTCCCAGCTAAATCCCCATAAGGATGAAGTCACAAGATTGAACTCTGCAAAAGT CATTTGTTGAGAGAGACATTTGTCAAATAACAAAAAAGGTTTGATAATACATAAATGTAATCATTATCGATTTTTCTTCT TTAATTTTTTCGTAGCTTGTAATTCCATTATACAGTGTATGCTTGAAAATTATTCTACAATTGATTCTCTTCTTTTATTT TTTCCCTAGCTTGAAATCCCTTTATTTAGTGTATGTTTGTTATTCTACGATTGATTCTAAAGCTATAATTTGAGGAGAAA CTTATGTAAATAGTTTTTAGACTTTTTCTACCACAAACCAACAGAAACATAGTTTATAAGTCAAAAAAATGTTTGTCTGC AAACTAGTTTTAGCACTTAAAAAGAATATTGTATTTATAAAAACATGGTTACTTGTTGCTTCCAAGACTTCTGTGGACTT GATCTTTCTAGGTGGTGGCCTCGTGGATTTGGGTCTATACAAAGGGGTGTGCAGTGATTTTTCCTCTTGGGGCTTGTGAC TTTTTTCTATGTTTGCTCTCTGTCTTTGTTTTATTTCAGTATGTCTCCCGAATTATGTTTTTGATCACACAGCTTCTCCA CCTTATATTTCTTTTTCTCTTATTTTTTTTGTATGAATGGTTGAAACAACCATTGTGCTTCATTTTAATACAATTCTTTG GTTTATAAAAAAAAATGAATGACTAATTTTTAACATAACCTACTGCAAAACTTCCCTAGTTTCCAAGATTTAAATTTGAT TATGAAAATAGATCAAACATCCAATTAATAGTTATTTTCATATGCTTTGTACACAGGACCCAGATACTAATAATTGGTGG ATGCAATTTGGTGAGAAGAACATTGGTTATTGGCCAGCAGAGCTATTTGAATCAATACGTTACAATGCAGCATCAGTGGA GTGGGGTGGTGAAGTTTACAGCACAAGCATTGGGAAAACTCCTCACACTGGAACAGACATGGGTTGTGGAAGATTTGCTA CTGATAAGTTAGAAGCGGCTTCAGTGACGAGGATTAGAATTCATGACAATTCTGCCATGTGGAAGTTCCCTGAATGGGTT TATGAATACTCAGATGAATATCGTTGTTATGATGTTTGGTACGTTGGAGATTACGTTGAAGATCCTCTGTTATATTTTGG AGGGCCTGGTAGAAACCCAATGTGCCCATAGAAGAGGGTTTTCTTGAATGATGATACCATTTCTTGGCTGTTTTATTTGA GAAATTTTGTGGGTTTTTGTTTAATTTCCAAAGTTATTTAGATGAAAATTTG
CDS sequence (LotjaGi5g1v0039800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTTGGTGAGAAGAACATTGGTTATTGGCCAGCAGAGCTATTTGAATCAATACGTTACAATGCAGCATCAGTGGA GTGGGGTGGTGAAGTTTACAGCACAAGCATTGGGAAAACTCCTCACACTGGAACAGACATGGGTTGTGGAAGATTTGCTA CTGATAAGTTAGAAGCGGCTTCAGTGACGAGGATTAGAATTCATGACAATTCTGCCATGTGGAAGTTCCCTGAATGGGTT TATGAATACTCAGATGAATATCGTTGTTATGATGTTTGGTACGTTGGAGATTACGTTGAAGATCCTCTGTTATATTTTGG AGGGCCTGGTAGAAACCCAATGTGCCCATAG
Protein sequence (LotjaGi5g1v0039800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQFGEKNIGYWPAELFESIRYNAASVEWGGEVYSTSIGKTPHTGTDMGCGRFATDKLEAASVTRIRIHDNSAMWKFPEWV YEYSDEYRCYDVWYVGDYVEDPLLYFGGPGRNPMCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 116 | 115 | 2.8E-46 | – | |
| PANTHER | 2 | 116 | 115 | 2.8E-46 | – | |
| Pfam | 2 | 109 | 108 | 1.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0039800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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